Dbfetch

Dbfetch

ID   FJ621515; SV 1; linear; genomic RNA; STD; VRL; 387 BP.
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AC   FJ621515;
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DT   22-JUL-2009 (Rel. 101, Created)
DT   09-MAR-2010 (Rel. 104, Last updated, Version 2)
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DE   Melon necrotic spot virus isolate HN-1 p7A gene, complete cds; p89 gene,
DE   partial cds; p7B gene, complete cds; and p42 gene, partial cds.
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KW   .
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OS   Melon necrotic spot virus
OC   Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus.
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RN   [1]
RP   1-387
RX   DOI; 10.1111/j.1365-3059.2009.02208.x.
RX   AGRICOLA; IND44334960.
RA   Herrera-Vasquez J.A., Cordoba-Selles M.C., Cebrian M.C., Rossello J.A.,
RA   Alfaro-Fernandez A., Jorda C.;
RT   "Genetic diversity of Melon necrotic spot virus and Olpidium isolates from
RT   different origins";
RL   Plant Pathol. 59(2):240-251(2010).
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RN   [2]
RP   1-387
RA   Herrera-Vasquez J.A., Cordoba-Selles Md.C., Cebrian Md.C., Rossello J.A.,
RA   Jorda C.;
RT   ;
RL   Submitted (13-JAN-2009) to the INSDC.
RL   Ecosistemas Agroforestales, Universidad Politecnica de Valencia, Camino de
RL   Vera s/n, Valencia, Valencia 46022, Spain
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DR   MD5; 9080fee9f488dc5e11c21a7d33025a05.
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FH   Key             Location/Qualifiers
FH
FT   source          1..387
FT                   /organism="Melon necrotic spot virus"
FT                   /host="melon"
FT                   /isolate="HN-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Honduras:Choluteca"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:11987"
FT   CDS             1..198
FT                   /codon_start=1
FT                   /product="p7A"
FT                   /note="movement protein"
FT                   /db_xref="GOA:C7ATK5"
FT                   /db_xref="InterPro:IPR007982"
FT                   /db_xref="UniProtKB/TrEMBL:C7ATK5"
FT                   /protein_id="ACT53329.1"
FT                   /translation="MDSQRTVEQTHPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT                   VMGASTYIADKIKVTINFNF"
FT   CDS             <1..22
FT                   /codon_start=2
FT                   /product="p89"
FT                   /note="putative RNA-dependent RNA polymerase; produced by a
FT                   readthrough of the p29 amber codon"
FT                   /protein_id="ACT53328.1"
FT                   /translation="WTLNEL"
FT   CDS             202..387
FT                   /codon_start=1
FT                   /product="p7B"
FT                   /note="movement protein"
FT                   /db_xref="GOA:Q6VRG0"
FT                   /db_xref="InterPro:IPR009575"
FT                   /db_xref="UniProtKB/TrEMBL:Q6VRG0"
FT                   /protein_id="ACT53330.1"
FT                   /translation="MACCRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN
FT                   SSVKTQYVGISTNGDG"
FT   CDS             374..>387
FT                   /codon_start=1
FT                   /product="p42"
FT                   /note="coat protein"
FT                   /protein_id="ACT53331.1"
FT                   /translation="MAMV"
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SQ   Sequence 387 BP; 115 A; 77 C; 84 G; 111 T; 0 other;
     atggactctc aacgaactgt agaacaaact catcctcggg gaagaagtaa agaacgtggt        60
     gacagcgggg gaaaacagaa gaactcaatg gggcgaaaga tagccaatga cgctatctct       120
     gaatcgaagc aaggggttat gggtgctagt acatacattg ctgataaaat taaggtgact       180
     atcaacttta atttttaatg tatggcttgt tgccgctgtg actccagccc cggggattac       240
     tctggagcat tgcttatatt atttatctca ttcgttttct tttatattac ctcgcttagc       300
     ccgcaaggaa atacttacgt tcatcacttc gataattctt ccgttaaaac acaatacgtt       360
     ggcatctcta caaatggcga tggttaa                                           387
//