ID FJ608550; SV 1; linear; viral cRNA; STD; VRL; 3694 BP. XX AC FJ608550; XX DT 22-SEP-2010 (Rel. 106, Created) DT 22-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Rio Mamore virus strain HTN-007 segment M, complete sequence. XX KW . XX OS Rio Mamore hantavirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus; OC unclassified Orthohantavirus. XX RN [1] RP 1-3694 RX DOI; 10.1089/vbz.2009.0115. RX PUBMED; 20687859. RA Richter M.H., Hanson J.D., Cajimat M.N., Milazzo M.L., Fulhorst C.F.; RT "Geographical range of Rio Mamore virus (family Bunyaviridae, genus RT Hantavirus) in association with the small-eared pygmy rice rat RT (Oligoryzomys microtis)"; RL Vector Borne Zoonotic Dis. 10(6):613-620(2010). XX RN [2] RP 1-3694 RA Richter M.H., Fulhorst C.F.; RT ; RL Submitted (06-JAN-2009) to the INSDC. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX DR MD5; 2b6719cbe56f6421ad8fe8834e7789a7. DR EuropePMC; PMC2979329; 20687859. DR EuropePMC; PMC3309664; 22469569. DR EuropePMC; PMC3901500; 24447689. DR EuropePMC; PMC5649414; 28714801. XX FH Key Location/Qualifiers FH FT source 1..3694 FT /organism="Rio Mamore hantavirus" FT /segment="M" FT /host="Oligoryzomys microtis (small-eared pygmy rice rat)" FT /strain="HTN-007" FT /mol_type="viral cRNA" FT /country="Peru" FT /isolation_source="lung cell lysate" FT /collection_date="Apr-1996" FT /note="PCR_primers=fwd_name: HTM91, rev_name: HTM101" FT /db_xref="taxon:46920" FT misc_feature 1..51 FT /note="5' noncoding region" FT primer_bind 1..26 FT CDS 52..3468 FT /codon_start=1 FT /product="glycoprotein precursor" FT /db_xref="GOA:E1U689" FT /db_xref="InterPro:IPR002532" FT /db_xref="InterPro:IPR002534" FT /db_xref="InterPro:IPR012316" FT /db_xref="InterPro:IPR016402" FT /db_xref="UniProtKB/TrEMBL:E1U689" FT /protein_id="ACU46022.1" FT /translation="MEGWLLAILGVYSTLTSVLPKTIYELKMECPHTVGLGQGYIMGSV FT ELGLLDIGKVPDIKIESSCNFDLHTTASNQKSFTQVEWRKKSETTDTTEAAATTFEAQT FT KTANLRGTCVLAPDLYDTLKRIKKTVLCYDLICNQTQCQPTVYLIAPVITCMTIRSCMA FT NLLTSRIQITYEKTHCVTGQLVEGQCFNPSHSLTLSQPAHTYDVVTLSVTCFFTAKKAD FT QYKIVKTLEGIISKTGCTDNAIQGYYVCFLGTHSEPLIVPNLEDIRSAEVVSRMIVHPR FT GEDHDPLQNAQGVLRIVGPVTAKVPSTSSADTLQGVAFAGVPMYSSLSTLVRNVDPEYV FT FSPGIIPESNQSNCDKKTIPLTWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENG FT IFNISSPTCLVNKVQRFRGSEQKVNFMCQRVDNNVVVYCNGQKKVILTKTLVIGQCIYT FT FTSLFSLMPDVAHSLAVELCVPGLHGWATIALLSTFCFGWLLIPAITLIVLKILKVMTY FT SCSHYTTESKFKLILEKVKVEYQKTMGSMVCDICHHECETAKELESHKQSCAEGQCPYC FT MTITEATQSALQAHFTICKLTGRFQEALKKSLKKPEVHRGCYRTLGVFRYRSRCYVGLV FT WGFLLTIELILWAASAETPLLESGWSDTAHGIGEIPLKTDLELDFSLPSSSSYSYRRKL FT TNPANKEESVPFHFQMEKQVIHAEIQVLGHWMDATFNIKTAFHCYGACKKYSYPWQTAK FT CFYEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSIGKAYKVISLKYTRKVCIQL FT GTEQVCKHIDANDCLVTPSVKVCIIGTVSKLQPSDTLLFLGPLEQGGLILKQWCTTSCA FT FGDPGDIMSTTSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYQRLMATKDSFQSFN FT LTDPHITTNRLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQSIEGAWGSGV FT GFTLTCVVSLTECPSFITSIKACDLAMCYGSTVATLARGSNTVKIVGKGGHSGSAFKCC FT HDSDCSSEGLVASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGN FT WIVVVVLVIILFISIILFSFLCPRRSHKKTV" FT misc_feature 3469..3694 FT /note="3' noncoding region" FT primer_bind complement(3649..3694) XX SQ Sequence 3694 BP; 1136 A; 686 C; 789 G; 1083 T; 0 other; tagtagtaga ctccgcaaga agaagcaaaa aatcagtaaa gtgaatttaa aatggaaggg 60 tggttgttgg ccatcctagg agtctactct actctgactt ctgtcctgcc taaaacaatt 120 tatgagttga agatggaatg cccgcataca gttggtttgg ggcaaggcta tattatgggt 180 tcagttgagt tgggtctatt agacattggg aaggtcccag acattaaaat tgagagctct 240 tgcaacttcg atctccatac cactgcatca aaccaaaaga gcttcacgca agttgaatgg 300 aggaaaaaaa gcgaaacaac tgacactaca gaggctgctg ccacaacatt tgaggcacag 360 acaaaaacag caaatctaag agggacatgt gtgcttgctc ctgaccttta tgacactcta 420 aagagaatta agaaaacagt tttatgttat gacttaatct gcaaccaaac acaatgtcag 480 cctactgtct atctcattgc ccctgtgatt acatgcatga caataaggag ctgcatggca 540 aacttgctaa ctagtcggat acaaatcaca tatgaaaaga ctcattgtgt tacaggtcag 600 ttagtggaag gacaatgttt taatccatca cactctttaa ctctgtccca acctgcacat 660 acatatgacg tagtaacact gtcagtaaca tgtttcttta ctgcaaaaaa ggctgaccag 720 tacaagattg taaaaacact agagggaatt atcagcaaaa caggttgtac tgataatgcc 780 attcagggtt attatgtctg ttttctagga actcactcag agcccttgat agtccctaat 840 ctggaggata tacgctctgc agaagttgtt agccgtatga ttgtccatcc gcgaggtgag 900 gaccatgatc cacttcagaa tgcccaaggt gtattaagaa ttgtaggtcc agtgacagct 960 aaggttccta gtacaagttc tgcagatacc ctacagggtg tagcttttgc tggtgtccct 1020 atgtacagtt cattgtccac tctggttaga aatgttgatc ctgagtatgt attctcacca 1080 gggatcatcc cagaatcaaa tcaaagtaat tgtgataaga aaacaatccc cttaacatgg 1140 actgggtatt tgccaatatc aggagaaatg gaaaaagtta cagggtgtac tgtcttttgt 1200 actctggctg gccctggagc aagctgcgag gcttattcag aaaatggtat attcaatatt 1260 agttcaccta catgtcttgt aaataaggtg cagaggtttc gtgggtcaga acagaaggtt 1320 aatttcatgt gtcagcgtgt tgacaacaat gtggtagtat actgtaacgg gcaaaagaaa 1380 gtgatactaa caaagacatt agttattggg cagtgtatct atacattcac aagtctattt 1440 tctctgatgc ctgatgttgc tcattcactt gcagttgaat tatgtgtccc tggattgcac 1500 gggtgggcca caattgcatt gctgtcaaca ttctgttttg gctggctcct cattccggca 1560 attactttga tagtgcttaa aatcttaaaa gtgatgacat attcatgttc acattatact 1620 acagaatcaa aattcaagct gattctggag aaagttaagg ttgaatatca gaaaacaatg 1680 ggttcaatgg tctgtgatat ttgtcatcat gaatgtgaaa cagcaaaaga acttgagtca 1740 cacaaacaga gttgtgcaga agggcaatgc ccttattgca tgactataac agaagccaca 1800 cagagtgcac tgcaggccca ttttacaatc tgtaagctaa caggtaggtt tcaggaggca 1860 ttaaaaaaat ctttaaaaaa gccagaagtg catcgaggat gttaccgtac acttggagtg 1920 ttccggtata ggagcagatg ctatgtgggg ctagtatggg gatttctatt gacaattgag 1980 ttaatattat gggcagcaag tgcagaaaca cctcttttag aatcaggatg gtctgataca 2040 gcacatggta taggtgagat tcccttgaag accgacttgg aacttgattt ttcattgcca 2100 tcttcatcat cttacagcta tcgaagaaaa ttgaccaatc ctgccaataa ggaggaatca 2160 gtcccttttc atttccaaat ggagaaacaa gttattcatg ctgagataca agtattggga 2220 cattggatgg atgcaacatt taatattaaa actgcatttc actgctatgg ggcttgtaag 2280 aagtattcat atccctggca aactgcaaag tgcttttacg aaaaggacta ccagtacgag 2340 acaggttggg gttgtaaccc aggcgattgt cctggtgttg gaactggatg tactgcatgc 2400 ggggtatatc ttgataaact aaaatccatt gggaaggcat ataaggtaat ctctttaaag 2460 tatacaagga aagtctgcat ccaattagga actgagcagg tctgtaagca tatagatgca 2520 aatgattgtt tggttacacc atcagtaaaa gtgtgtatta taggcacagt atctaaactt 2580 cagccttctg acacactctt gttcttaggc cctttagaac aaggtggctt gatcctgaaa 2640 caatggtgta caacatcttg tgcatttggt gatccagggg acattatgtc cactacttca 2700 ggaatgaggt gtcctgaaca tactggttca tttagaaaaa tctgtgggtt tgcaacaact 2760 ccggtatgtg agtatcaagg taatactatt tctggatatc agagattaat ggcaacaaag 2820 gattcttttc agtcatttaa tttaacagac ccccacataa ctacaaatag actagagtgg 2880 attgatcctg acggaaatac aagagatcat gtgaaccttg tgctgaatag agatgtgtca 2940 ttccaagatt taagtgataa cccatgtaaa gtagatctac acacacaatc catagaaggt 3000 gcttggggtt caggggttgg ttttacattg acttgtgttg taagcctaac agaatgccca 3060 agcttcatta catctattaa agcttgtgac ctcgcaatgt gctatggatc aactgtagca 3120 acactggccc gtgggtccaa tacagtcaag attgtaggta aggggggaca ttcgggttct 3180 gcatttaaat gctgtcatga ctctgactgc tcatcagaag ggttggtagc atctgctcca 3240 cacctagaaa gggtgactgg gttcaatcaa atagattctg ataaagtcta tgatgatggg 3300 gcacctccat gcacgtttaa gtgttggttc actaagtctg gtgaatggct cttagggatt 3360 ctcaatggca attggatcgt agttgtagtt ctagttatta ttctctttat ctctatcata 3420 ttatttagct tcttatgccc tagacgtagc cataagaaaa ctgtctgagt atataagtga 3480 ataaatatat gtccatatca atatatcatg tttatttttt atacatataa ccgtgtatta 3540 actttaacat aagatgcttg tataaactaa tgtctgactt actaacatca cctatattac 3600 agatcatatt ttagtcaaaa aaaacaaaac cttcactctc ataaaattct atatcctttt 3660 accgaggctt ttgttcctgc ggagcatact acta 3694 //