ID   FJ612602; SV 1; linear; genomic RNA; STD; VRL; 2447 BP.
XX
AC   FJ612602;
XX
DT   08-FEB-2009 (Rel. 99, Created)
DT   08-FEB-2009 (Rel. 99, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate PepMV-No RdRp (RdRp) gene, partial cds; TGB1
DE   (TGB1), TGB2 (TGB2), and TGB3 (TGB3) genes, complete cds; and CP (CP) gene,
DE   partial cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2447
RA   Hasiow-Jaroszewska B., Borodynko N., Pospieszny H.;
RT   "European strain of PepMV";
RL   Unpublished.
XX
RN   [2]
RP   1-2447
RA   Hasiow-Jaroszewska B., Borodynko N., Pospieszny H.;
RT   ;
RL   Submitted (09-JAN-2009) to the INSDC.
RL   Virology and Bacteriology, Institute of Plant Protection, National Research
RL   Institute, Wegorka 20, Poznan, Poland
XX
DR   MD5; 825900d6616958f882a19de26543edba.
DR   EuropePMC; PMC3132167; 21702943.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2447
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PepMV-No"
FT                   /mol_type="genomic RNA"
FT                   /country="Poland"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:112229"
FT   gene            <1..510
FT                   /gene="RdRp"
FT   CDS             <1..510
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp"
FT                   /note="polymerase"
FT                   /db_xref="GOA:B9VWI0"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:B9VWI0"
FT                   /protein_id="ACM50749.1"
FT                   /translation="MRLSGEGPTFDANTECSIAYTATRYHLDSTVKQVYAGDDMALDGV
FT                   VQEKPSFKKLQNKLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEA
FT                   IGNLHTAARSYAIDMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKS
FT                   PPKATH"
FT   gene            536..1240
FT                   /gene="TGB1"
FT   CDS             536..1240
FT                   /codon_start=1
FT                   /gene="TGB1"
FT                   /product="TGB1"
FT                   /note="movement protein"
FT                   /db_xref="GOA:B9VWI1"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:B9VWI1"
FT                   /protein_id="ACM50750.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLKIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            1221..1592
FT                   /gene="TGB2"
FT   CDS             1221..1592
FT                   /codon_start=1
FT                   /gene="TGB2"
FT                   /product="TGB2"
FT                   /note="movement protein"
FT                   /db_xref="GOA:Q8JJH7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJH7"
FT                   /protein_id="ACM50751.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            1444..1698
FT                   /gene="TGB3"
FT   CDS             1444..1698
FT                   /codon_start=1
FT                   /gene="TGB3"
FT                   /product="TGB3"
FT                   /note="movement protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q3BLG9"
FT                   /protein_id="ACM50752.1"
FT                   /translation="MSSYLSSFSHWVSSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1737..>2447
FT                   /gene="CP"
FT   CDS             1737..>2447
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="CP"
FT                   /note="coat protein"
FT                   /db_xref="GOA:B9VWI4"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:B9VWI4"
FT                   /protein_id="ACM50753.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLATNETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALLRRALAAHFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2447 BP; 732 A; 595 C; 454 G; 666 T; 0 other;
     atgaggttgt ctggtgaagg tccaactttt gatgccaaca cagaatgttc aatagcatat        60
     actgctacaa gataccatct tgattctaca gtcaagcagg tttatgctgg agatgatatg       120
     gcattagatg gagttgtcca agaaaaaccc tcttttaaaa aactacagaa caagcttaaa       180
     ctcacctcaa agacactatt tccaaaacag gttaaaggtg attatgctga attctgcggt       240
     tggactttca ctcctggtgg tatcattaaa aaccctttga aaatgcatgc ttccattatg       300
     ttgcaagagg caatcggcaa tttacacacc gctgccagat cgtatgccat tgacatgaag       360
     cattcatacc aaatgggtga tgagctgcac aattacttaa caccagatga agctgaacaa       420
     cacttccttg ctgttcggaa gttgcacaag ttacaccaag gcgaagcaat gagacttggg       480
     gaaaagagcc ctccaaaagc aacacattga ggggttaagt tttccccagt tcgaaatgga       540
     aagatcaact ctgattaatt tacttcaatt gcaccacttc gagccaaaac tcagtgttga       600
     aggaatcata gttgtgcacg gaattgcagg cactgggaaa accactttac ttaggacttt       660
     attttctgct taccctagct tagttatagg ttcacctagg ccttgctatt tagataaaca       720
     aaataaaatt tcgcaagttt gcttatcttg ctttcccaat acccattgtg atattgtcga       780
     tgagtatcat ttgctagaaa gttttccaga accaaaattg gctatctttg gtgacccctg       840
     tcaatgcaca tacattgaga gacttagagt cccacattac acttccttca gaactcatag       900
     atttggaaag tcaactgctg agattttgaa caaactgttt gaccttaaaa tagtctcagt       960
     taagaaagaa gacgacatcg ttgaattctt taaccctttt gaagttgacc ccactgagca      1020
     tatctctgcc tctgaagaag aagtcttgga ctttgtttct gaccaagtgg tgaccactag      1080
     ctcagaggaa ctagcaggac ttgagtttgc agaaacaact ttctactgca ccacattggc      1140
     cgcagctgtt gctgaaaatc ctgctaagac tttcatctct ctgactagac acacccacaa      1200
     actcaccatt ggggaactaa atgccaggtc taactcctag agctgacctc actgacacat      1260
     acaaaatcat tgccattgct ttcctgttgt cagcttgcat ttacttccaa aatagccact      1320
     accaacctgt tgctggagac aacttgcacc gtttgccttt tggtggccaa tatcaagacg      1380
     gcaccaaaaa gatatcttat tttccacaac agcagtcata ttttcattct ggaaacaaat      1440
     taaatgtcct catacttatc ttcattctca cattgggtat cgtcctcacc aataaattta      1500
     gttttagctt tagtcgtact actcaccagc attcttgcta taacacacat tcagcaacca      1560
     acaatacaca accattgtca ggtcatcatt gacggtgctg caatagtcat aacaaattgt      1620
     gagaacacac cagaagtgct taaagcaatc aacttctccc cttggaacgg gttaagtttt      1680
     cctaaatttg aaaattaata ttgagtgttc acaaaaatca acttcaataa acaatcatgc      1740
     ctgacacaac acctgttgct gccacttcaa gtgcaccacc cacagccaaa gatgctggtg      1800
     ccaaagctcc ttctgacttc tcaaatccca atacagctcc tagtctcagt gatttgaaga      1860
     aagtcaagta tgtctccacc gtgacctccg tggccacacc tgctgaaatt gaagccctag      1920
     gcaaaatctt caccgctatg ggccttgcca ccaatgagac tggtccggcc atgtgggatc      1980
     tagctcgtgc atatgctgac gtgcagagtt ctaaatcggc acagctgatt ggagctaccc      2040
     cttccaaccc tgcactatta cgccgagccc ttgctgctca ttttgatcga atcaatataa      2100
     cccccaggca attttgcatg tactttgcca aagttgtttg gaacatactt ctcgacagca      2160
     acattccacc agcaaattgg gccaaacttg gttaccaaga agatacaaaa tttgctgcat      2220
     ttgacttctt cgatggagtc accaaccctg ccagcctgca gcctgctgat ggtcttatca      2280
     ggcagccaaa tgagaaagaa ctagctgctc actccgtagc taagtacggc gccttggcta      2340
     ggcaaaagat ctccacaggt aattatatta ccacacttgg agaagtcaca cgtggacaca      2400
     tgggaggagc taacaccatg tacgcgatag acgcaccccc tgaactt                    2447
//