ID FJ560944; SV 1; linear; genomic DNA; STD; VRL; 7961 BP. XX AC FJ560944; XX DT 25-MAY-2009 (Rel. 100, Created) DT 25-MAY-2009 (Rel. 100, Last updated, Version 1) XX DE Sweetpotato badnavirus B, complete genome. XX KW . XX OS Sweet potato badnavirus B OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7961 RX DOI; 10.1016/j.virol.2009.03.024. RX PUBMED; 19394993. RA Kreuze J.F., Perez A., Untiveros M., Quispe D., Fuentes S., Barker I., RA Simon R.; RT "Complete viral genome sequence and discovery of novel viruses by deep RT sequencing of small RNAs: a generic method for diagnosis, discovery and RT sequencing of viruses"; RL Virology 388(1):1-7(2009). XX RN [2] RP 1-7961 RA Kreuze J.F., Perez A.; RT ; RL Submitted (17-DEC-2008) to the INSDC. RL germplasm enhancement and crop improvement, International Potato Center RL (CIP), Avenida la Molina 1895, Lima Lima 12, Peru XX DR MD5; dd36f5c375393f8f2cb3022bc98f210c. DR EuropePMC; PMC2808878; 19850722. XX FH Key Location/Qualifiers FH FT source 1..7961 FT /organism="Sweet potato badnavirus B" FT /isolate="Huachano1" FT /mol_type="genomic DNA" FT /country="Peru" FT /isolation_source="sweet potato cv. Huachano" FT /db_xref="taxon:647294" FT CDS 703..1131 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1; conserved Badnavirus ORF" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:C4NFM7" FT /protein_id="ACN56748.1" FT /translation="MSERWEKSLQDWYDSRRSHLEYLDLETVSKPSLSQLAHNLSIVRD FT NNNLHTKVLLKRCYVLEEKLEEQSLLIKRLEKGLEALTEEFLSSRPLTAKQVKELVVEI FT AEQPKLVEQEALKLTEELKGKLDKVEGLIKDLKEFITG" FT CDS 1128..1589 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:C4NFM8" FT /protein_id="ACN56749.1" FT /translation="MNYKEIQDLPGFNRALTGTASLGAEGFTQPSGKTQSSLDTLIRQN FT NTLLFLTGTIEDRVQGIEEELVEIRKAIFXKGKDPDLSGVVSQLQQLTIKGKAPEPRGV FT LRVQQDPYLQIRRQINEENRGRTSYRSRSSRRSSEPPRRTPDPLRGSNP" FT CDS 1486..4998 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF3a; contains movement protein and coat protein FT domains" FT /db_xref="GOA:C4NFM9" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:C4NFM9" FT /protein_id="ACN56750.1" FT /translation="MRRTGAAPVTEAALQGGAQNLQEGRPILYEDQIRDYRRMAEARYQ FT LQRRVARVLGRPYRRTLERLMNPDQNLEDSLSRRARIVPAEVLYSSGEGPEHQRVYIHR FT SEEEITCVDGQQVDLPLITPESHQQLLRQQYRFIHIGAIQVRVQALHRAHQGTMVLVLN FT TDRRWNGDQALFGGVEGDLTEGAFMTYVIPNITMTVEDFCRSIMVEFQTRGYSEWVQGA FT NLLITRGMVGRLSNTPNVGFNYNISAVTDYLASRGVRTLPGRRYSTADLQGLRWNIRRP FT REVIPRHPTEMISRNLLGGGFSLSFREYQPITTEQRRAAQHPEEDSLEEEVLGVLNVEV FT LDWDGLDFPEPDPTLVNFEIPEPEPQQQHPEQVVEPVSDEILEFRREYSSIWDYGSEEE FT ALLEFVYYSTTPDDSNYWSYSNAYRELAAALEGNVSPNDVEGLEEVEGGTSTHFSGGGE FT VVPPSEPNCCIMCNKRGIPEDKILCQNCMDITDDSDDEREVERQERKRMQKQKEKRVTP FT STSKQTSQEEIIGAIEGDPWEEFEEMVERLHAQVTQQQPNPPADPQASNTRGQSAQSPY FT RPPEDTTMGQPSYAPARPTVETVSGPPSFRTDSRFLKRGTNNENWSLPPAQQQGGVLLT FT LPEQMGLLNDVFMRWETTTLNHMSLMNIQDTQEKVDYMENLLGETAKLAWIQWRTVYED FT EYKAIVAQAEGRMGTQNVISQVRRILTLSDPVQGSTAIQDQAYRDLERLQCHDVKDMVK FT FLNDYMRLATKTGRLYIGRELSDKLWIKMPGDLGTKIKEEFDKKHPGAEIAVIPRIFFA FT HKYLEDRCKEAAFTRSLKSVSFCKDIPIQGYYGSDKPKYTPRKAKTYKGKPHETHVRID FT RRKNLDRNSHCKCFICEEPGHYARDCPNQKRNIKRVMMFNQVNIPDNYDIVSVQENEED FT SDAIYSLTEGEEGDEIAFGIVQESVHMISHQVIGSWRAHIDMSEVQKVCRHQWQDHQEI FT EAPGEDTCLWCKHHINIRTRSHCPACLLTTCNICSLRYLGREVPPKAQERPLPFPDQTA FT LIQQQQLYMNWADQDRARLKQEVEDEKRRGQLLFEAERRRTERLGEEIAQQKLRIESME FT EEQKLKNDLHAHTERDLQKKIKELKRLLREEKIKRRSLRNGKDVRTGSSEDDASSEEAS FT GSEN" FT CDS 5166..7481 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF3b; contains aspartic protease and RNaseH/reverse FT transcriptase domains" FT /db_xref="GOA:C4NFN0" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:C4NFN0" FT /protein_id="ACN56751.1" FT /translation="MRVSIRIRGCPEFNVNAILDTGATVCCIEEERVPKEGLEESRMTA FT QFTGLNSTQQTRKKLKEGYMIIADHTFPLPFVYALNPMRIGRGIQFIIGCNFIRRMKGG FT LRIEGPTVTFYRNVSTIETQEKSTVAAXIGNINEERTMVFPRFRKEVARLIQEGYIGEN FT PLRHWSKNKVECTLRIKNPDLVIQDPPLKHVTPAAREFFQNQVSSLIKAQLIRPSRSRH FT RTTAFMVESGTSVDPKTGKEVRGKQRMVLNYKRLNDNTEKDQYSLPGINTIISRVAGKK FT VFSKFDLKSGFHQIRMSKESIPWTAFWTPDGLYEFLVMPFGLVNAPADFQRKMDNAFRG FT TEAFIAVYIDDILIFSETEEDHEQHLLKFAQIVEKNGLILSPTKMKIGVKSVDFLGVKI FT HQNKVQLQEHILKKIGDFREEDLLTKKGLRSWLGILNYARQHIPNLGKMLGPLYGKTSP FT TGEIRFNAQDWKLVREIKRKIQQLPPLEIPPKDCCIVLEADGCMDGWGAICKWKQFAYD FT PRSKERITAYASGKFQPIKSTIDAEIFAIMNAMEAFKIYYLDKKEMVIRTDCQAIVSFF FT NKSASNKPSRARWISFTDYITGTGIKIRIEHIDGKDNTLADYLSRLVFSLIIAEWKTQG FT RRSTAHHQAQSMAQTIGSCSKQQEPLLLREPPLKQEQEGTGEGPWGIEQLTLPLERLLK FT GLKTGPYKNKLIIGTGLMNSLKIALRILDLSPEVIISTYKLKEGYSEMGSQEMSVHNLQ FT LIDSPYCMKRPRRPGEAS" FT CDS 7055..7636 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:C4NFN1" FT /protein_id="ACN56752.1" FT /translation="MENARQEINSPPSSPVNGPNHRVMQQAARAFALERATVEAGARRN FT RGRPMGHRAVNPATRTPAQRFEDWSLQEQTYHRDWINEQFEDSLANLGPLARGYNFNIQ FT IERRLFRDGLSGDVGTQLAANRLSLLHEAAQEARRSVMTLQRMIRDRAEHNERFVTRDN FT AYMDLRQPYAEAQAQIEAAAIILMACIEDL" XX SQ Sequence 7961 BP; 2603 A; 1610 C; 1910 G; 1835 T; 3 other; tcggcaaaat catcacgact gagccgacga tccatagttt gtaaaatttc cgctgtgctg 60 tgcaatccct tattggtatc agagcgagta tcagtctgta agtacttgct cttagtttgt 120 tatttatggc aggctaagcc taccgtcggg gaaagaggtc cctgacagta gagtctcacg 180 ccggtccttt gttttcaatg tttgtattat aacgttataa gcatttttaa tgaaagacat 240 tttgatatac gcttgaatgt ttatctttcg gcttagtaag ttatcttgtt ctgctagtaa 300 atgttttata ttcctgagta aagaatatat tatttgaaca atattcgcta gtaaagaact 360 tcgctagtaa gggtcaatcg ataaaatcat ctgtttttcc aawttcccac gatcgttatg 420 agggcaaaag acgtaagttg cagtaagtcc acagggatgg ccgtgagtcg atgaaaaggt 480 gagtccaaga tgaacaggaa aggagattgg aaaaacactg attgtaagat taatactctg 540 aaaggtcttt cttgaaaggt ttttgtttaa ataataaatt tgatgatgtt tagtcttttg 600 ggaatataat ccattgaaag atttcaagtt tgctgaaaag agagcttata tcaacgtgtt 660 tgaatttgtc tttgcttatg acctttataa tcttttgaaa acatgtctga aagatgggag 720 aaatcccttc aggactggta tgattctcga aggtcacacc tcgagtacct tgatttagaa 780 actgttagta aaccttcgct tagccaatta gctcataatc ttagtattgt tagagataac 840 aacaacctac atactaaagt cctactaaaa cgttgttacg ttttagaaga aaaattggaa 900 gagcagtctc ttctgattaa aaggttagaa aaaggcttag aagccttaac tgaggagttt 960 ttatcctcaa gaccccttac cgcaaaacaa gttaaggagt tggttgttga aatagcggaa 1020 caaccaaagc ttgtagagca ggaagcgcta aagctcactg aggagcttaa aggaaaactt 1080 gataaggttg aaggccttat caaggattta aaggagttca ttactggatg aactacaagg 1140 agatccagga tctgcctgga tttaacaggg cgttaactgg aacagcgtcc ttgggagcag 1200 aaggcttcac ccagccttca ggaaaaactc agtccagtct cgacacctta ataagacaga 1260 acaatacgct tctgttctta acagggacca ttgaagatag ggtccaaggt atcgaggagg 1320 agctagtgga aatcagaaag gcgattttca ytaagggaaa agatccagat ctgtctggag 1380 tcgtaagtca acttcagcag ttgacgataa agggaaaggc tccagaaccc cgaggagtct 1440 taagggtgca acaagacccc tatctgcaaa ttaggaggca gataaatgag gagaacaggg 1500 gccgcaccag ttacagaagc cgctcttcaa ggaggagctc agaacctcca agaaggacgc 1560 ccgatcctct acgaggatca aatccgtgac tacaggcgaa tggcagaggc acgataccag 1620 ctgcagcgtc gggtagctcg tgtcctagga aggccatata gaaggacgct ggaaaggctt 1680 atgaatccag atcaaaacct ggaggattca ttaagcagaa gggccagaat agtacctgct 1740 gaggtactct attcttcagg cgaagggcct gaacatcaaa gggtgtacat ccacagaagt 1800 gaagaagaaa taacctgtgt ggatggtcaa caagtggatt tgccacttat caccccagaa 1860 agccatcaac agctgcttag gcagcaatat cgcttcattc atattggagc aatacaggtg 1920 agggtgcagg cgttgcatcg agcacaccaa gggactatgg tactagtcct taatacagac 1980 cgacggtgga acggagatca ggctctgttc ggaggtgttg aaggtgacct tacggaaggt 2040 gccttcatga catatgtaat ccccaacatt acaatgactg ttgaggattt ctgccgatca 2100 ataatggtag aattccagac aaggggatac agtgagtggg ttcaaggagc gaacctgcta 2160 atcacaaggg gtatggtagg aaggttatcc aacactccaa acgttggatt taattacaac 2220 atctcggcag taacagacta cttggccagc agaggtgtac gaaccctacc tggaagaaga 2280 tatagtacgg ctgatctcca gggcctaagg tggaacataa gaagacctcg tgaggtcatc 2340 cccagacacc caacggagat gataagcaga aatctcctag gaggaggatt ttccctatct 2400 tttagggaat accagccgat aacaacagag cagagaagag ctgctcagca cccagaagag 2460 gactccttgg aagaagaagt cctgggtgtt ctaaatgtag aagtcttgga ctgggatggt 2520 ctagacttcc ctgaacctga tccaactctg gttaattttg aaataccaga accagagccc 2580 caacaacaac accctgaaca ggttgtagaa cctgtatctg acgaaatact ggaatttaga 2640 agagaatatt ccagtatatg ggattatgga tcagaagaag aagcgctgct agagtttgtt 2700 tattactcaa caactccaga tgatagcaat tactggtctt acagtaatgc ttacagagaa 2760 cttgcagctg ctctagaagg aaacgtctca ccaaacgacg tggaaggttt ggaagaagtg 2820 gaaggtggaa cttccactca tttttccggg ggaggagagg tagtaccccc atcagaacca 2880 aattgttgta ttatgtgcaa caaaagaggc atccccgaag ataaaattct ctgccagaat 2940 tgcatggaca tcactgatga cagtgatgat gaacgagaag tagaaaggca ggaacgaaaa 3000 aggatgcaga aacaaaagga aaagagggta accccctcta cttctaaaca aacttcccaa 3060 gaggaaatta ttggagccat tgaaggtgat ccttgggaag aatttgaaga gatggtagaa 3120 aggctgcatg cgcaggtgac acagcagcaa cctaaccccc ctgctgaccc acaagcatca 3180 aacaccaggg gacaatcagc tcagtcacca tacaggcccc cagaagatac aactatgggc 3240 caaccatcat atgctccagc cagaccaact gtggaaacag tatcgggacc gcctagcttt 3300 aggacggact caaggttcct aaaaagggga accaacaatg aaaattggtc tctaccacca 3360 gcccaacaac aagggggagt acttctaaca ctccctgaac aaatggggct gctgaatgat 3420 gtattcatga gatgggagac tacaactctc aaccatatgt ccctcatgaa tatacaagat 3480 actcaggaga aagtagatta tatggaaaat ctacttggag agactgccaa actggcttgg 3540 atccagtgga ggacagtcta tgaggatgaa tacaaggcca ttgtggctca agctgaaggg 3600 agaatgggaa cacagaatgt catctcccaa gtaaggcgaa tcctcacctt aagtgaccca 3660 gtacaggggt caacagctat acaggaccag gcctatagag accttgaaag gcttcagtgc 3720 catgacgtca aggatatggt caagttcctc aatgactata tgaggcttgc cacaaaaact 3780 ggtcgactgt acataggaag agagctttct gacaagctct ggatcaaaat gcccggggat 3840 cttggaacca agatcaagga agaatttgat aaaaaacatc ccggagcaga aatagctgtc 3900 attccgcgca tattctttgc gcataaatat cttgaggata ggtgtaagga agccgccttc 3960 accagaagcc taaagagtgt gtctttctgc aaagacatac caatccaagg atattacggg 4020 agtgataagc ccaaatatac ccccagaaaa gcaaagacgt ataaggggaa gccgcatgaa 4080 actcatgtga gaatcgatag gcggaaaaac ctggacagaa actcgcactg caagtgtttc 4140 atatgcgagg aacctgggca ctatgcaaga gattgcccaa atcagaaaag gaacatcaag 4200 cgggtaatga tgttcaacca ggttaacata ccggacaatt atgatattgt ctcggtacaa 4260 gaaaatgaag aagatagcga cgctatctat agcctgactg aaggagaaga aggtgatgag 4320 attgccttcg gaattgtaca ggaatctgta catatgatca gtcatcaggt gatagggtca 4380 tggagggccc acattgacat gagcgaagta cagaaggtct gccgccatca atggcaggac 4440 caccaggaga tagaagctcc aggagaagat acttgcctct ggtgcaagca tcacattaac 4500 atcaggacaa ggagccattg ccctgcatgt ttgctcacaa cctgcaacat ctgttcgttg 4560 cgatatttgg gaagagaagt cccaccaaag gctcaagaaa ggcctttgcc tttcccagac 4620 cagactgccc taatacaaca acaacagctc tacatgaatt gggcagatca ggatcgtgca 4680 cgcctcaaac aggaggtaga agatgagaaa agaagaggac agctcctctt cgaagctgaa 4740 aggagacgaa ccgaaaggct cggtgaggaa atcgctcagc aaaaactgag gattgaatcc 4800 atggaggaag aacaaaagct gaagaatgac ctccatgctc atactgaaag ggatcttcag 4860 aagaagatca aagagttaaa gaggctgtta agagaggaaa aaattaaaag gagaagcctc 4920 aggaatggaa aggatgtcag aacaggaagt tctgaagatg atgcttcatc tgaggaggca 4980 tcaggatcgg aaaactagca agggagcagg atgagtatgg tggctcctgt tctcaaaacc 5040 atgaatccac catagtctgt gaggaacttt atcctcaatc tgagatcgta ggagtgataa 5100 aagatgccat atcctctcag atcatatcat cggcatcagg agagctaaat aatagactct 5160 acaacatgag agtctctatc agaatacgag gttgtccgga gttcaatgta aacgccattt 5220 tagatacagg ggcaacagtt tgctgcattg aagaagaaag agtccctaaa gaaggacttg 5280 aggaaagcag gatgacggct cagtttacgg gcctaaattc tacacagcaa acaaggaaga 5340 agctgaagga gggatatatg atcattgctg atcatacttt tccacttcct ttcgtatatg 5400 ctctcaaccc catgaggata ggacgaggta tccaattcat aattgggtgc aatttcatca 5460 gaagaatgaa agggggtctc cgaatagaag gaccaacagt taccttctat cgaaacgtgt 5520 ctactataga gacacaggag aaatcaactg tagcggctgs cattggaaac atcaatgaag 5580 aaaggaccat ggttttccca aggttcagaa aggaggtagc cagactaatt caagaggggt 5640 atataggaga aaaccctctt agacattggt ctaaaaataa ggtggaatgc acgctcagga 5700 ttaaaaaccc tgatctagtc atacaggacc cacctctgaa gcatgtaacg ccagctgcaa 5760 gagagttctt ccagaaccaa gtaagcagct tgatcaaggc tcagctcata aggccttcaa 5820 ggagcaggca caggaccact gcctttatgg ttgaatctgg aaccagtgtg gatccaaaaa 5880 caggaaaaga ggtcagaggc aagcaacgga tggtgctcaa ttataaacgc ctcaatgata 5940 acactgaaaa ggatcaatat tccttaccag gcatcaacac tatcatcagc cgggtagcag 6000 ggaagaaggt cttttctaaa tttgacctca aatcaggctt ccaccagatc agaatgagta 6060 aagagtccat accctggact gctttctgga ctcctgatgg gctttacgaa ttcctcgtaa 6120 tgccatttgg gctggtaaat gcgccagcag attttcagag aaaaatggac aatgccttta 6180 ggggaacaga ggcgttcatt gcagtctaca tagatgatat cctcatcttc tctgaaacag 6240 aagaggacca tgagcaacat ttgctcaaat tcgcccaaat agtagaaaag aatgggctca 6300 ttctaagccc aacaaagatg aagattgggg taaaaagtgt ggacttctta ggagttaaga 6360 tccaccagaa caaggtccaa ttacaagagc atatccttaa aaaaattgga gatttcaggg 6420 aagaggatct gctaacaaag aaagggctaa gatcgtggtt aggaattctc aattatgcaa 6480 ggcaacatat tcctaatcta ggaaaaatgt taggcccatt atacgggaaa acctcaccca 6540 ctggagaaat aaggtttaat gcccaggatt ggaagttggt cagagaaata aaaagaaaaa 6600 ttcaacaact tcctcctttg gaaatccccc ccaaggactg ctgtatagtc cttgaagctg 6660 atggatgcat ggatggatgg ggagccattt gcaagtggaa acagtttgca tatgatccgc 6720 gctcaaaaga acgcattaca gcatatgcat ctggcaaatt tcagccaatt aaatcaacaa 6780 ttgatgctga aatctttgcg attatgaatg caatggaagc tttcaagata tattatcttg 6840 ataaaaagga aatggtgata aggacagatt gccaagcaat tgtgtccttc tttaacaaaa 6900 gtgcttccaa caagccaagt agggcacggt ggatttcctt caccgactac attactggga 6960 ctgggattaa gataaggata gagcatatag atggcaagga taacactctt gcagattatt 7020 tatccaggct ggtcttttct cttattattg cagaatggaa aacgcaaggc aggagatcaa 7080 cagcccacca tcaagcccag tcaatggccc aaaccatagg gtcatgcagc aagcagcaag 7140 agcctttgct cttgagagag ccaccgttga agcaggagca agaaggaaca ggggaaggcc 7200 catggggcat agagcagtta accctgccac tagaacgcct gctcaaaggt ttgaagactg 7260 gtccctacaa gaacaaactt atcataggga ctggattaat gaacagtttg aagatagcct 7320 tgcgaatctt ggacctctcg cccgaggtta taatttcaac atacaaattg aaagaaggct 7380 attccgagat gggctctcag gagatgtcgg tacacaactt gcagctaatc gactctccct 7440 actgcatgaa gcggcccagg aggccaggag aagcgtcatg acgcttcaaa gaatgattag 7500 ggatcgggct gaacataacg aaaggttcgt cactagggac aacgcctata tggacctcag 7560 gcagccatac gctgaagccc aagcccagat tgaagcagcg gccataatcc ttatggcctg 7620 cattgaggat ctttaggttg cttaacctaa agagacgaca gaggacggtg gtaggtccgg 7680 acaacgacgc cacctttatc cgccatgtga tgcggcatgt gcatcatttg tttttgtcgg 7740 ccatttgctg actttagagt ctagggtttg tgaaaagcag atgcttctcg gtgaagtgag 7800 acttttcttt aggaaaagta aagataagaa aggaatctta tcttactttg tcggccacct 7860 tacttttgga catttagcgt gttgtgaaga aaaatttcct atataaggaa ccattttctt 7920 tcatcaaaca gacagaagta acaagtaaca cacaaaagaa a 7961 //