ID   FJ602699; SV 1; linear; genomic RNA; STD; VRL; 2156 BP.
XX
AC   FJ602699;
XX
DT   02-JUL-2010 (Rel. 105, Created)
DT   05-AUG-2023 (Rel. 144, Last updated, Version 2)
XX
DE   Rice stripe virus isolate WD-JN segment RNA4, complete sequence.
XX
KW   .
XX
OS   Tenuivirus oryzaclavatae
OC   Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC   Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus.
XX
RN   [1]
RP   1-2156
RA   Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT   "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT   isolates in Korea and their phylogenetic relationships with Japan and China
RT   isolates";
RL   Plant Pathol. J. 25(2):142-150(2009).
XX
RN   [2]
RP   1-2156
RA   Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT   ;
RL   Submitted (01-JAN-2009) to the INSDC.
RL   Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL   Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
XX
DR   MD5; 02558176f0352a0ffade8fba86fde418.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2156
FT                   /organism="Tenuivirus oryzaclavatae"
FT                   /segment="RNA4"
FT                   /isolate="WD-JN"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:3052763"
FT   CDS             55..591
FT                   /codon_start=1
FT                   /product="putative SP"
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/TrEMBL:Q705B3"
FT                   /protein_id="ACR57050.1"
FT                   /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1245..2105)
FT                   /codon_start=1
FT                   /product="NSvc4"
FT                   /db_xref="GOA:D8L279"
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/TrEMBL:D8L279"
FT                   /protein_id="ACR57051.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT                   VPVIM"
XX
SQ   Sequence 2156 BP; 692 A; 435 C; 401 G; 628 T; 0 other;
     acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc gaagatgcaa        60
     gacgtacaaa ggacaataga agtttctgtt ggtcctattg taggcctaga ttacactcta       120
     ttgtatgaca ctctgcccga gactgttagc gataacatta ctcttcctga tttgaaagat       180
     ccagagagag tcacggaaga tactaagaag ctaatactca aaggctgtgt ttacatagca       240
     tatcatcacc cattggagac tgacaccctt ttcatcaaag tacacaaaca tataccagag       300
     ttttgtcact cattcttatc acacctgtta ggaggtgaag atgatgacaa tgctcttata       360
     gacattggtc tgttttttaa catgttgcaa ccctctttgg gcggttggat aactaagaat       420
     tttcttagac accctaatag gatgtctaag gaccaaatta aaatgctcct ggatcagatt       480
     atcaagatgg ctaaggctga gagctcagac acagaagagt atgagaaagt gtggaagaag       540
     atgccaactt attttgaatc aattatccaa ccccttctac acaaaacata atttattgca       600
     tatcacatct tccacccatg agtgcttgca tgctagaagt ggagccagtt tgggttgacc       660
     ttcttgtatg aaaatacgag tatattatag tctaaacaat atacatgatg tttgtccact       720
     taagcttgac agtttgtaaa taattgtgtg tgattgtgtg tgtgtgtata tatgttaata       780
     tataactgtg cacaggtatg tagatatgaa cacttgaaac aaataaattt atatattcct       840
     atcaactcat atacatactt gtgagtctta gctcttctat atacacacat agaaacatga       900
     gagtatcata caagacccat tgcaaaaata ctaataactt tgtttttaaa atgtcaaaac       960
     taaaaactga aataccaaaa acatgagaaa atagaaaatc aaaaacaatg aatggtgcta      1020
     agcaccacat ccggatgtgg tgcgtagcac cattttcata acattaatct ataacctact      1080
     agtggcaaaa acacccatat gcatgaagtg catagcactc tcttatggat tgactactat      1140
     gattacttga atgcatagca ttctcctgaa aaaatcagag aagaacagac cacatcaagt      1200
     gcgtagcact aaatgttagc atactccgga actggttatc tcacctacat gatgacagga      1260
     acttcagatt ttgatttctt tgtgatgggt atcttctttg gctgcttcac cacaccgaac      1320
     tccttctcag tgtctagctc agggaagctc ttgctagtga aagcacctcc aacagctttt      1380
     tgaacaacat tagtcgtgaa attactgaag ctggacaaat ggtttatcgc tttatcttct      1440
     agtggttcaa attcaaacat cacagtgtca ttagtcttca tggacactgg cagatcagtc      1500
     ctctcaatcc cccagaacca aagagttcta gagatgacac agttctgcac tgagctgtca      1560
     tcaacagata cggacacttg aagattatgc ttatcctcca aagccagaaa attcgctaga      1620
     gaacccaaga cagcaaaatt cttgctaatt gggtagcgaa cctctacctc aacttgatct      1680
     gaggagttca cataggactt gtctattatg cggagggtag ttattccact agctctaccc      1740
     ttaattccaa tccagaccat agcaaaagtt gccactctaa agaatgggta atgggtgaga      1800
     ggttgatgaa accaatatgg atcaacaagt atgttgaaag ttgctttcct atgggccttc      1860
     acagaatagt cctgtttggc tatgaacata tcatacttgt tcaccttgac atctgagaag      1920
     ctgaagggtt ccaatcctag cattgtggca gcttggtcaa tcgtgaccct accctggttc      1980
     agaggccttt tggagagagc tagagatttc ctattcttat tatcaactct cttttgggac      2040
     tcctcactaa ggtcatcata gagtacctta ctttttgaag tggacaaaag tcgagacaaa      2100
     gccataatta aagtatatat tagcttaatc tcaaaagata tgccctgact gtgtgt          2156
//