ID FJ612601; SV 1; linear; genomic RNA; STD; VRL; 6412 BP. XX AC FJ612601; XX DT 08-FEB-2009 (Rel. 99, Created) DT 13-MAY-2009 (Rel. 100, Last updated, Version 2) XX DE Pepino mosaic virus isolate PepMV-Pa, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6412 RX DOI; 10.1007/s00705-009-0368-y. RX PUBMED; 19333548. RA Hasiow-Jaroszewska B., Borodynko N., Pospieszny H.; RT "Infectious RNA transcripts derived from cloned cDNA of a pepino mosaic RT virus isolate"; RL Arch. Virol. 154(5):853-856(2009). XX RN [2] RP 1-6412 RA Hasiow-Jaroszewska B., Borodynko N., Pospieszny H.; RT "Necrotic type of PepMV"; RL Unpublished. XX RN [3] RP 1-6412 RA Hasiow-Jaroszewska B., Borodynko N., Pospieszny H.; RT ; RL Submitted (09-JAN-2009) to the INSDC. RL Virology and Bacteriology, Institute of Plant Protection, National Research RL Institute, Wegorka 20, Poznan, Poland XX DR MD5; d386d19184245b7572239eb1e5ebb0d0. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6412 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="PepMV-Pa" FT /mol_type="genomic RNA" FT /country="Poland" FT /collection_date="2007" FT /db_xref="taxon:112229" FT 5'UTR 1..85 FT gene 86..4402 FT /gene="RdRp" FT CDS 86..4402 FT /codon_start=1 FT /gene="RdRp" FT /product="RdRp" FT /note="polymerase" FT /db_xref="GOA:B9VWH5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B9VWH5" FT /protein_id="ACM50744.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD FT WLKYSRFFGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVISTHTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKPKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KMQHEDIVKSGGVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK FT LPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLLHHANTELFILTGDSRQSVYH FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPIANGNNLEKLASALPEKFAREIYVKHHGHSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQSIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGGNFNRTAQTNDFTAFD FT QSQDGAMVQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDDNTE FT CSIAYSATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL FT TPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 4428..5132 FT /gene="TGB1" FT CDS 4428..5132 FT /codon_start=1 FT /gene="TGB1" FT /product="TGB1" FT /note="movement protein" FT /db_xref="GOA:B9VWH6" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B9VWH6" FT /protein_id="ACM50745.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIDRLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 5113..5484 FT /gene="TGB2" FT CDS 5113..5484 FT /codon_start=1 FT /gene="TGB2" FT /product="TGB2" FT /note="movement protein" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ACM50746.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 5336..5584 FT /gene="TGB3" FT CDS 5336..5584 FT /codon_start=1 FT /gene="TGB3" FT /product="TGB3" FT /note="movement protein" FT /db_xref="GOA:B9VWH8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B9VWH8" FT /protein_id="ACM50747.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLEAINFSPWNGLSFPQL" FT gene 5630..6343 FT /gene="CP" FT CDS 5630..6343 FT /codon_start=1 FT /gene="CP" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q699Z5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q699Z5" FT /protein_id="ACM50748.1" FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6344..6412 XX SQ Sequence 6412 BP; 2045 A; 1461 C; 1160 G; 1746 T; 0 other; gaaaacaaaa cataacacat aatatcaaaa gtgacctaac acaacataac cacgtggaaa 60 aacagcgaaa gcactttacc acattatgtc tcgtgttaga aacactttag aaaagatcag 120 ggacccacaa gtacaatcta gcatttgcga agccgcttac caacatgtta gacctgtgct 180 caaggaatcc ctaatcaact gtccttatgc gcttaatgac tatgaagcag acacccttga 240 gaatttaggt gtcacaataa acccccatgc aatccaaaca catactcatg cagcagctaa 300 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg acgagaaagt 360 taccttcatt ttcctcaaaa gaagcaaact gagatacatg cgaagagctg ctgtacataa 420 agatgttttt gttaatcaca atatagaacc caaagatttc ttcaggtatg atgaggaatc 480 tacatctact agtttctccg tgaacaccag gatcgcttac atctccgatt ctctacattt 540 catggaacca gctgatgtga cccacctctt tgaccgttgc cacaatctta aaacactgat 600 ggcaactgtc gttttacctg ttgaagccat ccacaaacaa acatctttat ttccagcgat 660 atactccatt aattacaatg aagaaggttt tgagtatatc cctggttctc atggtggagg 720 ggcatacttt cataagtatg aaacattaga ctggctcaaa tactctagat tctttggcca 780 ggacccctta actggactcc gatacaccat aaccattcaa atggtggaga gtttaggagc 840 caaccatctt ttcctcttcc aaagaggaaa ttttgaaaca cctttataca ggacgtttca 900 aaaaaatagc tttgtgacct ttcctaacat cttccatccc caacatgtta atgccacaaa 960 gcccatgcca agatccaggg caattcagct gtatttatat gtcaaatctg tcaataaggt 1020 gacacaaaga gatatctttg cgaaagtaag gcaacttata tctacagctg aacttgaatt 1080 gtatgaccct gatgaactta cacatattgt caattatttc gcatatgtct cagaattaag 1140 ctcaatcaac gactatgaca atatgcttaa atcaagtttt ttcaaaaaac ttgttgcacc 1200 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg atttcaatca 1260 acttttaact gctcttcaat ggaaagactt ctcttacacc attaaaactg aagagttagt 1320 tatttctaca cacactgaaa ttggccaggc aatctgtaaa gctgcgacca catacaaaga 1380 aagaagacaa ttgaccaatt tagtcaaaca aggcgcagta acattagctg atttcaaaga 1440 agcggaccag catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc 1500 ccaccggagc tatgaaaatg ccatcaacaa tcttggcatt gagattaatg aggatgtacc 1560 tgaaagttcc ggcactaatg aaacattgct taacaatgaa atatctttag caatgtcatc 1620 tgctgaacat gtgcaagctg ttcaagaaat tgagtcttta ctctctaacc ccgaagcggc 1680 accaatattg ccccctgcac acgttaaaac atgggctagc cttgcatctg acacttccag 1740 cactaaaaac cgtgaaatcg aagatatagt ggctaagctg gaaatacaaa gaaatgaagc 1800 tagttgcagc taccttcaac caaataagga attgtcaaaa cccaaggctg ctgataacaa 1860 tctcccctgg aatgcttgga tcccattgct taatgcacac ggcttcaaag gagatcaatt 1920 acaatacggc ccagatggta acttgataca gcccatccaa gacattaaca attcacagcc 1980 tagatctgac tatccgtctt ctctgccatg tgaacttgtg gaaactttga ggaaaattaa 2040 gcgtgctgtc tatgccatcc caataagcca caggagggct agtgcttaca gttctgacat 2100 caaaaataac agaactggca aacttctctg caaccaaagc aaagaatgga aagaaagctt 2160 tgctttcaaa atgcaacatg aagacatcgt caaatcaggt ggtgtcatac atggttgcgg 2220 agggtctggc aaatcccagg cattacaaaa cttcttgaga acattgggtg attcaaatga 2280 ttgctgtact gttgtagtac ccactgttga acttagaaat gactgggtaa acaaactcca 2340 taaattgccc atggagcata tcaaaacatt tgagaaagca atgattcaac ctggctttcc 2400 agttgttata tttgatgatt acaccaagtt gccacctggc tacattgaag catacctact 2460 tcaccatgcc aacactgagc ttttcatact tactggtgat tctaggcaaa gcgtgtacca 2520 tgaatctaac aatgaagcgt acattgcctc attagatgaa gctgttgcat actacgctaa 2580 ttactgcggg ttttatttaa atgctactca tagaaatgtc cgtagtttag ccaacaaact 2640 tggtgtttac agtgagaaag aaggacactt gaaaatcact tttgcttcac atgccttaca 2700 aaagtgcaaa gtgccaattt tagttccttc tcaaatgaaa aagagtgcta tgttagacat 2760 tggacataaa tccatgacct atgctggttg ccaaggttta acagcaccca aggtacaaat 2820 tctccttgat aaccacacgc aacattgctc tgacagagtt ctgtacacct gtctgtctcg 2880 tgcagttgat tctatccact tcatcaatac tggtcccaac aattcagaat tttgggataa 2940 gcttgaggca acaccatacc tcaaagcctt cattgatgtc tatagagatg aaaaaactga 3000 aatgctcaat tctaagcctg ctgatgacag tccaactgag cctgaagcac ctgttacaca 3060 tttcccaata gcaaatggaa ataacttaga gaaattagct tctgctttgc ctgaaaaatt 3120 tgctagggag atttatgtca agcatcatgg ccactccaac acaatccaaa ctgagaaccc 3180 tgtggtccaa cttttccaac atcaacaagc gaaagacgag acactctttt gggccacaat 3240 tgaagctaga ttgtccataa caactcctga agcaaacctc agagaatttt tgcttaagaa 3300 agatgttgga gacattctct tcttcaatta ccataatgcg atgtgcttgc ctgccgatcc 3360 tgttgacttt gaagaaaaga cctgggagat ctgtgctgct gaagtgaaaa acacttatct 3420 tgccaaaccc atggccaatc ttatcaatgc cgcaagtaga caatcacccg actttgactc 3480 taataagatc tcattattcc taaagtctca atgggttaaa aaagtggaaa aacttggagc 3540 tatcaaatcg aaacctggtc agtccatagc tgcttttatg caacaaacag tcatgttgta 3600 tggtactatg gccaggtatt taaggaaaat gcggcaaaga ttccagccaa aacacatatt 3660 catcaattgt gaaaccacaa ccgatgatct caataaattt gtcaaagatg gcgggaactt 3720 taacagaacc gcccaaacaa atgacttcac tgcttttgat cagtcgcaag atggagcaat 3780 ggttcaattt gaagtcatga aagcaaaatt ttttaacatt ccagctgatg tcattgaagg 3840 ctacatcaac atcaagttga atgctaaaat tttccttgga acactctcaa taatgagact 3900 ttctggtgaa ggtcccacat ttgatgataa cactgagtgt tcgattgcat acagtgccac 3960 aagattccat attgacaaca ctgttaagca agtgtatgcc ggtgacgaca tggcattaga 4020 tggagttgtg agtgaaaaga aatcattcag gaagttacaa aatctactaa aactcacttc 4080 aaaaacgctg tacccaaaac aggttaaagg ggattacgct gaattttgtg gttggacttt 4140 cacaccaggg ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga 4200 agccattggc aatctgcaca cagcagccag atcttatgca attgacatga agcattcata 4260 ccaaatgggt gaccaactgc atgactacct aacccccgat gaagctgaac aacatttcct 4320 agctgtgaga aagcttcaca aactccatca aggcgaggcc atgcgtcttg gggagaaaag 4380 tccaccaaga tcaacccatt aaggggttaa gttttcccca gtttgaaatg gaaagatcaa 4440 ctttgatcaa tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca 4500 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact ttattttctg 4560 cataccctag cttagttata ggttcaccta ggccttgtta cttagataaa gctaataaaa 4620 tttcacaagt ttgcctttct tgttttccaa ataccttgtg tgacattgtt gacgagtacc 4680 atctcttaga aagttttcct gaaccaaaac tagccatttt tggtgacccc tgtcagtgca 4740 cttacattga taggttgaga acacccaact acacatcctt cagaacacac cgatttggca 4800 aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca gtcaaagcac 4860 aagacgacac agtagaatac tttgatcctt tcgcagtgga cccctccgaa cacatttctg 4920 cttcagaaaa agaagttttg gaatttgtag gtgatcaagt tgagactaca agctctgaag 4980 aactagctgg tctcgagttt agtgaagtta ctttctactg taccacactt gctggtgctg 5040 ttcaagaaaa tcctgccaaa accttcattt cactcactag acacacttca aagctcacaa 5100 ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac gtataaaatc 5160 attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca 5220 gttgcaggtg ataatttgca cagactaccc tttggtggtc agtatcaaga cggaactaag 5280 aagatttctt actttccgca acaacaatcc tactttcact caggaaacaa gcttaatgtc 5340 ctcatactta tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc 5400 attagccgta atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt 5460 caatcagtgc caggtcatca ttgacggtgc agccatagtt ataacaaatt gtccaaacac 5520 acccgaagtt cttgaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt 5580 gtgaaattat atttgttatc tagttaaatt caaacaattt aactcaacta tggaaaacca 5640 acctacagct tctaacccat cagatgcacc accaactgct gctcaagctg gtgcccagag 5700 cccagccgac ttctcaaatc ctaatacagc tccttcccta agtgatttga agaagatcaa 5760 atacgtgtca actgtcactt cagttgccac gcctgctgaa attgaggccc ttggcaagat 5820 ctttactgcc atgggtttag cagccaatga gaccggacct gccatgtggg acctcgctcg 5880 tgcttatgct gatgtgcaaa gttcaaaatc tgcacaactt ataggtgcca caccatccaa 5940 ccctgctttg tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag 6000 acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca gcaatgtgcc 6060 acctgccaac tgggcaaaat tgggctatca ggaagatacc aagtttgctg cttttgactt 6120 ctttgatgga gtcacaaatc cagctagtct acagcctgca gatggcctaa tcaggcagcc 6180 caatgaaaaa gagcttgctg ctcactcggt tgctaaatat ggcgcccttg cccgccagaa 6240 aatatccact ggtaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg 6300 cgccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactcg aaacttaacc 6360 agagtggggt tttctatagt ttattttccc ttagtatcta aatctactaa at 6412 //