Dbfetch
ID FJ600485; SV 1; circular; genomic DNA; STD; VRL; 2585 BP. XX AC FJ600485; XX DT 07-MAY-2009 (Rel. 100, Created) DT 07-MAY-2009 (Rel. 100, Last updated, Version 1) XX DE Malvastrum yellow mosaic Jamaica virus isolate Ma9bB26 segment DNA-B, DE complete sequence. XX KW . XX OS Malvastrum yellow mosaic Jamaica virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2585 RA Graham A.P., Roye M.E.; RT "Molecular characterization and phylogeny of two begomoviruses infecting RT Malvastrum americanum in Jamaica"; RL Unpublished. XX RN [2] RP 1-2585 RA Graham A.P., Roye M.E.; RT ; RL Submitted (30-DEC-2008) to the INSDC. RL Biotechnology Centre, University of the West Indies, 2 St. John's Close, RL Mona Campus, St. Andrew, Jamaica XX DR MD5; d449c99e64a596b46961935201c788f7. XX FH Key Location/Qualifiers FH FT source 1..2585 FT /organism="Malvastrum yellow mosaic Jamaica virus" FT /segment="DNA-B" FT /host="Malvastrum americanum" FT /isolate="Ma9bB26" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2003" FT /db_xref="taxon:376612" FT CDS 426..1196 FT /codon_start=1 FT /product="NSP" FT /note="nuclear shuttle protein" FT /db_xref="GOA:C3UP48" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:C3UP48" FT /protein_id="ACQ57346.1" FT /translation="MYSFKNKRGFVFNQRRFHSRNIVSNRSTRFKKSDGKRRLGNSAKS FT NDEPKMSAQCIHENQYSPEFVMSNNSAISTFISYPNLGKTEPSRSRSYIKLKRLRFKGT FT VKIERVQSDVNMDGYVPKLEGVFSLVVVVDRKPHLGQTGCLHTFDELFGALIHSHGNLS FT ITPSMKDRFYIRHVFKRVLSVDKETTMFDVEGCTSLSNRRFNCWASFKDLDHDSCKGVY FT DNISKNALLVYYCWMSDTMSKASSFVSFDLDYVG" FT CDS complement(1247..2128) FT /codon_start=1 FT /product="MP" FT /note="movement protein" FT /db_xref="GOA:C3UP49" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:C3UP49" FT /protein_id="ACQ57347.1" FT /translation="MDSQLVNPPCAFNYIESHRDEYQLCHDLTEIILQFPSTAAQISAR FT LSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVNIPFRAPTVKILS FT KQFTDKDVDFSHVDYGKWERKPIRCASMSRVGLRGPIEIRPGESWASRSTLGMGHSDVD FT SEVENELHPYRHMSRLGTTVLDPGESASVLGAQRAESNITMSLGQLNELVRTTVQECIN FT SNCRASQPKSLQ" XX SQ Sequence 2585 BP; 681 A; 528 C; 570 G; 806 T; 0 other; accggatggc cgcccgcgcc cccctccctc acgcgcgtgg agttctccca ttctcacgcg 60 gcgctctgat ggtgccacct gtcctctccg ctctcgctcc ctctcccaga tggtgccacc 120 tggctcccgc tccccaacgt gcttagtgcg cgagtgtgct ttattccact gactgacctt 180 taattcaaat taaagaggtg tttgactaga tcgcgcgagt tgggccaaat ttgactggcc 240 cagtttatga tacactcgac gtggccgatt atcgaccatg ttgctgagtt agtttaatat 300 acatgttgaa caaccttgtc gtatttaaat ggtatactta tatggcgtat tttatgtaac 360 tcagctgtat accacgttta tattactagc cataattaca atttatctgt cattaatatt 420 tgatcatgta ttcttttaag aataaacgtg gtttcgtctt taatcagcgt cgatttcatt 480 caaggaacat tgtgtctaat cgatcaacta gatttaagaa atctgatggg aaacgtcgac 540 tgggtaattc agctaagtcc aatgatgagc ctaagatgtc agcccagtgc atacatgaga 600 atcaatatag tccagagttt gttatgtcaa ataactcggc tatatctaca tttatcagtt 660 atcctaacct gggaaagaca gaacccagtc gaagtaggtc ctatatcaag ttgaaacgac 720 tccgtttcaa agggactgtt aagattgagc gtgttcaatc tgatgttaac atggatggtt 780 atgtccccaa gttggaaggt gtcttctcac tcgttgtagt tgtggatcgt aaaccacatt 840 tgggtcagac tggttgtttg catacattcg acgaactatt tggtgcattg atccacagtc 900 atggtaacct cagcataact ccttctatga aagaccgttt ctatattaga cacgtgttca 960 aacgtgtgtt gtctgtggat aaggaaacga cgatgtttga cgtggaaggg tgtacatcgc 1020 tgtctaatag acgattcaat tgttgggcat cgttcaaaga tcttgaccat gactcgtgca 1080 agggtgttta tgataatatt agcaagaatg ctctattagt gtattattgt tggatgtcag 1140 acactatgtc taaagcatct agttttgtat cgttcgatct cgattatgtt gggtgattaa 1200 taaaataaca ttttattata tattattgaa taataatatt aaaactctat tgcaaagatt 1260 tgggctgaga agccctacaa ttactattaa tacactcttg gactgttgtc ctgactaatt 1320 catttaattg gcccaatgac atcgtgatgt tggattccgc tctctgggcc cctaataccg 1380 aagcagactc tcccgggtcc agaactgttg tgcctagcct gctcatatgt ctgtatggat 1440 gcagttcgtt ttctacttct gagtccacat ctgaatggcc cattcccaat gtactcctgg 1500 aagcccatga ttcaccaggc cttatttcaa ttgggcctct taagcctact ctcgacatgg 1560 atgcgcatcg tatgggcttc ctctcccatt tcccatagtc cacatgcgag aagtccacat 1620 ctttgtctgt aaactgtttg gacaggatct tgaccgtcgg tgcccgaaac gggatattca 1680 ccgagtgttt ggctgtggac aatttcagct tccccttgaa cttggcgaag tgggttctct 1740 gatgaacatt cgtatcagaa actctgtaat agagtttcca aggaattggg tcttttagag 1800 agaagaagga agctgagaaa tagtggagat ctatgttgca tctgatcgga aaagtccatg 1860 acgcctgtaa tgactcattg tctgtcatcc tcttgtcatg gatctccacg attactgtcc 1920 cagaagcgtt aattgggacc tgttgcctgt actctatgac acaatggtcg atcttcatac 1980 agcttctgct aagtctagcg cttatttgtg ccgccgtcga agggaattgc aagattatct 2040 cagttaagtc atggcagagt tgatattcat ctctgtggga ctctatgtag ttgaaggcac 2100 atgggggatt tactagctga gaatccatct gagaaatgaa ggccgcgcag cggcactggt 2160 tgctgaggtt gatctgctaa agaaaaatct agggtttttc tgtttttgaa cagactaata 2220 atttcatggg aaggatagat gatttctggg aaacccagaa gtttaaagga aataaggaag 2280 aacacttcgt ttaagttcac agaaagttta tagtgttctt gagaaaaggg agaaatatgg 2340 aaagggaaaa tgatgtttat tgtagttaga ttctgacatg gattatatag acagtcatat 2400 attttagtta taatggcatt ttccgtaaat atgggtgttc ccaatttgag gctctgggtg 2460 ttccccaatt gaggctctct caaacttgct catgcaattg gggaaacggg gtacaatata 2520 tactagaacc ctcaatagaa cttaagatct cgttcgcaca cgtggcggcc atccgctata 2580 atatt 2585 //