ID FJ561299; SV 1; linear; genomic RNA; STD; VRL; 3523 BP. XX AC FJ561299; XX DT 01-DEC-2009 (Rel. 103, Created) DT 01-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Tobacco streak virus isolate pumpkin segment RNA1, complete sequence. XX KW . XX OS Tobacco streak virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3523 RA Usha Rani T., Laxmi Devi V., Jalali S., Krishna Reddy M.; RT "Molecular characterization and complete nucleotide sequence of RNA1 of RT Tobacco streak virus infecting pumpkin"; RL Unpublished. XX RN [2] RP 1-3523 RA Usha Rani T., Laxmi Devi V., Jalali S., Krishna Reddy M.; RT ; RL Submitted (17-DEC-2008) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; 37bde3938586cbcd41923b70cce2bc12. DR EuropePMC; PMC4223465; 25377714. XX FH Key Location/Qualifiers FH FT source 1..3523 FT /organism="Tobacco streak virus" FT /segment="RNA1" FT /host="pumpkin" FT /lab_host="Cucurbita pepo (pumpkin)" FT /isolate="pumpkin" FT /mol_type="genomic RNA" FT /country="India:Bangalore" FT /isolation_source="infected leaf" FT /collected_by="Dr. M. Krishna Reddy" FT /collection_date="Jan-2008" FT /note="serogroup: Group I" FT /db_xref="taxon:12317" FT 5'UTR 1..37 FT CDS 38..3316 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:D2DJ46" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:D2DJ46" FT /protein_id="ACT67442.1" FT /translation="MDSRSLPTVSDVVVPALNVDSLVRDYVSNVRADDSNNVSRFLGEV FT ALREIKSQVDTSNGDFQKLNVGFRLTPDEKNALKANFPGLEIAFKDSCHSSHSFAAAHR FT VCETLEIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLA FT ASVENRHRKLPVNFCCHKFEECDVKAPFAMAVHSINDIPISTVVTHCVRRGVRKLIASV FT LMDPLMMLYDKGHIPLLNVYWEKEDIEEGKTLIHFHFVDAPGLNYSHDFNVLSQYMITN FT QVIVNNTYSFRVERTACLSGVYIVEMTLSMTDGCSLAYLKPMRDVSCAWLSSLRKKVFV FT KLAVPVSAEWYTEQFEVRYALMDESLVRYVSEAAFRQFSKTKDPETLVQYIATMLSSSS FT NHVVINGITMRSGSPINFDEYVPLAVTFYVMAAWRYKMIAPGIDAVKTRTEKNIDALDE FT KGLIKEDFNLVNEFLEEAGLVGPNLPRLTDVIKSAGLRSFGKKTIEKTRDDVSLIKPRN FT LLREVIYTVRSIFGLTILDSDYNLVSGIPSHMKATHVWNVFVGNLAFPSSLNVNECVNE FT LLANHIEMMEETVKEETRQQAFKDARDRALMTIAKAIEKDQTVKDGLLPILDLCKITEE FT LNAASNSLNLTPEAIERTDSRLARASGSDVNPYADSIKEAIHYFNEVEVANTRNLRSLG FT TYLGWSIPKSRQTYDALKGRNDSVRVYVPYENKWYPSAPSGQYERAMTVDGYVSLQWNS FT EAITDKCRKDLVKYHVLVVDDSCIFCSGQRMIPALEAALKLVPTFKITIVDGVAGCGKT FT THLKKIARIDSNAAGSPDLVLTSNRSSSDELKEVIDCPDVMKYRIRTVDSYLMLKSWFS FT AERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQIPFISRLPEFRMEHHRIVGKID FT VQTTTYRCPRDATACLKKFFYKNKTVKSASVIERSLELNPIQSVIQIQPERDVLYMTHT FT RADKEALLRIPGMPKDRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGSEGPCHNLVA FT ISRHRKSFQYCTVAPHDNDDQIVKCINFAKSLSSGDLDGVRILT" FT 3'UTR 3317..3523 XX SQ Sequence 3523 BP; 979 A; 722 C; 830 G; 992 T; 0 other; gtattactgt tttgtatccg aaacagaacc tccagaaatg gattctcgtt cattacccac 60 cgtgagtgac gttgttgttc cggctttgaa cgttgacagt ctcgtgcgag actatgtcag 120 caatgtgaga gccgatgata gcaataacgt cagtagattc ctcggtgaag tggccttgag 180 agaaattaaa tctcaagttg acaccagcaa tggtgatttc cagaagttaa acgtcggttt 240 tcgtttgact cctgatgaga agaacgcttt gaaggcgaat tttcctggtc ttgaaattgc 300 gtttaaagac tcgtgtcatt cgtctcatag ttttgccgca gcacatagag tctgcgagac 360 cctagagata tacaatcggt ttaaaacaaa aaccgagcgc attatcgacc ttggtggcaa 420 ttatgtcacc catgcgaaac aaggtcgatc caatgtgcat tcctgctgtc ccatccttga 480 tgtgcgagac ggtgccaggc ataccgatcg ttatatatct ctagctgcct ctgttgagaa 540 tcgtcacaga aagttaccag taaatttctg ttgccataag ttcgaagaat gtgatgtcaa 600 agcaccgttt gctatggcag tgcattccat caatgacatt cctatttcaa cggttgtaac 660 acactgcgtt aggcgcggtg tgcgaaagtt gatagcttct gtcctgatgg atccgcttat 720 gatgctttat gacaaagggc atataccctt actcaacgtt tattgggaaa aggaagacat 780 tgaagaaggg aaaaccctga ttcatttcca ttttgttgac gcccccggat taaactattc 840 acacgatttt aatgtactgt cccaatacat gatcacgaat caggttattg ttaataatac 900 ctactctttt agggtagaga ggacagcctg tttatcaggt gtatatatcg tggagatgac 960 tctgtctatg acagatggtt gttctttagc ttatttgaag cccatgcgtg atgtatcttg 1020 cgcgtggttg tcaagcctga ggaagaaagt tttcgtcaaa ttagccgtac ccgtaagtgc 1080 cgaatggtat actgaacaat tcgaggttag gtacgcgttg atggacgaat ctttagttcg 1140 ctatgtttcc gaagctgcat ttcgacagtt ttcgaagact aaagaccctg aaacactggt 1200 tcagtacata gcaactatgt tatcttcctc ttcgaatcat gtggtcataa acgggataac 1260 aatgcgaagt ggtagtccca tcaatttcga tgagtacgtt ccgcttgctg tcacgtttta 1320 tgttatggcc gcatggcgtt acaaaatgat tgcccctggt atcgatgccg taaaaactcg 1380 taccgagaaa aacattgacg ctctcgatga gaaaggtctt atcaaggaag acttcaatct 1440 cgtcaatgaa tttctcgaag aagctgggtt ggttggaccc aatttgcccc gtctcacgga 1500 tgtcattaaa agcgcgggac tccgaagttt cgggaagaaa acgatcgaga aaaccaggga 1560 tgatgtttct ttaataaaac cgagaaactt gttgcgtgaa gtgatttaca cggtccgaag 1620 tatcttcggg ttaacgatcc tagactcaga ctacaattta gtgtcaggta ttccctccca 1680 catgaaggca acccatgtgt ggaatgtctt tgtcgggaat ctcgctttcc catccagtct 1740 caacgtcaat gaatgtgtta acgagttgct tgctaatcac atagaaatga tggaagagac 1800 tgtgaaggaa gaaacacgtc aacaagcttt caaagatgcc agagatcgag ctctgatgac 1860 gatagcgaaa gctatcgaaa aggatcagac cgttaaggat ggtctgttac caattctcga 1920 cttatgtaaa ataacggaag aattgaatgc agcttcgaat tccttgaact tgactccaga 1980 agctatagaa agaacagact cgcgattggc gagagcatcg ggaagtgacg ttaatcccta 2040 cgccgattcc ataaaggaag ccatacacta cttcaatgaa gttgaggtgg ctaacacacg 2100 gaatttgcgc agtttaggaa cttatcttgg atggtccatt cccaagagta ggcaaaccta 2160 cgatgctttg aaaggcagaa atgattctgt cagggtgtac gtaccttatg aaaataagtg 2220 gtacccctct gcaccctccg gtcagtacga aagagctatg accgttgatg ggtatgtgtc 2280 gcttcaatgg aattctgagg cgattaccga caaatgcagg aaagatttgg tgaaatatca 2340 tgtcctcgtt gtcgatgatt cttgcatttt ctgttcaggt cagagaatga ttccagcttt 2400 agaagccgcc ttaaaactag tcccaacctt taagatcacg attgttgatg gtgtcgcggg 2460 ttgtggtaag actacacatc tgaagaagat cgcgcgtatt gattcaaacg ctgcgggtag 2520 tccagatttg gtgctgacga gtaatcgcag ttcatccgat gagttgaaag aagttataga 2580 ttgtccagat gtgatgaagt accgcatcag gactgtcgat agctatctaa tgctcaaatc 2640 ctggttttcg gctgagcgac ttttgtttga tgaatgcttc ttgacacatg cgggttgtgt 2700 ttatgccgca gccactctgg ctcaagtgaa ggaagtaatt gctttcggtg acaccgagca 2760 aatccccttc atatctaggt taccagagtt tcgcatggaa caccatagaa tcgttggaaa 2820 gattgatgtc cagacaacga cctacaggtg tccgagagat gccacagctt gtttgaaaaa 2880 attcttctac aaaaacaaga ctgtgaagtc ggcgagcgtc atcgagcgtt cgcttgagtt 2940 aaacccaata cagagtgtga ttcaaattca accagagcgt gatgttttgt acatgacaca 3000 cacgcgagca gataaagaag ccctcctgag aataccgggg atgccgaagg ataggattaa 3060 aactacccat gaagcccaag gtgaaacctg ggatcatgtg gtgatgttca gactttcgaa 3120 gactactaat ctgcttcatt ctgggaaagg atccgagggt ccttgtcaca atttggttgc 3180 catatctaga catcgtaaat catttcagta ctgtacggta gctcctcatg ataacgatga 3240 tcagatagtg aagtgtatca atttcgccaa atctctgagt tcgggagatt tggatggggt 3300 ccgaatttta acttgataca ttagtgtaca taattccatt attatgttgc cgcagggaac 3360 ctgcgatgtt ttggattctt gatggatcct tttcctctca tagagagatg ccgcttttgc 3420 gaagattgcc agtggatagg cgggtgtgat gcttctctaa cacacttcca ctgatgctgt 3480 ttatgtctaa tgacataaac gatgcctcct ttataggaga tgc 3523 //