ID FJ593629; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC FJ593629; XX DT 02-JUL-2010 (Rel. 105, Created) DT 08-MAY-2018 (Rel. 136, Last updated, Version 2) XX DE Papaya leaf curl virus segment DNA-A, complete sequence. XX KW . XX OS Papaya leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2759 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Isolate of Croton yellow vein mosaic virus causing leaf curl disease of RT radish in India"; RL Unpublished. XX RN [2] RP 1-2759 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (23-DEC-2008) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; c35faadfba21a80da00d591e97ae6af7. DR EuropePMC; PMC3305473; 22339942. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Papaya leaf curl virus" FT /segment="DNA-A" FT /host="radish" FT /isolate="Pataudi" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="S. Chakraborty" FT /db_xref="taxon:53260" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="may help in viral movement and suppressor of RNAi" FT /db_xref="GOA:D8L222" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D8L222" FT /protein_id="ACU00720.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTHVP FT EAQDVQDVQKPRCP" FT gene complement(298..615) FT /gene="AC5" FT CDS complement(298..615) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D8L223" FT /protein_id="ACU00725.1" FT /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFASLRDIWASV FT HPVHPGLPVHGSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNDYICWTLRHN FT F" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="required for encapsidation and vector trasmission" FT /db_xref="GOA:D8L224" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D8L224" FT /protein_id="ACU00719.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1080..1484) FT /gene="AC3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replication enhancer protein; enhances geminivirus FT replication" FT /db_xref="GOA:D8L225" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D8L225" FT /protein_id="ACU00723.1" FT /translation="MDSRTGEPITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMKEDI FT ITVQIQFNHNLRKVLGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINT FT VIRSVDHVLWNVLQHIVYVEQSSSIKFNLY" FT gene complement(1225..1629) FT /gene="AC2" FT CDS complement(1225..1629) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="trans-activator protein; suppressor of PTGS" FT /db_xref="GOA:D8L226" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D8L226" FT /protein_id="ACU00722.1" FT /translation="MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHDHGFTHRGTHHCSSSREWRVYLGNSKSPVFQDNRTPQQAIPNEGRHHHRSDTVQSQP FT EESIGDTQMFPSLPNLDDLTASDWSFLKGL" FT gene complement(1532..2617) FT /gene="AC1" FT CDS complement(1532..2617) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; essential for viral replication" FT /db_xref="GOA:D8L227" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D8L227" FT /protein_id="ACU00721.1" FT /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPMEVYVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWTLKNATFITLEGPL FT YSGSNQSAAQDSQERDQASTS" FT gene complement(2203..2460) FT /gene="AC4" FT CDS complement(2203..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="required for symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D8L228" FT /protein_id="ACU00724.1" FT /translation="MGLCISMPSSSSKVKPSSETPDISMSLTLITPPNSTQTSREQSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2759 BP; 761 A; 547 C; 633 G; 818 T; 0 other; accggatggc cgcgaaaaaa aaaaaagtgg gccccatggc gcactaactg acaaagactt 60 ctccaccaat gagaagagct cctcaaagct taattgtttt gtggtcccct atttaaactt 120 cgccaccaag tagtgcattg cgcactatgt gggatccatt agtaaacgag tttcccgaaa 180 ccgtacacgg gtttagatgt atgttagcag ttaaatattt gcagttagta gagaagactt 240 atgctcctga cacattgggg cacgatttaa ttagggattt aatttcagta attagggcta 300 gaaattatgt cgaagcgtcc agcagatata atcatttcca cgcccgcttc gaaggtacgc 360 cgtcgtctca acttcgacag cccatatgtg aaccgtgctg ctgcccccat tgtccgcgtc 420 accaaagcaa aggcatgggc gaacagaccc atgtaccgga agcccaggat gtacaggatg 480 tacagaagcc cagatgtccc taagggatgc gaaggcccat gtaaggtgca gtcttttgat 540 gcgaagaatg atattggtca catgggtaag gttatttgtc tttctgatgt tactaggggt 600 attgggctga cccatcgagt agggaaacgt ttctgcgtga agtcattgta ttttgttggc 660 aaaatatgga tggacgagaa catcaagacc aagaaccata cgaatactgt tatgttttgg 720 atcgttagag ataggcgtcc ttcaggaacc ccaaatgatt ttcagcaagt gttcaatgtt 780 tatgataatg agccctctac ggctactgtg aagaacgacc agcgtgatcg ttttcaggtg 840 ttgaggaggt ttcaagcaac cgttacaggt ggtcaatatg ctgctaagga acaagctata 900 attaggaaat tctatcgtgt taacaattat gtggtgtata atcaccagga agctgggaag 960 tatgaaaatc acactgagaa tgctttgttg ttgtatatgg catgtactca tgcctctaac 1020 cctgtgtatg ctactttgaa agttaggagt tacttctacg attctgtaac aaattaatat 1080 taataaagat tgaattttat tgatgaagat tgttctacat atacaatgtg ttgtaataca 1140 ttccataata catgatcaac tgatctaatt acagtattaa tactgataac tcctaaatta 1200 tttaagtact taagaacttg ggtcttaaag acccttaaga aacgaccagt cggaggctgt 1260 gaggtcatcc agattcggaa ggctaggaaa catttgtgta tccccaatac tttcctcagg 1320 ttgtgattga actgtatctg aacggtgatg atgtcttcct tcattaggaa tggcctgttg 1380 tggtgttctg ttatcttgaa atacagggga ttttgaattt cccagataaa cacgccattc 1440 tctgcttgag ctgcagtgat gggttcccct gtgcgtgaat ccatggtcgt ggcaagctat 1500 ggatatgaag tatgaacacc cacacggtag atcaactcgt cgacgcctga tccctttctt 1560 ggctatcttg tgctgcactt tgattggaac ctgagtagag tgggccttcg agggtgatga 1620 aggtcgcatt ctttaaagtc caattcttga gtgcagcatt tttctcttca tccaagaact 1680 ctttataact tgaatttggt cctggattgc agaggaagat agttggaatt ccacctttaa 1740 tttgaactgg ctttccgtac tttgtatttg attgccagtc cctttgggcc cccatgaact 1800 ccttaaagtg ctttaggtag tgggggtcta cgtcatcaat gacgttatac caggcatcat 1860 tattgtagac ctttgggcta aggtctagat gaccacacaa atagttatgt ggtccaagtg 1920 atctggccca catcgtcttg cccgttctac tatcaccctc tatcactata cttatgggcc 1980 tcaaaggccg cgcagcggca ctgacaacgt tctcggcagc ccattcctca agttcttgtg 2040 gaacttggtc aaaagaagaa gaagaaaaag gagaaacata aacctccatc ggaggtgtaa 2100 aaatcctatc taaattacat tttaaattat gatattgaaa aataaaatct ttagggagtt 2160 tttccctaat tattgctaaa gctgcgtcag ctgaacctgc atttagggcc tctgctgctg 2220 catcattagc tgtctgttga cctcctcgag cagatcttcc atcgatctga aactgacccc 2280 agtcgatgta atcactgtcc ttctcgatgt aggacttgac atcagagctg gactttgctc 2340 cctggaagtt tgggtggaat tgggaggagt tattagggtg agtgacatcg aaatgtctgg 2400 ggtttctgaa cttggcttta cctttgaact ggatgagggc atggatatgc agagacccat 2460 cttggtgttt ttcttgtgcc actctgataa ataatttatc agatgggcaa tttattgact 2520 gaagaatctc gagcatttgc tctttgggta ttgggcattt tggataagtg aggaagatat 2580 ttttggcatt aacacaaaaa gagttaatac gaggcatatt gaattgggga cactcaaaac 2640 tctgaggaat gggggactcg ggggacgcat ttatatggtg tccccaaatg gctttttcgt 2700 aattacgaaa gaaaattcaa aattctcacg ctcccaaaag cggccatccg tataatatt 2759 //