ID FJ601917; SV 2; circular; genomic DNA; STD; VRL; 2612 BP. XX AC FJ601917; XX DT 07-MAY-2009 (Rel. 100, Created) DT 17-JUL-2009 (Rel. 101, Last updated, Version 2) XX DE Malvastrum yellow mosaic Jamaica virus isolate Ma179A73 segment DNA-A, DE complete sequence. XX KW . XX OS Malvastrum yellow mosaic Jamaica virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2612 RA Graham A.P., Roye M.E.; RT "Molecular characterization and phylogeny of two begomoviruses infecting RT Malvastrum americanum in Jamaica"; RL Unpublished. XX RN [2] RP 1-2612 RA Graham A.P., Roye M.E.; RT ; RL Submitted (31-DEC-2008) to the INSDC. RL Biotechnology Centre, University of the West Indies, 2 St. John's Close, RL Mona Campus, St. Andrew, Jamaica XX RN [3] RC Sequence update by submitter RP 1-2612 RA Graham A.P., Roye M.E.; RT ; RL Submitted (15-JUL-2009) to the INSDC. RL Biotechnology Centre, University of the West Indies, 2 St. John's Close, RL Mona Campus, St. Andrew, Jamaica XX DR MD5; 4980dc31095072b9bb238205a992f44d. DR EuropePMC; PMC6344024; 30673741. XX CC On Jul 15, 2009 this sequence version replaced gi:229358259. XX FH Key Location/Qualifiers FH FT source 1..2612 FT /organism="Malvastrum yellow mosaic Jamaica virus" FT /segment="DNA-A" FT /host="Malvastrum americanum" FT /isolate="Ma179A73" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2005" FT /clone="pMa179A73" FT /db_xref="taxon:376612" FT CDS 186..941 FT /codon_start=1 FT /product="CP" FT /note="coat protein; encapsidation" FT /db_xref="GOA:C3UP36" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C3UP36" FT /protein_id="ACQ57348.1" FT /translation="MSKRDAPWRSMAGMSKVRRTLNYSPRAGLGPKFNKAAEWVNRPMY FT KKPRIYRTLRTSDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI FT KNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1083..1472) FT /codon_start=1 FT /product="TrAP" FT /note="transcription activator protein" FT /db_xref="GOA:C3UP38" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C3UP38" FT /protein_id="ACQ57352.1" FT /translation="MLSSSPSQPPSIKKAHKQAKRRAIRRRRIDLECGCSIYFHIDCTG FT HGFTHRGTHHCTSGREWRVYLEDRKSPLFHDIQSRRPVIHQNQGVSHTNTVQPQPEESV FT GSPQSLLELPSLDDIDDSFWVNLFS" FT CDS complement(1384..2469) FT /codon_start=1 FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:C3UP39" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C3UP39" FT /protein_id="ACQ57350.1" FT /translation="MPSVKRFKINAKNYFLTYPDCSLSKEEALSQLQNLSTPVNKKFIK FT ICREFHQNGKPHLHVLIQFEGKYACTNNRFFDLVPTTRSTHFHPNIQGARSSSDVKSYV FT NKGGDTLEWGEFQIDGRSARGGCQSANDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANAHRIFMKAPDPWSPPFPLSSFTNVPDEMQEWSDSYFGRGAAARPERPVSLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSKVFSNDVEYNIIDDVAPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLNKEENTGLRNWTLKNAIFITLT FT APLYQEGTQTSQEEGHQETQD" FT CDS complement(1384..1782) FT /codon_start=1 FT /product="REn" FT /note="replication enhancer protein" FT /db_xref="GOA:C3UP53" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:C3UP53" FT /protein_id="ACQ57351.1" FT /translation="MWARALGPHNYLSGHLDFNSKVFSNDVEYNIIDDVAPQYLKLKHW FT KELLGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLNKEENTGLRNWTLKN FT AIFITLTAPLYQEGTQTSQEEGHQETQD" FT CDS complement(2055..2312) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C3UP40" FT /protein_id="ACQ57349.1" FT /translation="MGSLISTCLYSSKGNMHARITDSSTWYPQLGQHISIQTYRELGRA FT PTSSPMSTRAETHWNGGNSRSTVEVLEEVANRLTTHMPRR" XX SQ Sequence 2612 BP; 657 A; 580 C; 612 G; 763 T; 0 other; accggatggc cgcgctttgg tgacactgtc accctcgctt taatttcgaa ttaaagcggg 60 ctccgctttt gttctgacca atcatattgc gcctgacgcg cctaaatatt ttaaacaact 120 tgggccctaa gttgttgtct gggctatata tgaaaagcgt attgggccat agtggttaac 180 ccaatatgtc taagcgggat gccccatggc gttcaatggc gggaatgtca aaggtccgcc 240 gtactcttaa ttattctcct cgtgcaggtt tgggccctaa gttcaacaag gccgctgagt 300 gggtgaacag gcccatgtac aagaagccca ggatatatcg gacgctaagg acctcagatg 360 tgccgagagg ctgtgaaggc ccgtgcaagg tccagtcata tgaacagcgc catgatatct 420 cacatgtcgg gaaggtcatg tgtatatccg atgtcacacg tggtaatggc atcacccatc 480 gtgtgggcaa gcgtttctgt gttaagtctg tgtatatatt agggaagata tggatggatg 540 agaacatcaa gctcaagaac cacacgaaca gcgttatgtt ctggttggtc agggatcgta 600 gaccgtatgg cactcctatg gatttcggtc aggtattcaa catgtatgac aacgagccta 660 gcactgcaac catcaagaat gatctacgtg atcgttatca ggtcatgcac aggttctatg 720 gcaaggtcac aggtggtcaa tatgccagca acgagcaggc attggtcagg cgattctgga 780 aggtcaacaa tcatgtggta tacaatcatc aagaggctgg caaatatgag aatcatacgg 840 agaatgccct attattgtac atggcatgta ctcatgcctc taaccccgtg tatgctacat 900 tgaaaattcg gatctatttt tatgattcga taacaaatta ataaaattta aattttattt 960 catgatcttc tagtacatat cttacatacg atttgtctgt tgcaaactga acagctctaa 1020 ttacattgtt aattgaaatc acgcctaact cgtctaaata catattaact agttgtctaa 1080 acctaactaa ataagttgac ccagaagctg tcatcgatgt cgtccagact tggaagttca 1140 agtaagcttt gtggagaccc aacactctcc tcaggttgtg gttgaaccgt atttgtatgt 1200 gatacaccct ggttctggtg tataacaggt cttctactct gtatatcatg aaatagaggg 1260 gattttctat cttccagata tacacgccat tctctgcctg atgtgcagtg atgagttccc 1320 ctgtgcgtga atccatgtcc tgtacagtct atgtggaagt agatggagca cccgcactct 1380 agatcaatcc tgcgtctcct gatggccctc ctcttggctt gtttgtgtgc cttcttgata 1440 gaggggggct gtgagggtga tgaagatagc attcttgaga gtccagttcc tgagacctgt 1500 gttttcctct ttgttcagga aatctttata gctggcaccc tcaccaggat tgcaaagcac 1560 gattgctggt atcccgcctt taatttgaac tggcttcccg tacttgcaat ttgattgcca 1620 gtccttctgg gcccccagaa gttctttcca gtgctttagc tttagatatt gcggtgcgac 1680 gtcatcaatg atgttatact ccacatcgtt tgagaagacc tttgaattga agtccaggtg 1740 gccactgaga tagttatgtg ggcctaaggc acgagcccac atcgtcttcc ctgttctcga 1800 gtcaccctct actatgagac ttactggtct ctccggccgc gcagcggcac ctctcccaaa 1860 ataactgtcc gaccattctt gcatctcgtc gggaacgtta gtgaaagagg agaggggaaa 1920 cggaggagac catggatccg gagccttcat gaaaatccga tgagcattgg caaccaaatt 1980 gtgatgttga aggaagaaat gttgaggctg ctcctccttg attatttgaa gagcctcttc 2040 agcagaagag gcattcaacg ccttggcata tgtgtcgtta gccgattggc aacctcctct 2100 agcacttcta ccgtcgatct ggaattcccc ccattccagt gtgtctccgc ccttgttgac 2160 ataggacttg acgtcggagc tcgacctagc tccctgtatg tttggatgga aatgtgttga 2220 ccgagttgtg ggtaccaggt cgaagaatct gttattcgtg catgcatatt tcccttcgaa 2280 ctgtataagc acgtggagat gaggcttccc attttgatga aactctctgc agatcttgat 2340 aaacttcttg tttactggag ttgaaaggtt ttgcagttga gataatgctt cctctttgct 2400 aagtgaacag tctggataag ttaggaaata gtttttggca tttattttaa aacgtttaac 2460 tgatggcatt tttgtaataa tagggtgttc cccaattgag ctcctctcaa acttgctcat 2520 gcaattgggg aaacggggta caatatatac tagaaccctc aatagaactt tagatctcgt 2580 tcgcacacgt ggcggccatc cgctataata tt 2612 //