ID FJ600482; SV 2; circular; genomic DNA; STD; VRL; 2611 BP. XX AC FJ600482; XX DT 07-MAY-2009 (Rel. 100, Created) DT 24-JUL-2009 (Rel. 101, Last updated, Version 2) XX DE Malvastrum yellow mosaic Jamaica virus isolate 9bA43 segment DNA-A, DE complete sequence. XX KW . XX OS Malvastrum yellow mosaic Jamaica virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2611 RA Graham A.P., Roye M.E.; RT "Molecular characterization and phylogeny of two begomoviruses infecting RT Malvastrum americanum in Jamaica"; RL Unpublished. XX RN [2] RP 1-2611 RA Graham A.P., Roye M.E.; RT ; RL Submitted (30-DEC-2008) to the INSDC. RL Biotechnology Centre, University of the West Indies, 2 St. John's Close, RL Mona Campus, St. Andrew, Jamaica XX RN [3] RC Sequence update by submitter RP 1-2611 RA Graham A.P., Roye M.E.; RT ; RL Submitted (22-JUL-2009) to the INSDC. RL Biotechnology Centre, University of the West Indies, 2 St. John's Close, RL Mona Campus, St. Andrew, Jamaica XX DR MD5; 689322e37838c13bf1f8de21a64c36e1. XX CC On Jul 22, 2009 this sequence version replaced gi:229358241. XX FH Key Location/Qualifiers FH FT source 1..2611 FT /organism="Malvastrum yellow mosaic Jamaica virus" FT /segment="DNA-A" FT /host="Malvastrum americanum" FT /isolate="9bA43" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2003" FT /clone="pMa9bA43" FT /db_xref="taxon:376612" FT CDS 185..940 FT /codon_start=1 FT /product="CP" FT /note="coat protein; encapsidation" FT /db_xref="GOA:C3UP36" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C3UP36" FT /protein_id="ACQ57334.1" FT /translation="MSKRDAPWRSMAGMSKVRRTLNYSPRAGLGPKFNKAAEWVNRPMY FT KKPRIYRTLRTSDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI FT KNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(937..1335) FT /codon_start=1 FT /product="REn" FT /note="replication enhancer protein" FT /db_xref="GOA:C3UP37" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C3UP37" FT /protein_id="ACQ57338.1" FT /translation="MDSRTGELITAHQAENGVYIWKIENPLYFMIYRVEDLLYTRTRVY FT HIQIRFNHNLRRVLGLHKAYLNFQVWTTSMTASGSTYLVRFRQLVNMYLDELGVISINN FT VIRAVQFATDKSYVRYVLEDHEIKFKFY" FT CDS complement(1082..1471) FT /codon_start=1 FT /product="TrAP" FT /note="transcription activator protein" FT /db_xref="GOA:C3UP38" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C3UP38" FT /protein_id="ACQ57337.1" FT /translation="MLSSSPSQPPSIKKAHKQAKRRAIRRRRIDLECGCSIYFHIDCTG FT HGFTHRGTHHCTSGREWRVYLEDRKSPLFHDIQSRRPVIHQNQGVSHTNTVQPQPEESV FT GSPQSLLELPSLDDIDDSFWVNLFS" FT CDS complement(1383..2468) FT /codon_start=1 FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:C3UP39" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C3UP39" FT /protein_id="ACQ57336.1" FT /translation="MPSVKRFKINAKNYFLTYPDCSLSKEEALSQLQNLSTPVNKKFIK FT ICREFHQNGKPHLHVLIQFEGKYACTNNRFFDLVPTTRSTHFHPNIQGARSSSDVKSYV FT NKGGDTLEWGEFQIDGRSARGGCQSANDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANAHRIFMKAPDPWSPPFPLSSFTNVPDEMQEWSDSYFGRGAAARPERPVSLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSKVFSNDVEYNIIDDVAPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLNKEENTGLRNWTLKNAIFITLT FT APLYQEGTQTSQEEGHQETQD" FT CDS complement(2054..2311) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C3UP40" FT /protein_id="ACQ57335.1" FT /translation="MGSLISTCLYSSKGNMHARITDSSTWYPQLGQHISIQTYRELGRA FT PTSSPMSTRAETHWNGGNSRSTVEVLEEVANRLTTHMPRR" XX SQ Sequence 2611 BP; 658 A; 578 C; 612 G; 763 T; 0 other; accggatggc cgcgctttgg tgacactgtc accctcgcta ttaatttgaa ttaaagcgcg 60 tccgcttttg ttctgaccaa tcatattgcg cctgacgcgc ctaaatattt taaacaactt 120 gggccctaag ttgttgtctg ggctatatat gaaaagcgta ttgggccata gtggttaacc 180 caatatgtct aagcgggatg ccccatggcg ttcaatggcg ggaatgtcaa aggtccgccg 240 tactcttaat tattctcctc gtgcaggttt gggccctaag ttcaacaagg ccgctgagtg 300 ggtgaacagg cccatgtaca agaagcccag gatatatcgg acgctaagga cctcagatgt 360 gccgagaggc tgtgaaggcc cgtgcaaggt ccagtcatat gaacagcgcc atgatatctc 420 acatgtcggg aaggtcatgt gtatatccga tgtcacacgt ggtaatggca tcacccatcg 480 tgtgggcaag cgtttctgtg ttaagtctgt gtatatatta gggaagatat ggatggatga 540 gaacatcaag ctcaagaacc acacgaacag cgttatgttc tggttggtca gggatcgtag 600 accgtatggc actcctatgg atttcggtca ggtattcaac atgtatgaca acgagcctag 660 cactgcaacc atcaagaatg atctacgtga tcgttatcag gtcatgcaca ggttctatgg 720 caaggtcaca ggtggtcaat atgccagtaa cgagcaggca ttggtcaggc gattctggaa 780 ggtcaacaat catgtggtat acaatcatca agaggctggc aaatatgaga atcatacgga 840 gaatgcccta ttattgtaca tggcatgtac tcatgcctct aaccccgtgt atgctacatt 900 gaaaattcgg atctattttt atgattcgat aacaaattaa taaaatttaa attttatttc 960 atgatcttct agtacatatc ttacatacga tttgtctgtt gcaaactgaa cagctctaat 1020 tacattgtta attgaaatca cgcctaactc gtctaaatac atattaacta gttgtctaaa 1080 cctaactaaa taagttgacc cagaagctgt catcgatgtc gtccagactt ggaagttcaa 1140 gtaagctttg tggagaccca acactctcct caggttgtgg ttgaaccgta tttgtatgtg 1200 atacaccctg gttctggtgt ataacaggtc ttctactctg tatatcatga aatagagggg 1260 attttctatc ttccagatat acacgccatt ctctgcctga tgtgcagtga tgagttcccc 1320 tgtgcgtgaa tccatgtcct gtacagtcta tgtggaagta gatggagcac ccgcactcta 1380 gatcaatcct gcgtctcctg atggccctcc tcttggcttg tttgtgtgcc ttcttgatag 1440 aggggggctg tgagggtgat gaagatagca ttcttgagag tccagttcct gagacctgtg 1500 ttttcctctt tgttcaggaa atctttatag ctggcaccct caccaggatt gcaaagcacg 1560 attgctggga tcccgccttt aatttgaact ggcttcccgt acttgcaatt tgattgccag 1620 tccttctggg cccccagaag ttctttccag tgctttagct ttagatattg cggtgcgacg 1680 tcatcaatga tgttatactc cacatcgttt gagaagacct ttgaattgaa gtccaggtgg 1740 ccactgagat agttatgtgg gcctaaggca cgagcccaca tcgtcttccc tgttctcgag 1800 tcaccctcta ctatgagact tactggtctc tccggccgcg cagcggcacc tctcccaaaa 1860 taactgtccg accattcttg catctcgtcg ggaacgttag tgaaagagga gaggggaaac 1920 ggaggagacc atggatccgg agccttcatg aaaatccgat gagcattggc aaccaaattg 1980 tgatgttgaa ggaagaaatg ttgaggctgc tcctccttga ttatttgaag agcctcttca 2040 gcagaagagg cattcaacgc cttggcatat gtgtcgttag ccgattggca acctcctcta 2100 gcacttctac cgtcgatctg gaattccccc cattccagtg tgtctccgcc cttgttgaca 2160 taggacttga cgtcggagct cgacctagct ccctgtatgt ttggatggaa atgtgttgac 2220 cgagttgtgg gtaccaggtc gaagaatctg ttattcgtgc atgcatattt cccttcgaac 2280 tgtataagca cgtggagatg aggcttccca ttttgatgaa actctctgca gatcttgata 2340 aacttcttgt ttactggagt tgaaaggttt tgcagttgag ataatgcttc ctctttgcta 2400 agtgaacagt ctggataagt taggaaatag tttttggcat ttattttaaa acgtttaact 2460 gatggcattt ttgtaataat agggtgttcc ccaattgagc tcctctcaaa cttgctcatg 2520 caattgggga aacggggtac aatatatact agaaccctca atagaacttt agatctcgtt 2580 cgcacacgtg gcggccatcc gctataatat t 2611 //