ID FJ623474; SV 1; linear; genomic RNA; STD; VRL; 8880 BP. XX AC FJ623474; XX DT 17-FEB-2009 (Rel. 99, Created) DT 05-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Iris yellow spot virus segment L, complete sequence. XX KW . XX OS Iris yellow spot virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-8880 RX DOI; 10.1007/s00705-009-0568-5. RX PUBMED; 20016920. RA Bag S., Druffel K.L., Pappu H.R.; RT "Structure and genome organization of the large RNA of iris yellow spot RT virus (genus Tospovirus, family Bunyaviridae)"; RL Arch. Virol. 155(2):275-279(2010). XX RN [2] RP 1-8880 RA Druffel K., Bag S., Pappu H.R.; RT ; RL Submitted (13-JAN-2009) to the INSDC. RL Plant Pathology, Washington State University, Pullman, WA 99163, USA XX DR MD5; b03f3a84f0466fabd3ca96436e15b611. DR EuropePMC; PMC4818514; 27038777. XX FH Key Location/Qualifiers FH FT source 1..8880 FT /organism="Iris yellow spot virus" FT /segment="L" FT /host="Allium cepa (onion)" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="plant tissue" FT /collection_date="Jan-2008" FT /note="acronym: IYSV" FT /db_xref="taxon:60456" FT CDS 34..8655 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:C0KQW8" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015841" FT /db_xref="UniProtKB/TrEMBL:C0KQW8" FT /protein_id="ACM89280.1" FT /translation="MNLQSVHSSLDITDRINVFLNDLRDKLMNLSNTVRVKYKDGLDAV FT SSGLKAIMNMSCIIDEITEMKSSYYQSTTSIDQKEMEQKISVFLDRYNELELMRHDLFG FT VLASSRLHFSPKHRHDVVMKDCIMDYLEYCSVKEDISNRIEDLDSITSQLIFQHQTPDN FT YVIYKETTGEKACLMIYDWKVSVDTMTENKTSENYYTSIWKTFKDITIDGEPFLSKFPI FT FVTIVILQPMNFMPIVATTCRVLEEMRNSPYRTFVDRRNAASRTKLISAKNLRDLGGYD FT GEKLTEFYAECQAFKNLLMSSVGDYMNRTNEVFFSNWSFEYKNTTLKDNLMSHDVIDII FT KSLPNKTIKKDLMVHFIFGNYVFYYKTMSDLHRKDKFEGYKSNCKLMKVKPKETEEELK FT VYLENNEGLFESLYSEHMDKIKADMILKKSQEKEIKSIEESFNINAENYQSEYPGCFTN FT DLQETKTNFSVCWSPSTERLSIEDMNFNNSIIENFRKCFDDEEVLIHNRSYGGKSDQRQ FT FSNTLFRLVKACIKDLSRNTTGQTKVRAEDVVDIKDGSIKISRESKEKGWKEIGHVKTR FT NGNEFTLSEKVNKEVKTDFFKGLTIMNIDMGKKKKNEHKLNLINKLKESRVANEELMMK FT EGEYDVSSNSEVINMPLSSVSHNKKLIRHDNPDVKYWCDSMIQSMYALHGFDIRDEKSG FT KINSVYSEYCNDPGEFFSKGNLIETEVNISKNIHKVSQSLAVYSYSEDMMQLAKGLMVA FT DRFMRKTDFKILTCANTSMICLAFKGDGLNTGKSGVPYITLHKVPESLQPYFTSLYTKE FT LVVSFKSGDDYVNIMRPQRLNQVRLLSLFKSPSKVPVCFSQYCLLSKEVKRWISRKTIN FT LMDCPSNIVPFLKNILFSSVVIGTVTKLSRMGIFDFMRYAGFLPLSDYSNIKEYIAEKF FT DPDITNVVDCYFVSGIKTLLLKMEGTNLSNSIKPLTIDQENDMSGGIKDLNIVCPITGS FT TLKTIECLYNNVYLAIYMMPKSLHTHIHNLTSLLNVPAEWEVKFRTKMGFRLDEEIVPK FT KEMFNNSGPFSIDGALNVKTLFDYYLKTVDNVSSTRSNIESKEDFLSTPYKIKTLASSK FT KCSKADIIKNSEIKQCLINCLGKDPEKLSGKDEYVLKGVLKCFVEDKDALRNFMTLEEL FT DESEYFHYFSSLTSGENKTLMKTSYDKFYYNSHPITVESFIKVRYGHMSTTTVLKSKKV FT SEELYDLIKEYNKITTLDLDALENLGKGLSGNKVTFIQLLEFVLLKTRTNAGNTDFLVS FT VFEKMQRTKMDREIYLMSMKTKMMLYFIEHTYKHIAQSDPSEAISISGDYKIKTLASLS FT YDTITNYNTSLQKGLECKMAFLSADQSKWSASDLTYKYILAVLMNPVLTTGEINMMCEC FT ILMYVKLKRVCIPTDVFLNLKRGQNTYGSYGTAISSLTNNLETNTFPVSMNWLQGNLNY FT LSSVYHSCAMLGYEKALKTNKDFEFAVRWMVHSDDNATSVVVKGSITEFLLRFKCTNLS FT EFLFRSIQSHFKSYCITLNPKKSYASESEVEFISERIINGAVIPLYCRHLANCCTESSH FT NSYFDDLMSLSIHITMLLRKGCPNELISFAYAAIQCQALSIYSMLPGEENDIMSIGKDV FT GFPLTKKEIPTCVGGWMRAPVEMLSVLGPSSNDQYIYYKILIEFFRQKDFSTLKTQVNS FT LGYVTSKINELNKGIAKDELTKEDIKMICMVNLFKTSLMSEDSDSLNIGMKFQTMMTQI FT IKLPSYVSEGSLMKNSSFQDFCKLFPNLKRNSDMLNSLKRVQIDEDSMDCLSEDDAMLS FT RIQMEELYKHMAKHPEALLIAPMNDKDYILTNLYMYSSISKRNQMSNQSTEKLALDRIL FT RSKAKTFIDPNSNQMMTYKENMSSKLKEIMDKSANDYKIISTISDMMVKDMNFEMIISL FT IENSVANASIPKTNYNFRWFVTEKVPSVIEGSPGLIVMSAVYGMEYLVDLGLKRMPLTE FT SSICILHDVFGNRKTFDDVKNYLTSKSSEMKTKEFILADELKRGILSINYMIQSQNKLL FT SLNTCFSRKNFPFYSKYNLGKTFITNTLALWSTIYSRTTNINFYTNLNFVIDRSSRLIV FT SLQRDMILEKLLDCCSYVSDRTQSLFPDMKIEDIRNILSKLNFNSVNLLQRVVSEIKPV FT KRAISQVKTASHVTLSYRPQLMAMSKHAAWLYNFGYINERDFKFVIEQIRQSEVYYIKT FT DELDTHGYYVSGISYKIGIKTLLNYAQLEMKNKDIAIHLNSPYEFIREEDNKMWDTHVS FT SVYKLLQKLLIDKQNAIKTFLNMKVDLLPNEFCIHESSQKNLLIYINETNRVITLDKVK FT FKGKVKYNFCNDFTWSLMENNYNYMLRQAETGECFSDLYKTIDSGNSLMEKILKNLKSS FT LIYSSDAENMLSTAVQGIEDEENKNIFEDSLRQIYEITYKGLKECKSSEEFEIYLKENE FT FDDLVNMQKEMLETICQDLSDTDSRIQNVVDKLRVWSSSLSNFGELCVMLKFAMVNDSK FT GIRTYKANGVEFHSLSSSESILCSGYDIFEMLKLIKACEACHTSNSTLNLIAFRDIKSR FT KYVHPYRRKFGGSVIFNYPLKLNNDVMSRFYEHKTISLSDIQITESVREILGQNGFTVT FT GSNVKLESDMLELNPVTILDDHSTFDSVSRQMRLTKKKSSYLIPANTLLLGELMKFLML FT CIKGNEYDVQKMLSAHFDLSMERDDRMDSLIKTIMTLRASGYVQRYFGNTNEEEILLGV FT ATSLENFMILSTPGGEFQEPFDALRLINNSFSEKEKDKKLKILLRIRSYISSKLGYLNE FT QCIYKNITNLEINNLVFSSINYIDKEISELRTFDKAVYHNEFNEYLKHTEGASSD" XX SQ Sequence 8880 BP; 3333 A; 1374 C; 1629 G; 2544 T; 0 other; agagcaagtc gagcaacgaa attaaattcc aaaatgaatc ttcaaagtgt acacagctcc 60 ctagatatta cagatcgaat taacgtcttt ctgaatgatc taagggataa actcatgaat 120 ctatccaaca ccgttcgagt aaaatacaaa gatgggttag atgctgtttc ttcaggtctc 180 aaagcaatca tgaacatgtc atgtatcatt gatgaaataa cagaaatgaa atcttcttat 240 tatcagagta caacctctat tgatcaaaaa gaaatggaac agaaaatatc tgtcttcctt 300 gatagataca acgagcttga acttatgagg cacgacctct ttggggtttt agcaagctct 360 agattgcatt tttctccaaa acataggcac gatgttgtta tgaaagattg catcatggat 420 tatctagaat attgttctgt aaaagaagac attagcaaca gaatcgaaga tctagatagt 480 ataacttctc aattgatatt tcagcatcaa accccagaca actatgttat ttacaaagag 540 acaacagggg aaaaagcttg tttgatgata tatgactgga aggtctctgt ggacactatg 600 acagaaaaca aaacatcaga gaactactat acaagcatat ggaaaacatt caaagatata 660 acgattgatg gagaaccatt tctgtccaaa tttcccatat ttgtaactat agttatcctg 720 caacctatga acttcatgcc catagtggca acaacttgca gggttttgga agaaatgaga 780 aattctccat acaggacatt tgtagacaga aggaatgctg caagtagaac aaagctgatc 840 tcagctaaaa acttaaggga tttaggaggg tatgatggtg aaaagctcac tgagttttat 900 gcagaatgtc aagcattcaa gaatctatta atgtccagtg taggtgatta tatgaacaga 960 acaaacgaag ttttctttag caactggtca tttgaatata aaaataccac cctcaaagat 1020 aacctgatga gccatgatgt tatagacata ataaaatctt tgcctaataa gaccataaag 1080 aaagatctga tggtgcattt tatttttggg aattatgttt tttattacaa aactatgagt 1140 gatttgcata ggaaagacaa gtttgaaggg tataaatcca actgcaaatt gatgaaagtg 1200 aaaccgaagg aaacagagga ggaactcaaa gtttatttgg aaaacaatga gggcttattc 1260 gaaagtcttt actctgaaca catggacaag ataaaagctg acatgatatt aaagaaaagc 1320 caagagaaag agataaaatc tatagaagaa tctttcaata taaatgccga aaattaccaa 1380 tctgaatatc caggttgttt cacaaatgat ctacaggaaa ctaaaactaa tttttctgtt 1440 tgctggtctc catccacaga aagattatct atagaagata tgaatttcaa caacagcata 1500 attgagaatt tcagaaagtg ctttgacgat gaagaggttt tgatacacaa tagaagctat 1560 ggagggaaat ctgatcaaag acagttttct aacacactat ttagattagt caaagcttgt 1620 ataaaggact tgagtcgcaa tactacaggg caaaccaaag tcagagctga agatgttgta 1680 gatataaagg atggaagtat taaaatatca agagaaagca aagaaaaggg atggaaagaa 1740 ataggtcatg ttaaaaccag gaatggaaat gagttcacac tcagtgagaa agtcaataaa 1800 gaggttaaga cagatttttt caaagggttg accataatga atattgacat gggaaaaaag 1860 aagaaaaatg aacacaagct aaatcttatt aacaaattga aagaatctag agtagccaat 1920 gaggagctca tgatgaaaga aggtgaatat gatgtttcat ctaattctga ggttataaat 1980 atgcctttaa gttcagtatc tcataataaa aaactcataa ggcatgataa cccagatgta 2040 aagtattggt gcgactcaat gatacaaagc atgtatgcgc tgcatggatt tgatatcaga 2100 gatgaaaaat cagggaaaat aaattctgtg tattcagagt attgcaatga tccaggagaa 2160 ttcttctcaa aagggaactt gattgaaact gaagttaaca tttcaaaaaa catacataag 2220 gtttctcaat ccttagcagt atattcatac agtgaagata tgatgcaact ggcaaaaggg 2280 ttgatggtgg ctgatagatt catgagaaaa acagatttca aaatcttgac atgtgcaaac 2340 acaagcatga tttgcttagc atttaaaggt gatggtttga atacaggtaa atctggtgtg 2400 ccatatataa cattgcataa agttccagag tcacttcaac cttatttcac ttcattatac 2460 actaaagagc tagttgtgtc tttcaagtcg ggggatgatt atgtaaatat catgagacct 2520 caaaggttaa atcaagtcag attgctcagt cttttcaaat cacctagcaa ggtgcctgtc 2580 tgcttctctc aatattgcct cctaagtaaa gaagtcaaaa gatggatttc tagaaaaacc 2640 ataaatttga tggactgccc atccaacata gtgccctttt tgaaaaacat attgttttcg 2700 tctgttgtga taggcacagt aacaaagttg agcaggatgg gaatttttga tttcatgaga 2760 tatgcaggat tcctcccatt atctgattat tcaaacataa aagaatatat agctgaaaag 2820 tttgatcctg atataaccaa tgttgtagat tgctattttg tttcagggat caaaaccttg 2880 ctactaaaaa tggagggcac aaatctgagc aacagcataa aaccacttac catagatcaa 2940 gaaaatgata tgtctggggg tataaaagat cttaacatag tctgtcctat aactggatca 3000 actttaaaga caatagagtg tctgtataac aatgtttatt tggcaatata catgatgcca 3060 aagtctctcc acacccatat acacaatttg acatctttgc ttaatgtccc tgctgaatgg 3120 gaggttaagt ttagaactaa aatgggtttc agactagatg aagaaatagt gccaaagaaa 3180 gaaatgttca ataattctgg ccctttttcg atcgatggag cattaaatgt gaaaactctc 3240 ttcgattact atttgaagac tgttgacaat gtgagctcta caagatccaa catagaatct 3300 aaagaagatt tcttgtctac tccatacaag ataaaaacat tagcatcttc aaaaaaatgc 3360 tctaaagcag acataattaa gaactctgaa ataaaacagt gcttgataaa ttgcctaggg 3420 aaagatccag aaaaacttag tggcaaagat gaatatgtgc ttaaaggggt tttaaagtgt 3480 ttcgtggaag acaaagatgc tttaagaaat ttcatgacac tagaagaact agatgaatct 3540 gaatatttcc attactttag ctcactaaca tctggggaga ataaaacatt gatgaagact 3600 agctatgata agttttatta caatagccat ccaataacag ttgaatcatt tattaaagtt 3660 agatatggac atatgtcaac aaccactgta cttaaatcaa aaaaagtaag cgaagaactt 3720 tatgacttaa taaaagaata caataagatc acaacccttg atttagatgc attggaaaat 3780 ttaggaaagg gcttatcagg taataaagtg acttttattc aattgttgga gttcgttctc 3840 ttgaaaacaa gaacaaatgc tgggaataca gattttttag tttctgtttt tgaaaaaatg 3900 caaaggacaa agatggacag agaaatctac ttaatgagca tgaaaactaa gatgatgttg 3960 tatttcatag aacacacata taagcatata gcacaatctg atccatctga agcaatatct 4020 atatctggtg attataaaat aaaaacacta gcatcactat cttatgatac aataaccaat 4080 tacaacacat ctctgcagaa aggtttggaa tgcaaaatgg cttttctctc tgcagatcaa 4140 tcaaagtggt cagcatctga tttgacatac aagtacatat tggctgttct aatgaaccca 4200 gtactgacca caggagagat caacatgatg tgtgaatgca tactgatgta cgtcaagctg 4260 aaaagagttt gtatacccac agatgtgttc ttgaacctga agagagggca aaatacatac 4320 ggatcttatg gaactgcaat atcatcactg acaaacaatt tagaaacaaa tactttcccc 4380 gtatctatga actggttaca agggaatctg aactacttgt cttcagtcta tcattcctgt 4440 gccatgctag gttatgaaaa agcattgaaa acaaataaag atttcgagtt tgcagtgaga 4500 tggatggtac attccgatga taacgcaact tctgttgttg ttaaagggag tattactgag 4560 ttcctgttga gatttaaatg cactaacctt tctgaatttt tattcagaag tattcaatct 4620 catttcaaaa gttactgcat aaccttaaat cccaagaaaa gctatgcttc ggaatcagaa 4680 gtagaattta tatctgaaag gataataaat ggagctgtga tacctttgta ctgcaggcat 4740 ttagcaaact gttgcacaga atcatctcac aacagttatt ttgatgattt gatgtcactg 4800 tctatacata taacaatgtt gttgaggaaa ggctgtccaa atgagctaat ctcatttgct 4860 tatgcagcca tacaatgtca agcacttagc atatactcaa tgctgcctgg tgaagagaat 4920 gatataatgt ccataggaaa agatgtagga ttccctttga ctaaaaagga aattccgaca 4980 tgtgttggag gctggatgag agcacctgtg gaaatgctat ctgtattggg tccatcttcc 5040 aatgatcaat atatttatta taaaatattg atagagtttt ttaggcaaaa agatttctcg 5100 acactcaaaa cccaagtcaa tagtttaggt tatgtgacat ctaaaatcaa tgaactaaat 5160 aagggaatag caaaagacga acttactaaa gaagatataa aaatgatttg tatggtaaac 5220 ttgttcaaaa ctagcttaat gtcagaagat agtgacagtt taaatatagg aatgaaattc 5280 caaacaatga tgacccagat aattaaactc ccaagctatg taagtgaagg ttccttaatg 5340 aagaactcta gcttccaaga tttctgtaag ctatttccaa atctgaaaag gaattcagat 5400 atgctgaatt ctttaaaaag agttcagatc gacgaagaca gcatggattg tttatctgaa 5460 gatgacgcaa tgttatcaag aatacaaatg gaagagttat acaagcacat ggcaaaacac 5520 ccagaagccc ttttaatagc tccaatgaat gataaagatt acatactaac caatctgtac 5580 atgtatagca gcataagtaa gagaaaccag atgtctaatc aatctacaga aaagctggca 5640 ctagatagga tactgagatc aaaagcaaag acctttattg acccaaactc taatcagatg 5700 atgacataca aagagaatat gtcatccaaa ttgaaagaaa ttatggataa atctgcaaat 5760 gattataaaa ttatctcaac tatttccgat atgatggtga aagatatgaa ttttgaaatg 5820 atcatatctc taatagaaaa ttcagttgcc aatgcatcta ttccaaagac aaattataat 5880 ttcagatggt ttgtcacaga aaaagtacct agtgtaatag agggatcacc tgggttgatt 5940 gtaatgtctg cagtatatgg aatggaatac ttggtagatc taggattgaa aagaatgccg 6000 ttaactgaaa gttcaatctg tattttgcat gatgtatttg gcaataggaa gacatttgac 6060 gatgtaaaaa actacctgac atctaaaagt tcagaaatga aaactaaaga attcattcta 6120 gctgatgagt taaaaagagg aatactgtct ataaattata tgatacaatc ccaaaataaa 6180 ttgttgtctt taaatacatg cttttctagg aagaatttcc ctttttattc taagtacaat 6240 ttagggaaaa catttatcac aaacactttg gcattatgga gcacaatata cagcagaacc 6300 acgaatataa atttctacac caacttaaac tttgtaatag atcgaagttc cagattgata 6360 gtttcgcttc aaagagacat gattctggaa aaactgcttg attgctgctc atatgtttct 6420 gacagaactc agagcttgtt ccctgacatg aagattgaag acattagaaa cattctatca 6480 aaactcaatt ttaactctgt gaatctgctc caaagagtgg tgtcagaaat caagcctgta 6540 aagagagcca tttcccaagt aaaaactgca agtcatgtga ccctgtctta tagacctcag 6600 ctaatggcca tgagtaaaca tgcagcatgg ctatacaatt ttggttatat caatgaaaga 6660 gattttaaat ttgtgattga gcagataaga cagagtgaag tatattatat caaaacagac 6720 gaactagata ctcatgggta ttatgtttca ggcatttcat ataaaatagg aataaaaact 6780 ttgctgaatt atgcgcagct agaaatgaaa aacaaggaca ttgcaatcca tctgaactct 6840 ccttatgaat tcattagaga agaagataac aaaatgtggg acacacatgt aagttctgtt 6900 tacaagcttt tgcagaaact actcatagat aagcagaatg ccataaagac atttttgaac 6960 atgaaagttg atctgttgcc aaatgaattc tgcatacatg aaagctcaca aaaaaatctg 7020 ctaatataca taaatgaaac taatagggtg atcacattgg ataaagttaa attcaagggc 7080 aaagtaaaat ataacttctg caatgatttc acttggtctc tcatggagaa caattataat 7140 tatatgttaa gacaagcaga aactggagag tgcttttcag atctctacaa aacaatagat 7200 agtgggaata gtttgatgga gaaaatatta aaaaatctta aatccagctt aatttatagt 7260 tcagatgcag aaaatatgct gtcaacagct gttcaaggaa tagaagatga agagaacaaa 7320 aacatttttg aagattctct tagacagatt tatgagataa cgtacaaagg cttaaaagaa 7380 tgcaagtctt cagaagaatt tgaaatatat ctgaaggaga atgagtttga cgacctggtt 7440 aacatgcaaa aagaaatgtt ggaaacaatc tgccaagatc tctccgacac agattctaga 7500 atacagaatg tggttgacaa acttagagtc tggtctagca gtctttcaaa ctttggagag 7560 ctatgtgtaa tgttaaaatt cgctatggtg aatgattcta agggaataag aacttacaaa 7620 gcaaacggtg ttgaatttca ctcactttct tccagtgaat ctatactatg ttcaggttat 7680 gatatctttg aaatgctgaa gcttataaag gcctgcgagg catgtcatac aagtaactca 7740 accctgaatt taatagcttt tagggatata aaaagcagaa aatatgtcca cccatatcgc 7800 agaaaatttg gaggcagtgt tattttcaat tatccactga agcttaacaa tgacgttatg 7860 tcgagatttt atgaacacaa gacaatttca ttgagtgaca tacagataac agaatcagtt 7920 agagaaatcc tcgggcaaaa cgggtttaca gtcactggtt caaacgtcaa attagagtct 7980 gacatgctag aactaaaccc tgttacaata ctggatgatc acagcacttt tgacagtgtt 8040 tctagacaga tgagattaac aaaaaagaaa agttcatatt tgattccagc aaacacactc 8100 ctactcggag aattaatgaa gtttttgatg ttatgcatta aaggaaatga atatgatgtg 8160 caaaaaatgc tgagtgcaca ttttgacctc tcaatggaaa gagatgaccg aatggatagc 8220 ttaattaaaa ctataatgac attgcgtgca agtggttatg tccagagata ttttggcaac 8280 acaaatgaag aagagatttt gctgggtgta gctacaagtt tagaaaactt catgatacta 8340 tcaacaccag gtggtgaatt tcaagaacca ttcgatgcac taagactgat aaataattct 8400 ttttcagaga aagaaaaaga caaaaagttg aaaatacttt taagaataag gtcttatata 8460 tcatctaaat taggttacct aaatgagcaa tgtatataca aaaatatcac aaatttagaa 8520 ataaacaatt tggttttcag ctcaatcaat tacatagata aagaaatttc agaattaaga 8580 acttttgata aagcagtcta tcacaatgaa tttaacgagt atcttaaaca cactgaaggt 8640 gcaagttctg actgaacctc atggcaatag tgatgatagc acaaagtcag aacagttata 8700 gattgacaaa aaatattcaa atatatgaaa atatcacatt tatcaggttg aaaaagctgt 8760 ttgagcataa aattcaatag gatgcaaaac gatagaaaag cctaaaatag tatttctgaa 8820 aacattttcc catgattcag catagctgaa gatgttttta atttgttgct cgattgctct 8880 //