ID   FJ602694; SV 1; linear; genomic RNA; STD; VRL; 2139 BP.
XX
AC   FJ602694;
XX
DT   02-JUL-2010 (Rel. 105, Created)
DT   05-AUG-2023 (Rel. 144, Last updated, Version 2)
XX
DE   Rice stripe virus isolate JD-JN segment RNA4, complete sequence.
XX
KW   .
XX
OS   Tenuivirus oryzaclavatae
OC   Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC   Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus.
XX
RN   [1]
RP   1-2139
RA   Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT   "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT   isolates in Korea and their phylogenetic relationships with Japan and China
RT   isolates";
RL   Plant Pathol. J. 25(2):142-150(2009).
XX
RN   [2]
RP   1-2139
RA   Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT   ;
RL   Submitted (01-JAN-2009) to the INSDC.
RL   Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL   Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
XX
DR   MD5; 72c76a771891fdf5d4a93d8393755f76.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2139
FT                   /organism="Tenuivirus oryzaclavatae"
FT                   /segment="RNA4"
FT                   /isolate="JD-JN"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:3052763"
FT   CDS             55..591
FT                   /codon_start=1
FT                   /product="putative SP"
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/TrEMBL:Q52R49"
FT                   /protein_id="ACR57040.1"
FT                   /translation="MQDVQRTVEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1228..2088)
FT                   /codon_start=1
FT                   /product="NSvc4"
FT                   /db_xref="GOA:D8L269"
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/TrEMBL:D8L269"
FT                   /protein_id="ACR57041.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRRATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKTSKSE
FT                   VSVIM"
XX
SQ   Sequence 2139 BP; 682 A; 445 C; 402 G; 610 T; 0 other;
     acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc gaagatgcaa        60
     gacgtacaaa ggacagtaga agtttctgtt ggtcctattg taggcctaga ttacactcta       120
     ttgtatgaca ctctgcccga gactgttagc gataacatta ctctacctga tttgaaagat       180
     ccagagaggg tcacggaaga tactaagaag ctaatactca aaggctgtgt ttacatagca       240
     tatcatcacc ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag       300
     ttttgtcact cattcctatc acacctttta ggaggtgaag atgatgacaa tgctctcata       360
     gacattggtc tgtttttcaa catgttgcaa ccctctttgg gcggttggat aaccaagaat       420
     tttcttagac accctaacag gatgtctaag gaccagatta aattgctcct ggatcagatt       480
     atcaagatgg ctaaggctga gagctcagac acagaagagt atgagaaagt gtggaagaag       540
     atgccaactt attttgaatc aattatccaa cctcttctac acaagacata gtttattgca       600
     tatcacattt tccaccaacg agagcttgca ctctagaagt ggagccagtt tgggttgacc       660
     ttcttgtatg aaaatacaag tatattatag tctaaacaat atacatgatg tttgtttact       720
     taagctttac agtttgtaaa taattgtgtg tgattgagcg tgtgtgtata tatgtattaa       780
     tatataactg tacacaggtg tgcagatgca aacacctgaa acaaataaac aaatatatac       840
     ctatcaaatc atatacatgc ttgtgagtct tagctcctct acatacacac atacaagaac       900
     cattgcaaaa atactaataa ctttgctttt ataatatcaa aaccaaaaac tgaaatacca       960
     aaaacatgag aaaatagaaa atcaaaaaca atgaatggtg ctaagcacca catccggatg      1020
     tggtgcgtag caccattttc ataacatttg tctataacct acttgtggca aaaacaccca      1080
     tatgcatgaa gtgcatagca ctctcttatg gattgaccac tataattacg tgaatgcata      1140
     gcattctctt ggaaaaagca gagcataaca gaccacataa agtgcgtagc actagatgct      1200
     agcatactct ggaactggtt atctcaccta catgatgaca gaaacttcag attttgatgt      1260
     ctttgtgatg ggtatcttct ttggctgctt caccacaccg aactccttct cagtgtctag      1320
     ctcagggaag ctcttgctgg tgaaagcacc tccaacagct ttctgaacaa cattagtcgt      1380
     gaaattactg aagctggaca aatggtttat tgccttatct tctagtggtt caaattcaaa      1440
     catcacagtg tcattggtct tcatggacac tggcagatca gtcctttcaa tcccccagaa      1500
     ccaaagagtt ctagagatga cacagttctg cactgagctg tcatcaacag atacggacac      1560
     ttgaagatta tgcttatcct ccaaagccag aaaattcgct agagaaccca agacagcaaa      1620
     attcttgcta attgggtagc gaacctctac ctcaacttga tctgaggagt tcacatagga      1680
     cttgtctatt atgcggaggg tagttattcc actagctcta cccttgattc caatccagac      1740
     catagcaaaa gttgccactc tgaagaatgg ataatgggtg agaggttgat gaaaccaata      1800
     tggatcaaca agtatgttga aagttgctct cctatgggcc ttcacagaat agtcctgttt      1860
     ggctatgaac atatcatact tgttcacctt gacatctgag aagctgaagg gttccaatcc      1920
     aagcattgtg gcagcttggt caatcgtaac cctaccctgg ttcagaggcc tcttggagag      1980
     agctaaagat ttcctattct tattatcaac tctcttttgg gactcctcac taaggtcatc      2040
     atagagtacc ttactttttg aagtggacaa aagtcgagac aaagccataa ttaaagtata      2100
     tattagctta atctcaaaag atatgccctg actgtgtgt                             2139
//