ID FJ611959; SV 1; linear; genomic RNA; STD; VRL; 6290 BP. XX AC FJ611959; XX DT 05-FEB-2010 (Rel. 103, Created) DT 05-FEB-2010 (Rel. 103, Last updated, Version 1) XX DE Fig mild mottle-associated virus isolate Cal1 RNA-dependent RNA polymerase DE (RdRp) gene, partial cds; p25, p6, putative heat shock protein 70, putative DE heat shock protein 90, and putative minor coat protein genes, complete cds; DE and putative coat protein gene, partial cds. XX KW . XX OS Fig mild mottle-associated virus OC Viruses; Riboviria; Closteroviridae; Closterovirus; OC unclassified Closterovirus. XX RN [1] RP 1-6290 RA Elbeaino T., Heinoun K., Digiaro M., Martelli G.P.; RT "Fig mild mottle-associated virus, a novel closterovirus infecting fig RT tree"; RL Unpublished. XX RN [2] RP 1-6290 RA Elbeaino T., Heinoun K., Digiaro M., Martelli G.P.; RT ; RL Submitted (08-JAN-2009) to the INSDC. RL IPM, Istituto Agronomico Mediterraneo di Bari, Via Ceglie 9, Valenzano, BA RL 70010, Italy XX DR MD5; 5f35b7853ee541b9a628a6d9907660f2. XX FH Key Location/Qualifiers FH FT source 1..6290 FT /organism="Fig mild mottle-associated virus" FT /host="Ficus carica cultivar Dottato bianco" FT /isolate="Cal1" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="17-Aug-2008" FT /db_xref="taxon:666641" FT gene <1..783 FT /gene="RdRp" FT CDS <1..783 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:D3GBA9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D3GBA9" FT /protein_id="ACU57190.1" FT /translation="ANTWIGNTLVTLGLLAMYYDTSQFPLLLVSGDDSLIYSNEPIKNF FT SSEICLETGFECKFMSPSVPYFCSKFVVQTGTKTCFVPDPYKLMVKMGAPSKFLTNKEM FT FEVYTSFRDLTVDFGDQVVMEKLALLVHKKYDFESGTTLPALCSIHCLRSNFSQFANLY FT PRYRGYSYLDEAALRLASRIPDFVVSRLKSASGYAYFGYILDSEQDLPEGYSYVHSAMF FT KKKSSLSRTTREFFKGIPRADKNSILKVLKKNTSRMDF" FT CDS 940..1605 FT /codon_start=1 FT /product="p25" FT /note="25 kDa protein" FT /db_xref="GOA:D3GBB0" FT /db_xref="UniProtKB/TrEMBL:D3GBB0" FT /protein_id="ACU57191.1" FT /translation="MASSIASEVTVPSRAGTHYFLEYLWDVSLDNLPSGTLRLESLYPG FT VAVLFSICFSDGDLRSWVVRRSFFSEALSIKQLHPSHGDANSSFPLDSSLPFSFQSDER FT VCFRVCGRELISFESEHFTFIVHLVKRTASEFPLQDAMTVMLVPPMTVRDGTEYLSEEA FT YCVSTPSTVLGGERHSLLDLRERNDVFARKCIFASKLLLSLLLTLTLLSAILFFVLTI" FT CDS 1610..1780 FT /codon_start=1 FT /product="p6" FT /note="6 kDa protein" FT /db_xref="GOA:D3GBB1" FT /db_xref="InterPro:IPR009584" FT /db_xref="UniProtKB/TrEMBL:D3GBB1" FT /protein_id="ACU57192.1" FT /translation="MDCVIQGYLTLLMGCFVFLFKAFIAYVLISFRHLVGLPKPSATSH FT PDYPPPGSGVR" FT CDS 1793..3559 FT /codon_start=1 FT /product="putative heat shock protein 70" FT /note="HSP70; 63 kDa protein" FT /db_xref="GOA:D3GBB2" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:D3GBB2" FT /protein_id="ACU57193.1" FT /translation="MATFGLDFGTTFSTVSVVTSSGYLFFQQNDSAYIPTSLFFFPSGG FT VCFGYQADKNFISKADGSYFRDLKRYVGCTSRTIGNYLTKLRPHYRVTPVKVGYGVSDT FT VSLSAYNEAGADTFDLPFLIATYVSRLIETAEEAFRCKCSSLIVSVPAGYSCSKRLFME FT ACVSLSGYQCRAMLNEPSAAAIAALPHLSPTDSLLLVYDFGGGTFDVSLATVVGSTIAI FT KDSSGDMNLGGRDIDRALSDWIKSRAGVITPEPLDVSALKEALSISSETLTYTLDVAGN FT PQVRISPSDLAEIARPFIDRSIAVVLKLLKSSKFRSLKPKVVLVGGSSALPGLSQLITQ FT MPSFSGVVEVPDARGAVSAGCALFVRSFDATSDMHLVDCVTVSVSVCSLRGMAVCIVPK FT GSPLPFVGSKSITLENLTRSAPIIFKFFEGESTRVVYNDPLFAFEFYLKDWGLDAWSIS FT SLKVTIHTEVSSVGEVSLRLSAANSSLDMKPSKLYDFPTPSKPIPHIVNDNREKLDSIK FT NFIALASNPQARNNNKALLSDTSVLSSTPSHVFIDTAAAGPSEFDAAELVLRQTVPRNV FT RSSTVRRVPFGG" FT CDS 3435..5117 FT /codon_start=1 FT /product="putative heat shock protein 90" FT /note="HSP90; 64 kDa protein" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:D3GBB3" FT /protein_id="ACU57194.1" FT /translation="MSLSTQQLQDQASLTPQNWYYGKLFREMLGPRRYAECLLEAESYA FT PFRVSCNLVEARDYLRPHEVEPYQKYSAKGFINEWALLSEYLRIHNWPEITGLSLYTIM FT YRIGLFVGPASDVMDLDPQQDCCKYTMSTVAAFLPPSSSELRRYHSWALSNSIGSLTDS FT TKLAEFKLNSENFEETVEVELPEPTMSDYLYNCLVLCETECVISPSRFLIRKTLFDICV FT EYFLDSDLGMSSETSYPILTGVILEIMSSQDMFPSSYVTNVKNASYLVREFRLILDAIM FT QVHYPTPEPDLRVLVPITPVEFMFDLPVYSLYDGVVIMAHGIRRLDRVISDSTFAELFY FT VIQSVMIKNNSGVDEQMLWVAFVLYYAVYRTAKERVQPRPPSFEARMSNGSPSTLVNFV FT EVERLFSDLQVKNPTINVRRQFNGKLGPLALNILRSVRPTLTNIAGIILPAKYGYLAID FT YYKHVPKSALNEEEASILAQLDRIVDLILGSKLSTISLDKKNSRRKRNPKSRINNYRSR FT ELSAFDDSRFKSATDKLFLKDARSLGSWPQGQTLNQLRTLQLH" FT CDS 5066..5767 FT /codon_start=1 FT /product="putative minor coat protein" FT /note="CPm; 26 kDa protein" FT /db_xref="GOA:D3GBB4" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D3GBB4" FT /protein_id="ACU57195.1" FT /translation="MASGTDAQSTSNSSTSLVSAPSNALSSKLVPIENTLQSLNSVLDR FT LDISSISQTRPDKYTEEEMRHYLDEIKNHMITVYKIDEKDYMIHLTMIIVRLAVVSTSD FT KRSYSPHDHIKYVVGGTSYKLYDNAIIPYLKNLMHDPDVRNPLRKFCSTAESLLVSIAA FT IRPDLFETHRATRSGTPMHKGWLSADFVTGSSPLYSELDRSMLLRSREVNLSRTSRDRS FT GVLVSLLDLGN" FT CDS 5941..>6290 FT /codon_start=1 FT /product="putative coat protein" FT /note="CP" FT /db_xref="GOA:D3GBB5" FT /db_xref="UniProtKB/TrEMBL:D3GBB5" FT /protein_id="ACU57196.1" FT /translation="MADPNANKSTAAAPPASGVSPPPTPVPDPAIGSSSTTPPVKMEIE FT TVRVDDNRKMTSREALESHIYMMRELKPHLPQSLQTVEAYSAILGPLTHFFRLRTTSPK FT AESLHSGVPTTF" XX SQ Sequence 6290 BP; 1548 A; 1442 C; 1407 G; 1893 T; 0 other; gcgaacacat ggattggtaa cactttagtt actttgggac tgctcgcaat gtattacgat 60 actagccaat tccctctttt gttggtgtcc ggggacgatt cgctgatata ttcgaacgaa 120 cctattaaaa atttttcgag tgagatatgc ttagaaaccg ggttcgaatg taaatttatg 180 tcgcctagcg tgccctactt ctgttctaag tttgtggtcc agacagggac gaagacttgc 240 ttcgtaccag atccttataa gttgatggtg aagatgggag cgcccagcaa atttttgacg 300 aataaggaga tgttcgaagt ctacacttct tttcgtgatt tgactgtcga ttttggggac 360 caagtggtca tggaaaaact ggctcttctc gttcacaaga agtatgattt tgaatcaggg 420 acgactctcc ctgctttatg cagcatacat tgtcttcgtt cgaacttctc tcagttcgcc 480 aatctatacc cgagataccg agggtattct tatttggatg aagcagcgtt gcggttagct 540 tctcgtattc cggactttgt ggtttctcgt ctcaagagtg cttctgggta cgcgtacttc 600 ggatacattc tcgattcgga gcaggacttg ccagagggtt attcctacgt acattcggct 660 atgttcaaga agaagagttc gctgtcaaga acaactagag aattctttaa gggcatccct 720 cgagctgata agaacagtat tcttaaagtt ctcaagaaaa acacctctcg gatggatttt 780 taggaagtaa tatcttttcg atcgccggtg cgcgcgcgcg attagtagag gttatttaga 840 acgagacata attttctcat cactgaaatg gcgtgaacgc agttgaaatt atatgttata 900 cgtgattgga taaggtagta tcgttttatt attattatta tggcctcttc tattgcttca 960 gaggttaccg ttccatcgcg tgccgggacg cattactttc tcgagtatct ttgggatgtc 1020 tcattagaca atctaccgtc cggcacgcta cgacttgagt ctttgtatcc cggtgttgca 1080 gttcttttct caatttgttt ttctgatggg gatctccgtt cctgggtcgt gcgtcggtct 1140 ttcttttcgg aagcgttgtc catcaagcaa cttcatcctt cgcacggcga tgcgaattct 1200 tcttttcctt tagattcttc gctccctttc tcttttcaga gcgatgagag agtgtgcttc 1260 cgtgtgtgtg gtcgtgagtt gatttcattt gaatctgaac atttcacttt cattgtgcat 1320 ttggttaagc gcaccgcttc tgaatttcct ctgcaggacg cgatgacagt tatgctggta 1380 ccacctatga ctgttcgcga tggtactgaa tatctttctg aggaggctta ttgcgtgtct 1440 actccttcca ctgtcttagg tggagagcga cactctttac ttgatctacg cgagcgtaac 1500 gacgtttttg ctcggaagtg tatatttgct tcaaaacttt tactctcact ccttctgacc 1560 ttgacgttgt tgtctgccat acttttcttc gtcctcacaa tttgacgaaa tggattgcgt 1620 catacaaggt tatctgactt tactgatggg ctgttttgtg tttctgttta aagctttcat 1680 agcttatgtg ttgatatcat tccgtcactt agtaggtctg ccaaaaccat ccgcgacttc 1740 tcatcccgat taccctcccc ctgggagtgg tgttaggtaa attgtttgat ttatggctac 1800 tttcggattg gatttcggga ccacattctc tactgtgtcc gttgtcacgt cgtctggtta 1860 tttatttttt caacagaacg attctgcgta cataccgacg tctttgtttt tctttccttc 1920 tggtggtgta tgcttcggct accaagccga taaaaatttc atctcgaaag cagacggttc 1980 ttattttcga gatctcaagc ggtacgtagg ctgcacgtct aggaccatag gaaattactt 2040 gacgaagttg cgtccgcatt atagagtcac tcccgtcaaa gtggggtatg gggtgtcgga 2100 caccgtgtcc ttatcagctt ataatgaagc cggtgctgac acgttcgatc ttccgttcct 2160 catcgcgact tacgtgtcga gattaattga aacggcggag gaagcttttc gatgtaagtg 2220 ttcgtcgttg atcgtctcgg ttcccgcggg gtatagttgc tctaagcgac tattcatgga 2280 agcttgtgtt tccctatcgg gataccagtg tcgagcgatg ctaaatgaac cttcggcagc 2340 ggctattgca gctctacctc atctttctcc caccgattcc ttactattag tgtacgactt 2400 cggagggggt actttcgacg tatctttagc gacagttgtc ggctctacca tagccataaa 2460 agactctagt ggagatatga atctaggtgg acgcgacatt gatcgcgctc tttcggactg 2520 gatcaaatcg cgggctggcg ttatcacacc ggagcccctt gatgtttcag ctttgaagga 2580 agctttatcg atatcctcgg aaacgctgac ttacactttg gatgttgcgg ggaaccctca 2640 agtcagaata tctccttccg atttggccga gatcgctcgt ccttttatag acaggagcat 2700 cgctgtagtg ttgaaactgt tgaaatctag taaattcaga tctctaaagc ctaaagtagt 2760 cttagttggc ggctctagcg cactccctgg tttgtcgcag ttgatcactc aaatgccgtc 2820 cttctcggga gtggtagaag ttccggacgc tagaggtgct gtcagcgcgg gatgcgcgtt 2880 gttcgtgcgt tctttcgacg ccacctccga catgcaccta gtagattgtg tcacggtctc 2940 tgtatcggtg tgctccttgc gaggaatggc cgtctgtata gtaccaaaag gctcaccgtt 3000 gccgttcgtg ggatcgaaga gcattacgtt ggagaacctc actagatccg caccaatcat 3060 atttaagttc ttcgaagggg aatctacaag ggtcgtgtat aacgaccctc tattcgcttt 3120 cgaattttac cttaaagact ggggtctcga tgcttggtcg atatcgtctc ttaaagtgac 3180 aatccatacg gaagtttcgt cagttgggga agtatctctc agattgtctg cagccaattc 3240 gtcgttagac atgaagccta gcaagctgta tgattttccg actccttcga aaccaatacc 3300 tcacattgtc aatgacaaca gggagaagct tgattctatt aaaaatttta ttgccttagc 3360 tagcaatcct caagcgcgta ataataacaa agctctttta tcggacactt ccgtattatc 3420 ttctactccc agtcatgtct ttatcgacac agcagctgca ggaccaagcg agtttgacgc 3480 cgcagaattg gtattacggc aaactgttcc gcgaaatgtt aggtcctcga cggtacgcag 3540 agtgcctttt ggaggctgaa agctatgctc cctttagagt ttcttgtaat ctagtggaag 3600 ctagagacta cctaagacct catgaagtgg aaccttatca gaaatattcc gcgaaagggt 3660 tcataaacga atgggccttg ctaagtgaat atctgcgtat ccacaactgg cctgagatca 3720 ccggtttgtc tttatacacg attatgtatc gcataggtct attcgtagga cctgcatctg 3780 acgtgatgga tctggatcca caacaagatt gctgcaagta cacgatgtcc accgtcgctg 3840 ctttccttcc gccttcaagc tctgaattgc ggagatacca ctcgtgggca ttgtctaatt 3900 ctatagggtc tttaacagac tctactaaat tggctgagtt taagctcaat agcgagaatt 3960 ttgaagagac cgtagaggtc gaacttccgg aacccaccat gtctgattac ctatacaact 4020 gtctggtgct gtgtgagact gaatgtgtga tttcgccatc tcgttttctg atccgcaaaa 4080 ctctattcga catatgcgtc gaatatttct tggacagtga cttgggtatg tcttcggaaa 4140 cctcctaccc catactcacg ggggtgattc tggagatcat gtcatctcaa gacatgttcc 4200 cctcgagtta cgtcactaac gtgaagaatg caagttattt agtgcgtgaa tttaggctca 4260 ttttggacgc gattatgcaa gtacattacc caactcccga gccggattta cgtgtactcg 4320 taccaataac tcctgtggag ttcatgttcg atctacctgt atacagttta tacgacgggg 4380 tagtgatcat ggcccatggt attaggcgtc tggatcgcgt tatatcggac tcgactttcg 4440 ccgaactatt ctatgtaata caatccgtta tgataaagaa caactccggg gtggatgaac 4500 agatgctttg ggtagcgttc gttctctatt atgccgtgta tcgcactgct aaagagagag 4560 tgcaacccag acctccatct ttcgaggctc ggatgtcgaa cggttctcct tctactctag 4620 tgaatttcgt ggaggtagaa cgcttattca gcgatcttca agtgaagaat cccaccataa 4680 acgtgagacg tcaatttaat gggaaattgg ggccattagc cttgaacata ttgagatcgg 4740 ttagacctac cttaaccaac atcgctggta taatactccc cgccaaatat ggttatctgg 4800 cgatcgatta ttataagcac gttcctaaat ctgctctaaa tgaggaggag gcatctatct 4860 tagctcagct agatagaatt gtcgatctca ttctcggatc aaaattatca accatatctt 4920 tggacaagaa aaattctcgc cgtaaacgga acccgaaatc tagaatcaat aattaccgtt 4980 cgagggaact atctgctttc gacgactcgc gattcaaatc cgctacagat aaactattct 5040 taaaggacgc tcgaagttta ggatcatggc ctcagggaca gacgctcaat caacttcgaa 5100 ctcttcaact tcattagtgt cagcgccttc aaatgcgctt tcatccaaac ttgtacccat 5160 agagaacact cttcaatcct taaattccgt gctcgatagg ttagacatat ccagcatatc 5220 acaaacgaga ccggataaat atacggaaga agaaatgaga cactatctcg acgaaatcaa 5280 gaaccatatg attacggtct acaaaatcga cgagaaagat tacatgattc acttaaccat 5340 gataatcgtg aggctggcag tcgtttcgac cagcgataaa aggagttatt ccccacacga 5400 tcatatcaaa tatgtggtcg gtgggacttc gtataaactg tacgacaacg ccattatacc 5460 ataccttaaa aacttaatgc acgatcctga cgttcgcaac cctctgcgta agttctgctc 5520 taccgctgaa tctctgttag tttccatagc ggccatacgt ccagatttat tcgaaacgca 5580 tagagccacg aggagcggta ctcccatgca taagggttgg ttgagtgccg atttcgtgac 5640 gggatcttct ccattatact ccgaactgga tagatcgatg ctattacggt cgcgagaagt 5700 gaacttgagc aggacatctc gagatagatc aggggtgtta gtgagtttat tagacttggg 5760 caattgattc gcgttgtcga tcatcgtctg gagattacat cttttgaagc ctacgctctg 5820 cgtcggtttc cttccaataa attcatttcg aacgcgaagt atcaatacaa ttgacaaaaa 5880 tcattctcct atactaggtt gaagcgcttt tatatacttt agtacacgca catcattata 5940 atggccgacc ctaatgctaa caaaagcact gcagcggctc ctcccgcttc cggagtttct 6000 cctcctccta ctcctgtgcc agaccctgcg atagggtctt cttccacgac ccctccggtt 6060 aagatggaga tcgaaacagt gagagtggac gataatagaa agatgacctc tcgagaggcg 6120 ctcgaatctc atatatacat gatgcgagaa ttgaaacctc atttacctca gtcgctacaa 6180 acggttgagg cgtactcggc tatactgggc cctctaacac acttcttcag gcttcgtacg 6240 acatctccta aagcagaatc attgcactct ggagtaccca ctactttcaa 6290 //