ID   FJ602700; SV 1; linear; genomic RNA; STD; VRL; 2157 BP.
XX
AC   FJ602700;
XX
DT   02-JUL-2010 (Rel. 105, Created)
DT   05-AUG-2023 (Rel. 144, Last updated, Version 2)
XX
DE   Rice stripe virus isolate YG-JN segment RNA4, complete sequence.
XX
KW   .
XX
OS   Tenuivirus oryzaclavatae
OC   Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC   Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus.
XX
RN   [1]
RP   1-2157
RA   Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT   "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT   isolates in Korea and their phylogenetic relationships with Japan and China
RT   isolates";
RL   Plant Pathol. J. 25(2):142-150(2009).
XX
RN   [2]
RP   1-2157
RA   Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT   ;
RL   Submitted (01-JAN-2009) to the INSDC.
RL   Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL   Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
XX
DR   MD5; d972a7beb6edd99b44c35826401fdb9a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2157
FT                   /organism="Tenuivirus oryzaclavatae"
FT                   /segment="RNA4"
FT                   /isolate="YG-JN"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:3052763"
FT   CDS             55..591
FT                   /codon_start=1
FT                   /product="putative SP"
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/TrEMBL:D8L280"
FT                   /protein_id="ACR57052.1"
FT                   /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPKTVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNKMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1246..2106)
FT                   /codon_start=1
FT                   /product="NSvc4"
FT                   /db_xref="GOA:Q52R52"
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/TrEMBL:Q52R52"
FT                   /protein_id="ACR57053.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT                   VSVIM"
XX
SQ   Sequence 2157 BP; 693 A; 446 C; 404 G; 614 T; 0 other;
     acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc gaagatgcaa        60
     gacgtacaaa ggacaataga agtttctgtt ggtcctattg taggcctaga ttacactcta       120
     ttgtatgaca ctctgcccaa gactgttagc gataacatta ctctacctga tttgaaagat       180
     ccagagagag tcacggaaga tactaagaag ctaatactca aaggctgtgt ttatatagca       240
     tatcatcacc ccttggaaac tgacaccctt ttcatcaaag tccacaaaca tataccagag       300
     ttttgtcact cattcctatc acacctctta ggaggtgaag atgatgacaa tgctcttata       360
     gacattggtc tgtttttcaa catgttgcaa ccctctttgg gcggttggat aaccaagaat       420
     tttcttagac accctaataa gatgtctaag gaccaaatta aaatgctcct ggatcagatt       480
     atcaagatgg ctaaggctga gagctcagac acagaagagt atgagaaagt gtggaagaag       540
     atgccaactt attttgaatc aattatccaa cctcttctac acaaaacata gtttattgca       600
     tatcacattt tatcccaccc acgtgtgctt gcattctaga agtgtagcca gtttgggttg       660
     accttcttgt atgaaaatac aagtatatta cagtctaaac atatacatga tgtttgttca       720
     cttaagcttg acagtttgta aataattgtg tgtgattgtg cgtgtgtaaa tatatgtcaa       780
     tatatgactg tacacaagtg tgtggatgta aacacttgaa acaaataaat aaatatatac       840
     ctatcaactc aaataaatac ttgtgagtct tggcttctct atatacacac atagaaacat       900
     gagagtatca tacaagaccc attgcaaaaa tactgttaac tatgttttta caatgtcaaa       960
     accaaaaact gaaataccaa aaacatgaga aaatagaaaa tcaaaaacaa tgaatggtgc      1020
     taagcaccac atccggatgt ggtgcgtagc accattttca tacattaatc tataacctac      1080
     ttgtggcaaa aacacccata tgcatgaagt gcatagcact cttttatgga ttgaccacca      1140
     tgattacgtg aatgcatagc atcctcttga aaaaagcaga gcagaacaga ccacatcaag      1200
     tgcgaagcac tagatgttag catgctcgga acctggttat ctcacctaca tgatgacaga      1260
     aacttcagat tttgatttct ttgtgatggg tatcttcttt ggctgcttca ccacaccgaa      1320
     ctccttctca gtgtctagct caggaaagct cttgctagtg aaagcacctc caacagcttt      1380
     ctgaacaaca ttagtcgtga aattactgaa gctggacaaa tggtttattg ccttatcttc      1440
     tagtggctca aattcaaaca tcacagtgtc attggttttc atggacactg gcagatcagt      1500
     cctttcaatc ccccagaacc aaagagttct agagatgaca cagttctgca ctgagctgtc      1560
     atcaacagat acggacactt ggagattatg cttatcctcc aaagccagaa aattcgctag      1620
     agaacccaag acagcaaaat tcttgctaat tgggtagcga acctcgacct caacttgatc      1680
     tgaggggttc acataggact tgtctattat gcggagggta gtaattccac tagctctacc      1740
     cttaattcca atccagacca tagcaaaagt tgccactcta aagaatgggt aatgagtgag      1800
     aggttgatga aaccaatatg ggtcaacaag tatgttgaaa gttgctttcc tatgggcctt      1860
     cacagaatag tcctgtttgg ctatgaacat atcatacttg ttcaccttga catctgagaa      1920
     gctgaagggt tccaatccaa gcattgtggc agcttggtca atcgtaaccc taccctggtt      1980
     cagaggcctc ttggagagag ctagagattt ccgattctta ttatcaactc tcttttggga      2040
     ctcctcacta aggtcatcat agagtacctt actttttgaa gtggacaaaa gtcgggacaa      2100
     agccataatt aaagtatata ttagcgtaat ctcaaaagat atgccctgac tttgtgt         2157
//