ID   FJ602696; SV 1; linear; genomic RNA; STD; VRL; 2158 BP.
XX
AC   FJ602696;
XX
DT   02-JUL-2010 (Rel. 105, Created)
DT   05-AUG-2023 (Rel. 144, Last updated, Version 2)
XX
DE   Rice stripe virus isolate SC-CN segment RNA4, complete sequence.
XX
KW   .
XX
OS   Tenuivirus oryzaclavatae
OC   Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC   Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus.
XX
RN   [1]
RP   1-2158
RA   Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT   "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT   isolates in Korea and their phylogenetic relationships with Japan and China
RT   isolates";
RL   Plant Pathol. J. 25(2):142-150(2009).
XX
RN   [2]
RP   1-2158
RA   Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT   ;
RL   Submitted (01-JAN-2009) to the INSDC.
RL   Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL   Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
XX
DR   MD5; e8557082881093dac21a26588cd49f18.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2158
FT                   /organism="Tenuivirus oryzaclavatae"
FT                   /segment="RNA4"
FT                   /isolate="SC-CN"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:3052763"
FT   CDS             55..591
FT                   /codon_start=1
FT                   /product="putative SP"
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ICC6"
FT                   /protein_id="ACR57044.1"
FT                   /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1247..2107)
FT                   /codon_start=1
FT                   /product="NSvc4"
FT                   /db_xref="GOA:Q52R52"
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/TrEMBL:Q52R52"
FT                   /protein_id="ACR57045.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT                   VSVIM"
XX
SQ   Sequence 2158 BP; 691 A; 448 C; 396 G; 623 T; 0 other;
     acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc gaagatgcaa        60
     gacgtacaaa ggacaataga agtttctgtt ggtcctattg taggcctaga ttacactcta       120
     ttgtatgaca ctctgcccga gactgttagc gataacatta ctctacctga tttgaaagat       180
     ccagagagag tcacggaaga taccaagaaa ctaatactca aaggctgtgt ttacatagca       240
     tatcatcacc ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag       300
     ttttgtcact cattcctatc tcacctttta ggaggtgaag atgatgacaa tgctcttata       360
     gacattggtc tgtttttcaa catgttgcaa ccctctttgg gcggttggat aaccaagaat       420
     tttcttagac accctaatag aatgtctaag gaccaaatta aactgctcct ggatcagatt       480
     atcaagatgg ctaaggctga gagctcagac acagaagagt atgagaaagt gtggaagaag       540
     atgccaactt attttgaatc aattatccaa cctcttctac acaaaacata gtttatttcg       600
     tatcacattt tccacccacg agtgcttgca ttctagaagt ggagccagtt tgggttgacc       660
     ttcttgtatg aaaatacgaa tataaattat atagtctaaa caatatacat gatgtttgtc       720
     cacttaagct tgacagtttg taaataattg tgtgtgattg tgtgtgtgtg tatatatgtt       780
     aatatatacc tgtgcacagg tgtatagata taaacacttg aaacaaataa attaatatat       840
     tcccatcaac tcatatacat acttgtgagt cttagctcct ctgtatacac acatagaaac       900
     atgagagtat catacaggac ccattgcaaa tactaataac tttgttttac aatgtcaaaa       960
     ctaaaaactg aaataccaaa aacatgagaa aatagaaaat caaaaacaat gaatggtgct      1020
     aagcaccaca tccggatgtg gtgcgtagca ccattttcat aacattaatc cataacctac      1080
     tagtagcaaa aacacccata tgcatgaagc gcatagcact cctttatgga ttgactacta      1140
     tgattacgtg aatgcatagc attctcctga aaaaaatcag agcagagcag acctcatcaa      1200
     gtgcgtagca ctagatatta gcacactccg gaactggtta tctcacctac ataatgacag      1260
     aaacttcaga ttttgatttc tttgtgatag gtatcttctt tggctgcttc accacaccga      1320
     actccttctc agtatctagc tcagggaagc tcttgctggt gaaagcacct ccaacagctt      1380
     tctgaacaac attagtcgta aaattactga agctggacaa atggtttatg gccttatctt      1440
     ctagtggttc aaactcaaac atcacagtgt cattggtctt catggacact ggcagatcag      1500
     tcctctcaat cccccagaac caaagagttc tagagatgac acagttctgc actgagctgt      1560
     catcaacaga tactgacact tgaagattat gcttatcctc caaagccaga aaatttgcta      1620
     gagaacccaa gacagcaaaa ttcttgctaa ttgggtagcg aacctctacc tcaacttgat      1680
     ctgaggggtt cacataggac ttgtctatta tgcggagggt tgttattcca ctagctctac      1740
     ccttaattcc aatccagacc atggcaaaag ttgccactct aaagaatggg taatgggtga      1800
     gaggttgatg aaaccaatat ggatcaacaa gtatgttaaa agttgctttc ctatgggcct      1860
     tcacagagta gtcctgtttg gctatgaaca tatcatactt gttcactttg acatctgaga      1920
     agctgaaggg ttccaatcca agcatggtgg cagcttggtc aattgtaacc ctaccctggt      1980
     tcagaggcct cttggagaga gctagagatt tcctattctt attatcaact ctcttttggg      2040
     actcctcact aaggtcatca tagagtacct tactttttga agtggacaaa agtcgagaca      2100
     aagccataat taaagtatat attagcttaa tctcaaaaga tataccctga ctttgtgt        2158
//