ID   FJ618537; SV 1; linear; genomic RNA; STD; VRL; 1609 BP.
XX
AC   FJ618537;
XX
DT   24-FEB-2009 (Rel. 99, Created)
DT   24-FEB-2009 (Rel. 99, Last updated, Version 1)
XX
DE   Nerine yellow stripe virus polyprotein gene, partial cds.
XX
KW   .
XX
OS   Nerine yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1609
RA   Cohen D., Pearson M.N., Cowell S.J., Jones D., Blouin A., Lebas B.S.M.,
RA   Shiller J.B., Clover G.R.;
RT   "A survey of viruses of flower bulbs in New Zealand";
RL   Unpublished.
XX
RN   [2]
RP   1-1609
RA   Shiller J.B., Cohen D., Pearson M.N., Cowell S.J., Jones D., Blouin A.,
RA   Lebas B.S.M., Clover G.R.;
RT   ;
RL   Submitted (11-JAN-2009) to the INSDC.
RL   Ministry of Agriculture and Forestry, 231 Morrin Rd, St Johns, Auckland,
RL   New Zealand
XX
DR   MD5; 34a75c7a29e689f4822952ca4ddd8291.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1609
FT                   /organism="Nerine yellow stripe virus"
FT                   /host="Amaryllis sp."
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collection_date="03-Aug-2005"
FT                   /db_xref="taxon:424679"
FT   CDS             <1..1418
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /db_xref="GOA:C0KKZ0"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:C0KKZ0"
FT                   /protein_id="ACN22472.1"
FT                   /translation="SGQPSTVVDNTLMVVIAMQYSLLLNGIELEQQDSVCKYFANGDDL
FT                   LIAIEPTYATRLYDSFACNFKQLGLNYDFSNRVLNKEELIFMSHKGVLVDGLYVPKLER
FT                   ERIVSILEWDKSSEPEQRLEAICAAMIEAWGYKDLLHEIRKFYAWVLEQAPYSELARNG
FT                   KAPYLAETALRHLYTNSETKNEELLNYIEAFQSDVSLDEEIIDVMFQSQETINAGAELA
FT                   RAQQAQTPATPSQDVNVGTSGQTALIQSKIFSKKLRIMKVKGKTTLDLEHLLHYKPIQE
FT                   DLFNTKASQQQFENWHTKVQEAYDVDDKQMGILMNGLIVWCIENGTSSELKGTWGMDFG
FT                   DQQVEYDIQPLIQHSQPTFRQIMRHFSKIAEAYIAMRNQEERYMPRYALQRGLTDISLA
FT                   RYGFDFFDTTAATPQRAREAVMQMKAAAVRGKETRLFSLDGNISANTENTERHTVEDVT
FT                   QDMHSLLGVRGIK"
FT   3'UTR           1419..1609
XX
SQ   Sequence 1609 BP; 525 A; 270 C; 363 G; 451 T; 0 other;
     acagcgggca gccttcaacg gtagtggata acacacttat ggtcgtcata gccatgcaat        60
     attcactact gttgaatggc attgaattag agcagcaaga ctctgtttgt aaatattttg       120
     ccaacggtga tgatttgctc atagctatag aaccaacata tgcaactaga ttgtatgata       180
     gttttgcatg taattttaaa cagttgggtt tgaactatga tttctcaaat agggttttaa       240
     ataaggaaga gttgattttt atgtctcata agggtgtttt ggttgatggc ttgtatgtac       300
     caaagctcga gcgtgagcga atcgtctcaa ttcttgaatg ggacaagagt tcagaacctg       360
     agcaacgatt agaggcgatt tgtgctgcta tgattgaggc ttggggttat aaggatttgt       420
     tgcatgaaat caggaaattc tatgcttggg tcctcgagca ggctccatac tctgaattag       480
     ctcgtaatgg aaaggcacca tatttggctg agacagctct aaggcatcta tatacaaatt       540
     ctgaaacaaa gaatgaggag ctattaaatt acattgaagc ttttcaatct gacgttagtc       600
     ttgatgagga aatcattgat gtgatgtttc aatctcaaga aactatcaat gctggagctg       660
     aattagctag agcgcaacaa gcacaaacac cagcaactcc aagccaggat gtgaatgtgg       720
     gaacttctgg acaaactgca ctaatacaat caaagatatt ctcgaagaaa cttcgaatca       780
     tgaaggttaa aggaaaaaca acacttgatc ttgaacatct tttgcattat aaaccaattc       840
     aagaggactt gttcaataca aaagctagtc aacagcaatt tgagaactgg cacacaaaag       900
     tgcaagaagc atatgatgtt gacgacaaac aaatgggaat tttaatgaat ggattgattg       960
     tttggtgtat cgagaacgga acttcttctg aattgaaagg aacatgggga atggattttg      1020
     gggatcaaca agtcgaatat gatattcaac ctttgataca gcacagccag ccaacttttc      1080
     gccaaataat gagacatttt agtaagatag ctgaagcgta tatagctatg cgaaaccaag      1140
     aagaacgcta tatgccaaga tatgcgcttc agaggggcct cactgatatt agcctagcac      1200
     gatatggttt tgatttcttt gatacaacag cagcaactcc gcaacgggca cgggaggccg      1260
     ttatgcaaat gaaagcagct gctgtgcgtg gaaaagaaac aagattattt tcacttgatg      1320
     gtaatattag tgcaaacaca gaaaacactg agcgacatac tgttgaggac gtcactcagg      1380
     atatgcactc acttcttggt gtgaggggta taaagtgagt aagtggggag cttcttgtat      1440
     cctatagata aattaaggtc ttattttatc tatttgtatc caggaatcct gtagttttgg      1500
     ctacccgtgt ggttttgtcg gttgtagtgt gattgtatca cctcaaacag cggactcaat      1560
     tacacattcg gtagggaaat ctataaggag acaaaaaaaa aaaaaaaaa                  1609
//