ID FJ617224; SV 1; circular; genomic DNA; STD; VRL; 7558 BP. XX AC FJ617224; XX DT 02-MAR-2010 (Rel. 104, Created) DT 02-MAR-2010 (Rel. 104, Last updated, Version 1) XX DE Citrus yellow mosaic virus isolate Nagri, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7558 RA Baranwal V.K., Gupta K.N., Haq Q.M.R.; RT "Genome characterization of Citrus yellow mosaic virus associated with RT Sathgudi sweet orange"; RL Unpublished. XX RN [2] RP 1-7558 RA Baranwal V.K., Gupta K.N., Haq Q.M.R.; RT ; RL Submitted (10-JAN-2009) to the INSDC. RL Advanced Center for Plant Virology, Division of Plant Pathology, Indian RL Agriculture Research Institute, Pusa Road, New Delhi, Delhi 110012, India XX DR MD5; ed767b69ba570cf7f69402f2aa6be45f. XX FH Key Location/Qualifiers FH FT source 1..7558 FT /organism="Citrus yellow mosaic virus" FT /host="Citrus sinensis (L) Osbeck" FT /isolate="Nagri" FT /mol_type="genomic DNA" FT /country="India:Nagri, Andhra Pradesh" FT /db_xref="taxon:174178" FT CDS 231..662 FT /codon_start=1 FT /product="unknown" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:D3TZT1" FT /protein_id="ACO55656.1" FT /translation="MSRIWEEAIQKWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLSLFSRVSIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKSEVKALVTE FT IAKQPKLVEAQALQLTESLNQKLDRVETLIAKVERWVHS" FT CDS 659..1072 FT /codon_start=1 FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:D3TZT2" FT /protein_id="ACO55657.1" FT /translation="MTYQNTEKTPTYKRALEATEPINSPALGFINPEDYSGGITGTKAL FT IKQNNLLIQLVVELSVNVNSLSEQVAQLTRQLGKQPQQGSSTATLPDDLIDKLKNLSLG FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ" FT misc_feature 1069..6393 FT /note="nonfunctional polyprotein due to mutation" FT CDS 1973..2467 FT /codon_start=1 FT /product="unknown" FT /db_xref="GOA:D3TZT3" FT /db_xref="UniProtKB/TrEMBL:D3TZT3" FT /protein_id="ACO55658.1" FT /translation="MALFLLDSTVTNQLQIQPLLLIISMMRKYPLMKMKSRSVIIPSLY FT GGKMTRYGIHLVNLRANLIFMSVIPDLHMLYKILLILLLLGGMTLTMIHPPQVLLIKSL FT LTSPLLPLLMRMMTCPISNILLNNHLSLLLHRISPILFRKVVGNLPTLTPHFNHHSTFI FT R" FT CDS 3953..4264 FT /codon_start=1 FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:D3TZT4" FT /protein_id="ACO55659.1" FT /translation="MIVKSSPLMKEIQTAMLFSAFQREKKLEQLKNNVLCSRRNAMELI FT GLVKEVATRISCKSLKRSTIVSMNGRRINPLMIQHMFDVTLARGKPLRELAYIASYAT" FT CDS 6593..7057 FT /codon_start=1 FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:D3TZT5" FT /protein_id="ACO55660.1" FT /translation="MSRRIPGRFREIGSSSSGEERGTTGNARRICLPVDQISGPHYPLA FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLREYEDCALQECIQSARQLVALH FT QHKLAYIRGKATRDNAYADRLPTCNRDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7558 BP; 2326 A; 1621 C; 1668 G; 1943 T; 0 other; tggtatcaga gcttggttat gttcttacaa cgatgggagc ttaagttctt ccattaggtc 60 tgaggaaaga gttggttgta tggtgtgttt agttcctatc tgtattgtta ttcctgtgtt 120 ccttattttg aaaacgatca tcgcgaaaag ggtgaaggca ctatatctgg cagcgagagg 180 agagtaagtc cagtgaaacc cttcgcatga cgctaaaggt gatctaatct atgtctagaa 240 tttgggaaga agcaatacag aaatggtatg agacatccca tacagctaat ctcgagtact 300 tagatctagc ttcaaaacca aaagtttcca attcagaaat ttcacacaac cttgctgtag 360 tttatgatcg tttgagtctg tttagccgtg tctctattaa aaatttcaaa agtatccaag 420 aaaccctaga aaaacaagac cttagaattc aaaagcttga gtctagtttg aaaaccttaa 480 ccagtgagtt tatagcccat aaacctttgt ccaaaagtga ggtaaaagcc ttagtcacag 540 aaattgccaa acagccaaag cttgttgaag cacaggccct tcagttgacc gaatctctta 600 accaaaagct tgatagggtt gaaaccctaa tagctaaggt tgaacggtgg gttcattcat 660 gacctaccag aatactgaaa agactcccac atacaaaaga gctttagaag caaccgagcc 720 tatcaacagt cccgccctag gttttataaa tccagaagat tattcaggag gcattactgg 780 tacgaaggct ttgattaagc aaaacaacct gctcattcaa cttgtggtgg aactttctgt 840 caacgtcaac agcttatctg aacaggttgc tcaacttaca aggcaacttg gaaagcaacc 900 ccagcaaggc tcatcaacag caaccttacc tgacgatttg attgacaaac tcaagaacct 960 ttccttaggt actgagaaaa agaaggaaaa gcgtggtacc ttctacgctt acaaagaccc 1020 atacctgatc tacaaggaag aggtagaaaa gttaaagaag caacaacaat gagtaccagt 1080 cgtgctcgta cagttataga gcaactccct ccggctacaa cagctcgggt ggaagaaagg 1140 gataatactc ctctctatga tgaccaaatc agagattata ggcagtggca gcggcggcgg 1200 cataacatgg ggcggagatg gaatcagttg ataggacgac cctacaatca gaccttggaa 1260 caggttgtgg accctgaagt agctttacag ctttcaatgc aggagcgtgc cagactagta 1320 ccagcagagg tactttacag atcaagaact gatgatcggc accatcaagt ctacattcac 1380 aggtcagagg aggctatcct ttgtgtagat ggtgatcaag ttgaccggtt actaattcaa 1440 ccggaaagtg ctgaacagtt aagcaggagc ggtatgtcct tcattcatat gggcatagtt 1500 caggttcgga tccagatctt acacagacag catgagggaa caacagccct tgtggtgttc 1560 agagacaatc ggtggcaagg agaccagtca atatttgcca ccatggagct tgatttaact 1620 aaaggtatgc agatggtgta cataatcccg gacaccatga tgacagtcag agacttctgc 1680 cggaatgttc aaatttccat attaacaaaa ggatatggga attggcagaa tggcgaggca 1740 aatctgcttg ttacaagggg aattgttgga cggttatcaa atacccctaa tgtggccttt 1800 gcttatcaga tccaaaatgt tactgactac ttggtcagtc atggaattca ggccctgcca 1860 ggacggcgat attctgctgc agatgtacag ggccaacaat ggttcctaag accatccaat 1920 gtcccagcag tcccaatggc ccctaccaac gtggatacaa gaaacatgat tgatggctct 1980 atttctctta gattcaacag ttaccaacca gctccagatc caacccctgt tgcttataat 2040 cagcatgatg aggaagtacc ccctgatgaa gatgaagagc agatccgtaa tcataccatc 2100 gctttatggc gggaagatga cgaggtatgg gatacacttg gtgaaccttc gggcaaattt 2160 gatttttatg tccgttatac ccgacctgca catgctctac aagatcctgc tcatattgtt 2220 gctactgggt gggatgactt tgacaatgat ccatccacct caagtccttc taataaaatc 2280 cttacttacc tcaccccttc ttcctcttct gatgaggatg atgacatgtc ctatctccaa 2340 tatcttgctc aacaatcacc tgtcccttct cctacacagg atttcaccaa tcctttttcg 2400 gaaggtggtg gggaatctac ctacccttac ccctcatttc aaccaccatt cgaccttcat 2460 cagatgactc aatatggtac tttagcaact tggagtggat atgatgctat gagtcaatca 2520 aacagtcctt catcacactc agatgctatt caacatctta atttccagca cccaagtgag 2580 gatactgtcc ttgattttga cagatattct tttacaacaa gtgaggatga cgtggttcaa 2640 tcagcctgga tctctgaaaa tctatttcgt gaaaacaccg gaaacggtga agttcacaat 2700 cttgttccac ctagacccga cacccctcgg ggtgatgagg tcaaaggaac tcaggaatcc 2760 atggcccata ctgttgcagt aaccacagag gaatcaaaac atgaggctga atttgactat 2820 ccggcttttg ccagattaca agcccatgaa gagtcagggc ggcccaaacc caaaactgag 2880 aaagtcttat cctcagcaat ttcttcatat accccaccaa cggatactgc aatgacacct 2940 gttgcgtacc ccccagccca aaatatagcc agcccaagtt acaatccaag cccacaaatg 3000 cccatgttcg aagggtatta tcccaaaagg ccaaatttca agagggataa tcatgccttt 3060 atcagtcttc cctcggccca acaaaatact ggggctttat tcattatgcc tcaacaaatt 3120 ggcctgtttc atgaggtttt tacttcatgg gaagcaataa ccaaggccta tgttgctcaa 3180 cagggtatca cagacccaag ggataaagcc gatttcattg aaaacatgtt gggtccaaca 3240 gaaaagataa tttggactca atggcgtatg ggctacgccg atgaatatga gaaccttgtt 3300 acaactgctg atggtcgtga gggtactcaa aatatactct ctcagatgcg aagggtcttt 3360 tccttagaag atccagccac aggttcaact gcagtccaag atgaagccta cagagatttg 3420 gagaggctta cttgtgattc tgttaagcat atagtccaat acttaaatga ctttatgcgg 3480 attgcagcaa agactgggcg tatgttcata ggtccagagt taagtgagaa attatggctt 3540 aaaatgccag gtgacttagg ccaaaggatg aagaaggcct atgaggagaa acatccaggg 3600 aacattgtag gtgtttgccc tcggattcta tttgcttata agtatcttga aggcgagtgt 3660 aaagatgcag cgttcaggcg ctccttgaag aacctatctt tttgcagctc aatccctatc 3720 ccaggttatt atggtggaag aagtggagag aagcgttatg gtgtaagacg cacaaccact 3780 tataaaggga aaccccatag cacacatgcg agaattgaga aaacaaagca tttgcgcaat 3840 aaaaaatgca agtgttatct ttgtggagaa gaacgtcact tcgcccgtga atgtccaaat 3900 gaccggcgaa atgtgaagcg agttgcaatg tttgaaggat tagatctccc agatgattgt 3960 gaaatcgtct ccattgatga aggagatcca gacagcgatg ctattttcag catttcagag 4020 ggagaagaaa ctggagcaat tgaagaacaa tgttttgtgt tccaggagga atgcaatgga 4080 acttattggc ttggtaaaag aggtggctac caggatctcg tgcaaatctc taaagagatc 4140 tactattgtc agcatgaatg ggaggagaat caacccattg atgatccagc atatgttcga 4200 tgttaccctt gcaagaggga aaccactcag agagctcgct tacattgcaa gctatgccac 4260 ataacatcct gtcttatgtg tggccccacc tatttcaaca aaaagattac tgtccagcca 4320 atacctcaag cacccttcaa ccaaaagggg ttgctacagc aacaacagga atacatcgcc 4380 tggtgcaata acgagattgc cagattaaag gaagaagttg ctttttataa gcaacttgcc 4440 caggaacgag agttgcaatt acaacttgag cagtctagaa aagaactagc aggagcggac 4500 tctcgcagac gaaaagacaa aggagtagtg attgatgaag gatcatgcta cttcaaccca 4560 gaagaaacaa ccagtatagt tgctcacggg gatacgcagg ttaccaaaac tcgacctgtg 4620 aaaaatatgt tatacaacat ggatgtgcga atggagattc caggcatccc agcttttaca 4680 gtaaaggcaa ttttagacac aggagcaaca acctgctgca ttgacagtag aagtgtgcca 4740 aaagatgctc ttgaggagaa ttcgtttgtg gtgaatttct caggcatcaa ctcaaaacag 4800 caagttaagc agaaaattaa ggctggaaaa atgttcatta gtgagcatta cttccggatt 4860 ccatattgtt acagcttcga gatgcaaatt ggcgatggca tccaactcat tctcggatgc 4920 aactttatac ggagcatgta cggaggtgta cgattagagg gtaatacaat aaccttctac 4980 aagcagatca cgagtatcaa caccagactt gctgcacctc tcctcaagca ggatgaagag 5040 gaaaaggacg aagagtttaa cctagatgag cacaggttga ttcaagaaat ggttgcatac 5100 tctactgagc ggccatttgt tcatttccaa caaaaatttg cagggcttat tcaagagtta 5160 aaggcccagg gatacattgg ggaagagcct atgaagtatt gggccaaaaa ccaagttgtt 5220 tgccatctgg acattaaaaa cccagatatg gtaattgaag atcgcccact gaagcatgtg 5280 acaccccaga tggaagaaag ctttcgcaag catgtggaag ccctgttaaa aataggagca 5340 atccgaccca gtaaaagtcg acacagaacc acagctataa tagtcaactc tggaaccagc 5400 atagacccta tcacagggaa ggaggttaaa ggaaaggagc gaatggtctt taactataaa 5460 aggttaaatg acctaactaa taaagatcaa tacagccttc ctggaatcca gacgattctg 5520 cagagattaa aggggagcac aatattttcc aaattcgacc taaaaagtgg ctttcatcag 5580 gtagcaatgc atccagattc aatagaatgg acagcttttt gggtgcccag cggtctttat 5640 gaatggttag ttatgccatt cggattaaag aatgctccag cagtttttca gaggaaaatg 5700 gatcactgtt tcaaaggcac ggaggccttt attgccgtct acatcgacga catcctagta 5760 ttctcaaaga ctgaacagga tcatgaggag catttacaga ttatgctctc tatatgtcaa 5820 aagaatgggc ttattctaag cccaacaaag atgaaaattg cccaagctga aattgaattc 5880 cttggggcaa tcattcacaa agggcttatt aagctgcagc cccacattgt tcaaaagttg 5940 ctcactttta ccaacaagca acttgaggag gttaaagggc ttagatcatg gctaggcctg 6000 ctaaactatg caagaagcta tattccccac atgggccgtc tacttagccc attatatgcc 6060 aaagtcagcc caactggtga gcggagaatg aacaggcaag attgggctct gattgacaaa 6120 ataagagccc aagtccaaaa tttaccagcc ctagagctac cgcctgcaga ctgtttcatc 6180 atcattgaaa cggatggatg catggatggt tggggaggtg tctgcaaatg gaagctagca 6240 cagtatgacc caaggagttc agaaagggtt tgtgcttatg caagtggaaa gttcaaccca 6300 ccaaaatcaa caattgatgc ggaaatacat gcagtgatga acagcctcaa caactttaaa 6360 atctactacc tagacaatct agcttatgtt taaggactga ctgtcaagct attattagct 6420 tctttaataa gtccaatgtc aacaaaccgt ctagggttag atggattgct ttcacagatt 6480 tccttactgg tctaggaatt cctgtaaata tagagcacat agatggaaag aataaccatc 6540 tggctgatgc tctgtccaga ttagtaactg gttttgtttt tgcagaacca caatgtcaag 6600 acgaattcca ggacgattta gagaaattgg aagcagctct tcaggagaag aaagaggcac 6660 cacaggcaat gcacgcagaa tatgtctccc tgttgaccaa atcagcggac cgcattaccc 6720 tctcgctctg ctctacgagg ggctcgtctc tcagcagaac ctactcatgc aggccaggca 6780 aagaaccaat gaaggcctta atctgcgaac agaagtcatg ccaatccaaa ggcgacttag 6840 ggaatacgag gactgtgcac tccaagagtg cattcaatca gcaagacaac tggtggccct 6900 ccaccagcac aaactcgctt acatcagagg caaagctaca agggacaacg catatgccga 6960 taggctaccc acatgcaatc gggaccacga gcaactgtgt gaagtggtcg agttgttaga 7020 aggaatctcg gaaagaatca gcgatacagc tgtctaggac agctggcttc aattatggag 7080 cgtgatggac ccccccgcaa taatccaaag tttggtgtgc ttttagtagt acgtctttat 7140 ggaccactac tttattgtaa taattgatgc tttttgtagt gcgctcttag tgcgctctac 7200 tttatgcttt tgcttttgta agtgcgctgt aagtgcgcct gtcttccttc agatgcttat 7260 cctttaagca tcttttgctt tttgcgtggc atcctttagt tcacaattta aagaatgacg 7320 atggggcccg agatgtgcac ccggttctct aaattgccta tataaggata tgccatagcc 7380 ttgtttttgc aagtcaggaa tacctgagca taacttggct aagcaaaagt ttgtaagtgt 7440 tctaagcctt tatttgtaag ctttctgttt tgttttaata aaatctctcg tccatcgttg 7500 tgaacacata ttgtttgtat ttattgtatt attttatttg ttgtggtggt aatcgtaa 7558 //