ID   FJ561301; SV 1; linear; genomic RNA; STD; VRL; 2213 BP.
XX
AC   FJ561301;
XX
DT   01-DEC-2009 (Rel. 103, Created)
DT   01-DEC-2009 (Rel. 103, Last updated, Version 1)
XX
DE   Tobacco streak virus isolate pumpkin segment RNA3, complete sequence.
XX
KW   .
XX
OS   Tobacco streak virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus.
XX
RN   [1]
RP   1-2213
RA   Usha Rani T., Laxmi Devi V., Jalali S., Krishna Reddy M.;
RT   "Molecular characterization and complete nucleotide sequence of RNA3 of
RT   Tobacco streak virus infecting pumpkin in India";
RL   Unpublished.
XX
RN   [2]
RP   1-2213
RA   Usha Rani T., Laxmi Devi V., Jalali S., Krishna Reddy M.;
RT   ;
RL   Submitted (18-DEC-2008) to the INSDC.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
DR   MD5; 878ee92405aa501b9940bc2255387d1f.
DR   EuropePMC; PMC4223465; 25377714.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2213
FT                   /organism="Tobacco streak virus"
FT                   /segment="RNA3"
FT                   /host="pumpkin"
FT                   /lab_host="Cucurbita pepo (pumpkin)"
FT                   /isolate="pumpkin"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Bangalore"
FT                   /isolation_source="infected leaf"
FT                   /collected_by="Dr. M. Krishna Reddy"
FT                   /collection_date="Jan-2008"
FT                   /note="serogroup: Group I"
FT                   /db_xref="taxon:12317"
FT   5'UTR           1..211
FT   CDS             212..1084
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:D2DJ49"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:D2DJ49"
FT                   /protein_id="ACT67445.1"
FT                   /translation="MALVPTMKALTFSADDETSLEKAITEALSGSVELNMGLRRCAAFP
FT                   AVNTGAFLCELTTKETKSFIGKFSDKVRGRTFVDHAVIHLLYLPVILKTTYAISELKLK
FT                   NLATGDELYGGTKVDLSKAFILTMTWPRSLFAEAVHAHRGLYLGGTVSCASSVPSNAKI
FT                   GMWYPMWSEKVSNKQLYQNTVNIHSTEALETFTRTMISSDREMRSLLRSRASIDIAART
FT                   PEKPVICSERVSLLDQHTQGVDFTVNEIDADKDDDAGTSVLGPKMVPIEQVPSVKLPSS
FT                   KAGRNLLSA"
FT   CDS             1208..1924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:D2DJ50"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="InterPro:IPR016405"
FT                   /db_xref="UniProtKB/TrEMBL:D2DJ50"
FT                   /protein_id="ACT67446.1"
FT                   /translation="MNTLIQGPDHPSNAMSSRTNNRFNNNSRCPTCFDELDAVARGCPA
FT                   HAPANTVSRRQRRNAARAAAFRNANARMTAPIPVVPVSRPQAKTSLKLPNNQVWVTRKA
FT                   SECLAKTIDTNDAIPFKTIVDGIPEINSETKFYRLLIGFVAVSDGTFGMVDGVTGDVIP
FT                   DPPVVGRLGFKKNTYRSRDFDLGGKLLNQLDDRAIVWCLDERRRDAKRVQLAGYWIAIS
FT                   KPAPLMPPEDFLVNQD"
FT   3'UTR           1925..2213
XX
SQ   Sequence 2213 BP; 582 A; 496 C; 550 G; 585 T; 0 other;
     gtattctccg agctttagat accacttgca atttgattcc gaatcggacg atttccaact        60
     ttgaattcct acaagttgag accattggtc gatcaaattg cttgtcattc gaatacaact       120
     gatatcacag aggatcttct gggtaaagtt atcccgataa ctcagttgct gttcgggttg       180
     tgtatatcag gatccgccac tgaaaaggaa gatggcgtta gtaccaacga tgaaagcttt       240
     gacattctca gcagatgatg agacatctct ggagaaggct ataacagaag cactatctgg       300
     ttccgttgag ttaaacatgg gtttacgtcg ttgcgcagct ttccctgctg ttaacacagg       360
     tgccttcctg tgtgagttga ctaccaaaga gacgaaatcc tttatcggta aattttccga       420
     taaagttaga ggacgtacct ttgtagatca cgcggtgata catttgttgt atttacctgt       480
     gatattaaaa accacttatg ccatctcgga gcttaaattg aaaaatttag ctacaggtga       540
     tgaattgtat ggtggtacta aagtcgacct gagcaaagcc ttcatattaa ctatgacttg       600
     gcctcgctct ctatttgctg aagcagttca tgcccacaga ggattgtacc tggggggaac       660
     tgtttcctgc gcttcctcag tgccttcaaa cgccaaaatt gggatgtggt accccatgtg       720
     gtcggaaaag gtttcgaata aacaactgta tcaaaataca gttaatattc atagtaccga       780
     agcacttgag acgtttacgc ggacgatgat cagcagtgac agggaaatga gatcgttatt       840
     gagaagtcgt gcctcaattg atattgctgc aagaacacct gaaaaacccg tgatatgctc       900
     ggaacgagtt agtctgctgg atcagcacac tcagggagtc gacttcactg tgaatgaaat       960
     cgatgccgat aaggacgatg acgcaggaac gtcagtctta ggaccgaaga tggtcccgat      1020
     tgaacaagta ccgtcggtca agcttccgtc gtcgaaagca ggtaggaacc tgctttcagc      1080
     ctgactgttg ggttgtgtaa gacatggggg gctttgagta aaggggctag tcccccagtg      1140
     tgagacgagt attaagttga tgaattctag agatagataa gtcgcttctc ggacttacct      1200
     gagatgtatg aatactttga tccaaggtcc agaccatcca tccaacgcca tgtcttcccg      1260
     tactaacaac cgctttaaca acaacagcag atgcccaact tgtttcgacg agttggatgc      1320
     agtagcgagg ggttgccccg ctcacgctcc cgcgaacact gtttcgcgac gtcagcggcg      1380
     aaatgccgct agagctgccg cgtttaggaa cgcgaatgct cgaatgaccg caccaattcc      1440
     tgtggtgccg gtttcccgcc ctcaagcgaa gacatcgttg aagctaccca acaatcaagt      1500
     ttgggtaact cgcaaagcga gtgaatgttt ggcaaagacc attgatacca acgatgccat      1560
     ccccttcaag accatagtcg atgggattcc cgaaatcaat tcggagacga agttttaccg      1620
     tctcctaatt ggttttgtcg ccgtctctga tgggacgttt gggatggttg atggagtgac      1680
     gggagatgtc attccggacc caccggtcgt tggacggttg ggtttcaaga agaataccta      1740
     ccgcagccga gattttgatc tcggcggtaa gcttctcaac caactagacg atagagctat      1800
     cgtctggtgc ctcgacgaaa ggcgtcgaga tgccaagagg gttcagctgg cgggatattg      1860
     gattgccata tccaaaccag ctcccttgat gccaccagaa gatttcctgg tgaatcaaga      1920
     ttgactagat ggtcacctcg gtaggaccga gttgccgtac attagaggta attcctgtgt      1980
     acgatgtggg tttacaccac cacgtattgt agatcaatac gtttggtcgt gtaacttttg      2040
     ttcctatgaa caacatgcat agctgccgcg tatccgggcg tgagtctatg acccatgcga      2100
     gcattccgaa tcggacgatt tccgtggaaa accacgagac cttaaggtcg atgcttgcgt      2160
     ttggtgccag tagtatatat atatactact gatgcctcct ttataggaga tgc             2213
//