ID FJ561303; SV 1; linear; genomic RNA; STD; VRL; 2903 BP. XX AC FJ561303; XX DT 01-DEC-2009 (Rel. 103, Created) DT 01-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Tobacco streak virus isolate okra segment RNA2, complete sequence. XX KW . XX OS Tobacco streak virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2903 RA Usha Rani T., Laxmi Devi V., Jalali S., Krishna Reddy M.; RT "Molecular characterization and complete nucleotide sequence of RNA2 of RT Tobacco streak virus infecting okra"; RL Unpublished. XX RN [2] RP 1-2903 RA Usha Rani T., Laxmi Devi V., Jalali S., Krishna Reddy M.; RT ; RL Submitted (18-DEC-2008) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; 553dd1e3052f619ecfa3e3e4fefe7a82. DR EuropePMC; PMC4223465; 25377714. XX FH Key Location/Qualifiers FH FT source 1..2903 FT /organism="Tobacco streak virus" FT /segment="RNA2" FT /host="okra" FT /lab_host="Abelmoschus esculentus (okra)" FT /isolate="okra" FT /mol_type="genomic RNA" FT /country="India:Coimbatur, Tamilnadu" FT /isolation_source="infected leaf" FT /collected_by="Dr. M. Krishna Reddy" FT /collection_date="Jul-2006" FT /note="serogroup: Group I" FT /db_xref="taxon:12317" FT 5'UTR 1..41 FT CDS 42..2420 FT /codon_start=1 FT /product="2a protein" FT /db_xref="GOA:D2DJ52" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2DJ52" FT /protein_id="ACT67448.1" FT /translation="MDSVIKNLIVYHLSRRIDVGSSFGIEPADFIDWVKLFFLKFIVEH FT TARFIAVADIHTTMLLVLGTDDPDYEEKDTSLISTEVDPFYLPYDDLDVDYTSLRVFGD FT EYQSCSDRDDLTEFVSNISHIPEGTSWGSESDTSFVEHLEEIQGIPTKMDLSDRVVDDI FT PFDDDGKVIDEVWVDAEPSRAPEVSCDADVRACGFRFIPTFEELSRPKWTPKVSQVKPD FT PSVIQSAVDELFPHHHSVDDRFFQEWVETHDIDLEVTSCDLDLSVFNDWTKGVDTRLVP FT HMSVGGLSHRVPTQREALLAIKKRNMNVPELQSSFDHDDVLNRCVTRFITHVVDKTRLS FT KLNPISGEELYYFNQYLENKNPPLSEYKGPVPLVALDKYMHMIKTTLKPVEEDSLHIER FT PIPATITYHKKGVVMMTSPYFLCAMVRLLYVLKSKFVVPTGKYHQIFQMNPELLKHSKE FT FKEIDFSKFDKSQGRLHHDVQFRLFMALGIPEHFVTTWFNSHERSHIRDRDCGIGFSVD FT YQRRTGDACTYPGNTLVTLSVLSYVYDLSDPNVLFVAASGDDSLIGSRKPLPREKEDLC FT VSLFNFETKFPHNQPFMCSKFLLVVECDDGSEEVLAVPNPLKLLQKFGPKNLQVTVLDD FT YYQSLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANRMKFVRR FT TINLESSKVCIRDDVYSDLVSHFDSRVSRCDDSEGVRTPTSDDRSSSEHASVIYGEARG FT RIKPRRNRKSEGRSDRRDQSSGVETGRAKPTRKGRVKLH" FT misc_feature 1416..1727 FT /note="Region: polymerase signature" FT CDS 2164..2763 FT /codon_start=1 FT /product="2b protein" FT /db_xref="UniProtKB/TrEMBL:D2DJ48" FT /protein_id="ACT67449.1" FT /translation="MFIPILFLTLTLASADVMTPKGFEHQPPTTDRRPSMPPLSTEKPE FT VELNPGETVKVKADQTDVINPVELKLEERSPPGKAGSNCIDCAISNLPETAFSVKVPRL FT GINFEVSDFPSSRLIFATLARKVKSIPFIESLSFPSDIQRMQLRALGDVEVLVSIPKLG FT WKQVLKLSDVVSGFEFPKIPSIAPKVGSCVGDCLDS" FT 3'UTR 2763..2903 XX SQ Sequence 2903 BP; 751 A; 594 C; 695 G; 863 T; 0 other; gtgtattact gacacatatc tgggtcagaa cctcctgaaa tatggattcc gttataaaga 60 acctcatcgt gtatcacttg agtagacgaa ttgatgttgg ctcatcattc ggtatcgaac 120 cggctgattt tattgattgg gttaaacttt tcttcttgaa gtttatagtc gaacatacag 180 ccaggttcat tgccgtcgct gacatacaca cgaccatgtt attggtgtta ggtactgatg 240 atcccgatta tgaggagaaa gacacttcgt tgatttcgac ggaggttgat cctttctacc 300 ttccatacga cgatcttgac gtggactaca cctctttacg tgtgtttggt gacgagtacc 360 aatcctgttc cgatcgagac gatttgaccg agttcgtgtc gaacatctca cacatccccg 420 aaggtacttc ttggggtagt gagtctgaca cgtctttcgt tgagcatctt gaagaaattc 480 aaggtatacc gacgaaaatg gacttgagcg atcgtgtcgt cgatgacatt ccttttgatg 540 acgatggtaa agtcatcgat gaggtatggg ttgatgccga gccctcaagg gctccggaag 600 tttcttgtga tgccgacgtg cgggcatgtg ggtttcgttt cataccgacc tttgaagaat 660 taagtcgtcc gaaatggaca ccgaaggtga gtcaggtcaa acctgaccct tctgtgattc 720 agtcagccgt cgatgaactt tttccccacc atcattctgt cgatgacagg ttcttccaag 780 aatgggttga aactcatgat attgacttgg aagtcacgag ttgtgatcta gatttgtccg 840 tgtttaatga ctggacgaaa ggggtcgaca ctcggttggt accgcacatg agtgttggtg 900 gattatccca cagggtccca acgcagcgag aagctctgtt ggcgattaag aagcggaaca 960 tgaatgttcc ggaacttcaa agcagtttcg atcacgacga tgtattgaac cgatgtgtta 1020 ctagattcat aacacatgtc gttgataaga ctcgattgtc gaaactgaac ccgatatctg 1080 gagaggagtt atattacttc aaccagtatt tggaaaacaa aaatccccct ttaagtgaat 1140 acaaggggcc ggtaccattg gtggctttag ataaatatat gcacatgata aagaccacct 1200 tgaagccagt ggaagaagat agtctccaca tagaacgacc cattcccgct acgattacgt 1260 atcataagaa aggggttgtc atgatgacat ccccatattt cttatgtgcg atggtgaggt 1320 tgctctatgt gttgaaatct aaatttgtcg tccccactgg aaaataccac cagatattcc 1380 agatgaatcc cgagttgttg aaacactcga aggagtttaa ggaaatcgat ttttcgaaat 1440 tcgataaatc acaaggtcga ttgcaccatg atgtgcaatt cagacttttc atggctcttg 1500 ggataccaga gcactttgtg acaacgtggt tcaattccca cgagaggagt cacataagag 1560 atcgtgattg tggtatcgga ttttccgttg attatcaacg aagaactggt gatgcatgca 1620 cttatccggg aaacacatta gttactttga gcgttctcag ttatgtgtat gatttgtccg 1680 atccaaacgt attgtttgtt gccgccagtg gcgatgacag tctaattgga tctagaaaac 1740 ccttaccgcg agaaaaagag gatttgtgcg tgtccctttt taattttgaa acgaagtttc 1800 ctcacaacca accctttatg tgttcgaagt ttttgttggt tgtagagtgc gatgatgggt 1860 cggaagaagt tttggcagtt cccaatcctc tgaaacttct ccaaaaattc ggtcccaaaa 1920 accttcaagt caccgtgttg gatgattatt atcaaagctt gtgtgatata ttgtgggttt 1980 ttaatgatgc cgacgtatgt cgaagaaccg ctgaattagc ggaatacagg cgtttcaagg 2040 gtaccaagaa atgcttgttt ctggagtctg ctttgttgag tttacctagt ttggtagcga 2100 atagaatgaa attcgttcga agaactatca acttagagag ttctaaagtt tgtattcgtg 2160 acgatgttta ttccgatctt gtttctcact ttgactctcg cgtcagcaga tgtgatgact 2220 ccgaaggggt tcgaacacca acctccgacg acagatcgtc gtccgagcat gcctccgtta 2280 tctacggaga agcccgaggt agaattaaac cccggcgaaa ccgtaaaagt gaaggccgat 2340 cagaccgacg tgatcaatcc agtggagttg aaactggaag agcgaagccc acccggaaag 2400 gcagggtcaa attgcattga ttgcgctatt tccaacttgc cagagactgc gttctctgtc 2460 aaggttccga ggttgggtat taacttcgag gtgtctgatt ttccgtcttc tagattaata 2520 tttgccacgt tagctcgtaa ggtgaagtct attcccttta ttgaatcgct gagttttccc 2580 agcgacattc aaaggatgca gcttcgcgct ttaggtgacg tagaagtcct cgtctctatt 2640 ccaaaattgg gttggaaaca agttttgaaa ttgtctgacg tggtttccgg gtttgaattc 2700 ccgaagatcc catccatagc tcccaaagtg gggtcttgtg ttggtgattg tttggattct 2760 tgatggatcc ttttcctctc atggagagat gccgcttttg cgatgtttgc cagtggatag 2820 gcgggtgtga tgcttctcta tgttttctac acactattcc agttatatct aatgatataa 2880 ctgatgcctc caaatggaga tgc 2903 //