ID   FJ602698; SV 1; linear; genomic RNA; STD; VRL; 2140 BP.
XX
AC   FJ602698;
XX
DT   02-JUL-2010 (Rel. 105, Created)
DT   05-AUG-2023 (Rel. 144, Last updated, Version 2)
XX
DE   Rice stripe virus isolate SA-JN segment RNA4, complete sequence.
XX
KW   .
XX
OS   Tenuivirus oryzaclavatae
OC   Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC   Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus.
XX
RN   [1]
RP   1-2140
RA   Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT   "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT   isolates in Korea and their phylogenetic relationships with Japan and China
RT   isolates";
RL   Plant Pathol. J. 25(2):142-150(2009).
XX
RN   [2]
RP   1-2140
RA   Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT   ;
RL   Submitted (01-JAN-2009) to the INSDC.
RL   Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL   Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
XX
DR   MD5; 81f033860638317c33df9f0541323b71.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2140
FT                   /organism="Tenuivirus oryzaclavatae"
FT                   /segment="RNA4"
FT                   /isolate="SA-JN"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:3052763"
FT   CDS             55..591
FT                   /codon_start=1
FT                   /product="putative SP"
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/TrEMBL:Q52R49"
FT                   /protein_id="ACR57048.1"
FT                   /translation="MQDVQRTVEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1229..2089)
FT                   /codon_start=1
FT                   /product="NSvc4"
FT                   /db_xref="GOA:D8L277"
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/TrEMBL:D8L277"
FT                   /protein_id="ACR57049.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATVLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRRATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT                   VSVIM"
XX
SQ   Sequence 2140 BP; 685 A; 449 C; 395 G; 611 T; 0 other;
     acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc gaagatgcaa        60
     gacgtacaaa ggacagtaga agtttctgtt ggtcctattg taggcctaga ttacactcta       120
     ttgtatgaca ctctgcccga gactgttagc gataacatta ctctacctga tttgaaagat       180
     ccagagagag tcacggaaga tactaagaag ctaatactca aaggctgtgt ttacatagca       240
     tatcatcacc ccttggagac tgataccctt ttcatcaaag ttcacaaaca tataccagag       300
     ttttgtcact cattcctatc acacctttta ggaggtgaag atgatgacaa tgctctcata       360
     gacattggtc tgtttttcaa catgttgcaa ccctctttgg gcggttggat aaccaagaat       420
     tttcttagac accctaatag aatgtctaag gaccagatta aattgcttct ggatcagatt       480
     atcaagatgg ctaaggctga gagctcagac acagaagagt atgagaaagt gtggaagaag       540
     atgccaactt attttgaatc aattatccaa cctcttctac acaagacata gtttattgca       600
     tatcacattt tccaccaaca aaagcttgca ctctagaagt gtagccagtt tgggttgacc       660
     ttcttgtatg aaaatacaag tatattatag tctaaacaat atacatgatg tttgtttact       720
     ttagcttgac agtttgtaaa taattgtgtg tgattgagcg tgtgtgtata tatgtatcaa       780
     tatacaactg cacacaggtg tgcagatgca aacacctgaa acaaacaaac aaatatatac       840
     ctatcaaatc ttatacatgc ttgtgagtct tggctcctct acatacacac atacaagaac       900
     catagcaaaa atactaataa ctttgctttt acaatatcaa aaccaaaaac tgaaatacca       960
     aaaacattag aaaatagaaa atcaaaaaca atgaatggtg ctaagcacct catccggatg      1020
     tggtgcgtag caccattttc ataactttag tctataacct acttgtggca aaaacaccca      1080
     tatgcatgaa gtgcatagca ctctcttatg gattgactac tataattacg tgaatgcata      1140
     gcattctctt gaaaaaaagc agagcagaac agaccacatc aagtgcgtag cactagttgc      1200
     tagcatactc tggaactggt tatctcacct acatgatgac agaaacttca gattttgatt      1260
     tctttgtgat gggtatcttc tttggctgct tcaccacacc gaactccttc tcagtgtcca      1320
     gctcagggaa gctcttgctg gtgaaagcac ctccaacagc tttctgaaca acattagtcg      1380
     tgaaattact gaagctggac aaatggttta ttgccttatc ttctagtggt tcaaattcaa      1440
     acatcacagt atcattggtc ttcatggaca ctggcagatc agtcctttca atcccccaga      1500
     accaaagagt tctagagatg acacagttct gcactgagct gtcatcaaca gatacggaca      1560
     cttgaagatt atgcttatcc tccaaagcca gaaaattcgc tagagaaccc aagacagcaa      1620
     aattcttgct aattgggtag cgaacctcta cctcaacttg atctgaggag ttcacatagg      1680
     acttgtctat tatgcggagg gtagttattc cactagctct acccttgatt ccaatccaga      1740
     ccatagcaaa agttgccact ctaaagaatg gataatgggt gagaggttga tgaaaccaat      1800
     atggatcaac aagtatgttg aaagttgctc tcctatgggc cttcacagaa tagtcctgtt      1860
     tggctatgaa catatcatac ttgttcacct tgacatctga gaagctgaag ggttccaatc      1920
     caagcactgt ggcagcttgg tcaatcgtaa ccctaccctg gttcagaggc ctcttggaga      1980
     gagctaaaga tttcctattc ttattatcaa ctctcttttg ggactcctca ctaaggtcat      2040
     catagagtac cttacttttt gaagtggaca aaagtcgaga caaagccata attaaagtat      2100
     atattagctt aatctcaaaa gatatgccct gactgtgtgt                            2140
//