ID   FJ602693; SV 1; linear; genomic RNA; STD; VRL; 2157 BP.
XX
AC   FJ602693;
XX
DT   02-JUL-2010 (Rel. 105, Created)
DT   05-AUG-2023 (Rel. 144, Last updated, Version 2)
XX
DE   Rice stripe virus isolate MA-JN segment RNA4, complete sequence.
XX
KW   .
XX
OS   Tenuivirus oryzaclavatae
OC   Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC   Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus.
XX
RN   [1]
RP   1-2157
RA   Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT   "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT   isolates in Korea and their phylogenetic relationships with Japan and China
RT   isolates";
RL   Plant Pathol. J. 25(2):142-150(2009).
XX
RN   [2]
RP   1-2157
RA   Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT   ;
RL   Submitted (01-JAN-2009) to the INSDC.
RL   Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL   Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
XX
DR   MD5; cf81dca20d3d96a34e9580a812443562.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2157
FT                   /organism="Tenuivirus oryzaclavatae"
FT                   /segment="RNA4"
FT                   /isolate="MA-JN"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:3052763"
FT   CDS             55..591
FT                   /codon_start=1
FT                   /product="putative SP"
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/TrEMBL:Q705B3"
FT                   /protein_id="ACR57038.1"
FT                   /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1246..2106)
FT                   /codon_start=1
FT                   /product="NSvc4"
FT                   /db_xref="GOA:D8L267"
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/TrEMBL:D8L267"
FT                   /protein_id="ACR57039.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDDKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGVERTDLPVSMKTSDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT                   VSVIM"
XX
SQ   Sequence 2157 BP; 696 A; 445 C; 396 G; 619 T; 1 other;
     acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc gaagatgcaa        60
     gacgtacaaa ggacaataga agtttctgtt ggtcctattg taggcctaga ttacactcta       120
     ttgtatgaca ctctgcccga gactgttagt gataacatta ctctacctga tttgaaagat       180
     ccagagagag tcacggaaga tactaagaag ctaatactca aaggctgtgt ttacatagca       240
     tatcatcacc ccctagagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag       300
     ttttgtcact cattcttatc acacctttta ggaggtgaag atgatgacaa tgctcttata       360
     gacattggtc tgtttttcaa catgttgcaa ccctctttgg gcggttggat aaccaagaat       420
     tttcttagac accctaatag gatgtctaaa gatcaaatta aaatgctcct ggatcaaatt       480
     atcaagatgg ctaaggctga gagctcggac acagaggagt atgaaaaagt gtggaagaag       540
     atgccaactt attttgaatc aattatacaa cctcttctac acaaaacata gtttattgca       600
     taccacattt ttcctaccca cgagtgcttg cattctagaa gtggagccag tttgggttga       660
     ccttcttgta tgaaaataca agtatattat agtctaaaca atatgcatga tgtttgttca       720
     cttaagcttt acagcttgta agtaattgtg tgtgattgtg cgtgtgtata tatatgttaa       780
     tatataactg tgcacaggtg tgtagatgta aacacttgaa acaaataaat gaatatatac       840
     ctatcaacac atatacatac ttgtgagtct tggctcctct ataaacacat aaaaacatga       900
     gagtatcata caagacccat tgcaaaaata ccaataactt agtttttaca atgtcaaaac       960
     taaaaactga aataccaaaa acatgagaaa atagaaaatc aaaaactatg aatggtgcta      1020
     agcaccacat ccggatgtgg tgcatagcac cattttcata acattaatct ataacctact      1080
     agttgcaaaa acacccatat gcatgaagtg catagcactc tcttatggat tgactactat      1140
     gattacgtga atgcatagca tcctattgaa aaaacagagc aaaacagacc acatcaagtg      1200
     cgtagcacca gatgttagcc tactaccgga actagttatc ttcacctaca tgatgacaga      1260
     aacctcagat tttgatttct ttgtgatggg tatcttcttt ggctgcttca ccacaccgaa      1320
     ctctttctca gtgtctagct cagggaagct cttgctggtg aaagcacctc ctacagcttt      1380
     ctgaacaaca ttagtcgtga aattactgaa gctggacaaa tggtttatag ccttatcttc      1440
     tagtggttca aattcaaaca tcacagtgtc actggtcttc atggacactg gcagatcagt      1500
     cctttcaacc ccccagaacc aaagagttct agagatgaca cagttctgca ctgagctgtc      1560
     atcaacagat acggacactt gaagattatg cttatcctcc aaagccagaa aattcgctag      1620
     agaacccaag acagcaaaat tcttgctaat tgggtagcga acctctacct caacttgatc      1680
     tgaggggttc acataggatt tgtctattat gcggagggta gttattccac tagctctacc      1740
     cttaattcca atccagacca tagcaaaagt tgccactcta aagaatgggt aatgggtgag      1800
     aggttgatga aaccaatatg gatcaacaag tatgttgaaa gttgctttcc tatgggcctt      1860
     cacagaatag tcctgtttgg ctatgaacat atcatacttg ttcaccttga catctgagaa      1920
     gctgaasggt tccaatccaa gcattgtggc agcctggtca atcgtgaccc taccctggtt      1980
     cagaggcctc ttggagagag ctagagattt cctattctta tcatcaactc tcttttggga      2040
     ctcctcacta aggtcatcat agagtacctt actttttgaa gtggacaaaa gtcgagacaa      2100
     agccataatt aaagtatata ttagcttaat ctcaaaagat ataccctgac tttgtgt         2157
//