ID FJ560943; SV 2; linear; genomic DNA; STD; VRL; 8082 BP. XX AC FJ560943; XX DT 25-MAY-2009 (Rel. 100, Created) DT 12-SEP-2017 (Rel. 134, Last updated, Version 3) XX DE Sweet potato pakakuy virus, complete genome. XX KW . XX OS Sweet potato pakakuy virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-8082 RX DOI; 10.1016/j.virol.2009.03.024. RX PUBMED; 19394993. RA Kreuze J.F., Perez A., Untiveros M., Quispe D., Fuentes S., Barker I., RA Simon R.; RT "Complete viral genome sequence and discovery of novel viruses by deep RT sequencing of small RNAs: a generic method for diagnosis, discovery and RT sequencing of viruses"; RL Virology 388(1):1-7(2009). XX RN [2] RP 1-8082 RA Kreuze J.F., Perez A.; RT ; RL Submitted (17-DEC-2008) to the INSDC. RL Germplasm Enhancement and Crop Improvement, International Potato Center RL (CIP), Avenida la Molina 1895, Lima Lima 12, Peru XX RN [3] RC Sequence update by submitter RP 1-8082 RA Kreuze J.F., Perez A.; RT ; RL Submitted (14-JUN-2011) to the INSDC. RL Germplasm Enhancement and Crop Improvement, International Potato Center RL (CIP), Avenida la Molina 1895, Lima Lima 12, Peru XX DR MD5; 3a303109c3681c44b42a36c2c6715b60. XX CC On Jun 14, 2011 this sequence version replaced FJ560943.1. XX FH Key Location/Qualifiers FH FT source 1..8082 FT /organism="Sweet potato pakakuy virus" FT /isolate="Huachano1" FT /mol_type="genomic DNA" FT /country="Peru" FT /isolation_source="sweet potato cv. Huachano" FT /db_xref="taxon:2034762" FT misc_feature 1..18 FT /note="similar to tRNA-Met sequence" FT stem_loop 76..92 FT misc_feature 138..656 FT /note="putative leader sequence" FT CDS 657..1085 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:C4NFM2" FT /protein_id="ACR22895.2" FT /translation="MSERWEKSLQNWYDSRRSHLEYLDLESVSKPTLSQLAHNLSIVRD FT NNNLHTKVLLKRCYTLEEKLEEQSLLIKKLEKGLEALTEEFLSSRPLTAKQVKELVVEI FT AEQPKLVEQEALKLTEELKGKLDKVEGLIRDLKEFITG" FT CDS 1082..1540 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:C4NFM3" FT /protein_id="ACN56744.1" FT /translation="MNYREVQDLPGFKRALTGTASLGAEGFNQPSGKTQSSLDTLIRQN FT NTLLFLAGVSDDRIQGIEEELVEIRKAISKRETPDLSGVVGQLQQLTIKGKAPEPRGVL FT RVYQDPYLQTRRQINEETRGRSSHRSRSSRGGSEPPRRTPDPPRGSDS" FT CDS 1437..5006 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF3a; contains coat protein & movement protein" FT /db_xref="GOA:C4NFM4" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:C4NFM4" FT /protein_id="ACN56745.1" FT /translation="MRRPGAAAVTEVGLQGEGRNPQGERQILHEDQIRDYRRMAEARYQ FT LQRQVARVLGRPYRRTLERLMNPDQNLEDSLSRRARIVPAEVLYSSTEGTENQRVYIHR FT SEEEITCLDNQQVDLPLITPQSHAQLLRQNYRFIHIGAIQVRVQALHRTHAGTMVLVLN FT TDRRWNGDLSLFGGIEGDLTEGAFMTYIIPNVTMTVEDFCQNIMVEFQTRGYSEWVHGS FT NLLITRGMVGRLSNTPNVGFNYNVSAVTDYLVSKGVRALPGRRYSTADIQGLRWNVRRP FT REIIPRRPTEMISRNLLGGGFSLSFREYQPITAEQRRAAQHPEEDALEELEHEVLGVLD FT VEVADWDNLDFPEPDPTMVNIEIPEPEPQQPALEPVEHLTDEVLGFRREASSWNYLGSD FT SEEEALLEFLYYRNTPDDGPYWNMEYSMAYQQLAAALEEDVSPNDVESLDKNTVEGGTS FT TPFFGGEEAVPPKNSENSCIMCNKKGIPGDKILCQNCMDITDDSDDEREVQRQERRKRM FT QRQKEKRVTPSTSDQTHHEVLGAINDEMPNTAEEFEEMVERLYAQVSQQAPEASNPAAP FT STSRGQSAXSPSXPPEDISMGQPSYAPARPGTTTEISGPPTFRTDSRFLKRGTNNENWS FT LPPAQQQGGVLLTLPEQMGLLNDVFMRWETTTLNHMSLMNIQDTQEKVDYMENLLGETA FT KLAWIQWRTVYEDEYKTIVGQAEGRMGTQNVISQVRRILTLSDPVQGSTAVQDQAYRDL FT ERLQCNDVKDMVKFLNDYMRLATKTGRLYMGAELSEKLWIKMPGDLGTKIKEEFNKAHP FT GAQIAVIPRIFFAHKYLEDRCKEAAFARSLKSVSFCKDIPIQGYYGNDKPKYTPRKART FT YKGKPHETHVRIDRRKNLDRNSHCKCFICEQPGHYARDCPNQKRNINRVMMFNQVNIPD FT NYDIVSVSENAEDSDAIYSLTEGDDAEETNFGLVHESVHMITHQVIGSWRAYIEPSETQ FT KVCRHQWQDHQEIELPGEDTCLWCKHHINIRTRSHCPACLLTVCNICSLRYLGREVPPK FT AQERVLPFPDQSALIQQQQAYMNWADQDRARLKQEVNDERRRGQLLFEEERRRAERLGD FT EIAQLKLRMESMEEEQKLKNDLYTQTEKDLKNRIRVLKDKKMELKEXLKKAKXXRYEAL FT EKERKSGRKVLKMRGVAPSLKRC" FT CDS 5116..7500 FT /codon_start=1 FT /product="RNaseH/reverse transcriptase" FT /note="replication protein; ORF3b; polyprotein; contains FT aspartic protease domain and RNaseH/reverse transcriptase FT domain" FT /db_xref="GOA:C4NFM5" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:C4NFM5" FT /protein_id="ACN56746.1" FT /translation="MIQGAVSPQIVSSASGELNNRLYNMKVCIRIRGCPEFSVNAILDT FT GATVCCIEEERVPKEGLEESKMTAQFTGLNSTQQTRKKLKEGYMLIGEHMFPLPFVYAL FT NPMRIGRGIQFIIGCNFIRRMKGGLRIEGPTVTFYRNVSTIETQEKSTVAATIGSINEG FT RTLIFPRFRKEVAALIKEGFIGNNPLLHWTKNRVYCKLQIKNTDLIIQDPPLKHVTPAA FT REFFKSQISDLLKAKLIRPSKSKHRTTAFMVESGTIVDPKTGKEIRGKQRMVYNYKRLN FT DNTEKDQYSLPGINTIVSRISGKKIFSKFDLKAGFHQIRMEEKSKPWTAFWTPEGLYEF FT EVMPFGLMNAPADFQRKMDNAFRGTDAFIAVYIDDILVFSENEEEHEDHLLNLAQIVRR FT EGLILSPTKMKIGVKEVDFLGIKIQGNKIQLQEHILKKIGDFKEKDLLTKKGLRSWLGI FT LNYARQYIPNLGKLLGPLYGKTSPTGEIRFNAQDWKLVREIKRKVQQLPPLEIPPKDCC FT IVLEADGCMEGWGAVCKWKQSAYDPRSKERIAAYASGKFQPIKSTIDAEIFAIMNAMEA FT FKIYYLDKKEMIIRTDCEAIVSFFNKSASNKPSRARWISFTDYITGTGIKIRIEHIDGK FT DNILADYLSRLVFSLIIAEWKTQEKSIAPLQAPRITLTKXSCSKQQEPLLLRELSMKRP FT LEDKEDQGPWSILLLTQPIEHLLKGSRNGQDRSKPITETGSMTSLKIALMILDLSPEVI FT ISTYGLKEGSLEKACQEMWVHNSKQADRPYCMRRPRRPGEA" FT CDS 7077..7658 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:C4NFM6" FT /protein_id="ACN56747.1" FT /translation="MENAREINSPPSSPQNNSNQRVMQQAARAFALERAIYETTARRQR FT GPRTMEHPAVNPANRTPAQRFEEWSRQEQTYHRDWINDQFENSLNDLGPLARGYNFNLW FT LERRLLREGLPGDVGAQLQASRQALLHEAAQEARRGVMTLQRMIRNRAQHNRRYITRDN FT AAGDLQGSYSEAQAQVEAAAIILMALIEDL" XX SQ Sequence 8082 BP; 2698 A; 1574 C; 1923 G; 1870 T; 17 other; tggtatcaga gcgagtatca gtcaatctgt aagtacttgc tctacgttgt attttggttt 60 ttggtatttt agtatggcag gctaagccta ccgtcgggga aagaggtccc tgacagtaga 120 gtttcacgcc agtccttgtt ttcaatgttt gtattataac gttataagca tttttaatga 180 agaatatttt gatatacgct tgaatgttta tctttcagct tagtatgatt atttgttttg 240 ctagtaaata aattatactt ctccgagtaa agtttagatt tgagaaattc ttcgctagta 300 ctgagtggtt cgctagtaaa aacttgattc aataccgaag ggatgccttg agtaaactaa 360 ttccaataat aaggcaaaag acgtaaatca cagtaagtcc cgcgggaggg ccgtaagatg 420 atgaaaaggt gagcctaata tttggaataa aatttacttt gagacgatga tgtaagtatt 480 gaattaagag ttgaaaggtc cattcgggaa aggttttatt tcaaaaatct ctatgatgac 540 ttctgtcttt tggaggaata taatttgttg aaagatttca aattttcaga aaagagagct 600 tatatcaacg tattcagatt tgtccttgct tatgactttt ataatctttt gaaaacatgt 660 ctgaaagatg ggagaaatcc cttcagaact ggtatgattc tcgaaggtca cacctcgagt 720 accttgattt agagtctgtt agtaaaccta cgcttagcca gttagcccat aatctaagta 780 ttgttagaga taacaataac ctccacacaa aggtcctttt aaaaaggtgt tataccttag 840 aagaaaaatt agaagagcag tctcttctga ttaaaaaatt agaaaaaggc ttagaagcct 900 taactgagga gttcctttcc tcaagacctc ttaccgccaa acaagtaaaa gaattggttg 960 tggaaatagc agagcagcca aagttggtgg aacaggaagc acttaagctt actgaggagc 1020 ttaaggggaa actcgataag gttgaaggcc ttatcaggga tctaaaggag ttcatcaccg 1080 gatgaactac agggaagtcc aggatcttcc tggatttaaa agggcgttaa ccggaacagc 1140 gtccttggga gcagaaggct ttaatcagcc ttcaggaaaa acacaatcca gccttgatac 1200 actcataagg cagaataaca ctctgttatt cttggccggg gtttctgacg ataggatcca 1260 aggaatcgag gaggaactag tcgagatcag aaaggcaatc tcaaaaagag agactccaga 1320 tctctctggt gtggtgggtc agcttcagca gctgactata aaaggaaagg ctccagaacc 1380 aagaggtgta cttcgtgtat accaagatcc ttatctgcaa actaggaggc agataaatga 1440 ggagaccagg ggccgcagca gtcacagaag tcggtcttca aggggagggt cggaaccccc 1500 aaggagaacg ccagatcctc cacgaggatc agattcgtga ttacagaagg atggcagaag 1560 cacggtacca actacagcgt caggtagccc gtgttctagg aaggccatac agaaggacgc 1620 tggaaaggct tatgaatcca gatcaaaact tggaggattc attaagcagg agagcaagga 1680 tagtacctgc tgaggtacta tattcgtcca ctgaagggac agaaaaccag agggtgtata 1740 ttcacagaag tgaggaagag atcacttgcc tggacaatca gcaagtggat ctaccactca 1800 ttacccctca aagccatgcg cagctcctga gacaaaatta cagattcata catatcggag 1860 caatacaggt tagggttcaa gccctacaya ggacgcatgc rgggaccatg gtgttggtcc 1920 taaayacgga yagacggtgg aacggggact tatccctgtt tggaggaatt gaaggcgatc 1980 ttacggaagg tgccttcatg acatatatca tccccaacgt aacaatgaca gttgaggatt 2040 tctgccaaaa tatcatggta gaattccaga ctaggggata ctctgagtgg gttcatgggt 2100 cgaacctact aatcactcga ggaatggtag gaagattatc caacactcca aatgttggat 2160 ttaactataa cgtctccgct gtaaccgatt atttggttag caaaggcgta cgagccctac 2220 caggacgacg atacagtacg gctgacatcc agggcctaag gtggaacgtc aggagacctc 2280 gtgagatcat cccaagaagg cccacagaga tgataagcag aaacctccta gggggaggat 2340 tttccctatc ctttagggaa tatcagccaa taacagctga gcaaaggagg gcagctcagc 2400 atcctgagga agatgctcta gaagaattgg agcatgaagt gttgggagta ctagacgtag 2460 aagtcgcaga ttgggacaat ctggatttcc cagaaccaga cccaacaatg gtgaacatag 2520 agatccctga gccagaacca caacaaccgg ctctagaacc agtagagcac ttaactgatg 2580 aagtgctagg tttccgaaga gaagcaagct cttggaacta cttgggatca gacagtgaag 2640 aagaagcact gctagaattc ctgtattaca ggaatactcc agatgatgga ccatactgga 2700 atatggaata tagtatggca tatcagcagt tagcagctgc tttggaagaa gacgtctcgc 2760 caaacgacgt ggaaagtttg gacaaaaata cagtggaagg tggaacttcc actccttttt 2820 tcgggggaga agaggcagta ccccctaaaa attctgaaaa cagttgcatc atgtgcaaca 2880 agaaaggcat cccaggggat aaaattctct gccagaactg tatggatatc actgatgata 2940 gtgatgatga aagagaagtt caacgacaag aaaggagaaa aaggatgcag aggcaaaagg 3000 aaaagagggt aaccccctct acatctgacc aaactcacca tgaggtactt ggggcgataa 3060 atgatgaaat gcctaatacc gcagaagagt ttgaagaaat ggtggaaaga ttgtatgcgc 3120 aggtgtcaca acaagctccg gaagcatcaa accctgctgc accatccacc tcaagagggc 3180 agtcagccca wtccccwtcc rgscccccag aagacatatc aatgggccaa ccctcctatg 3240 cacctgcaag gccaggaaca acgacggaga taagtggacc cccgactttc aggacagact 3300 caaggttctt gaaaagaggg actaataacg aaaattggtc gttgccacca gcacagcaac 3360 aaggaggagt gctgttaact ctcccggaac aaatgggatt gttaaatgat gttttcatga 3420 gatgggagac aactacactg aaccatatgt ctctcatgaa catccaggac acccaggaaa 3480 aagtggatta catggaaaac ctactgggtg aaacagcaaa actggcatgg atccaatgga 3540 gaacggtcta tgaggatgag tataagacta tcgtaggcca agccgaaggg agaatgggga 3600 cacagaatgt catctcccaa gtcagaagga tcctgacctt aagtgaccca gtgcaagggt 3660 caacagcagt acaggaccag gcatacagag atctagaacg cctacaatgt aatgatgtta 3720 aggatatggt caaattcctt aatgattata tgaggctagc aaccaaaact ggtcgactgt 3780 acatgggagc tgagctttcc gagaagctct ggataaagat gccgggtgac cttggtacta 3840 aaatcaagga agagttcaac aaggctcacc ctggagcaca aatagctgtc ataccgcgca 3900 tattctttgc gcataaatac cttgaagata ggtgtaaaga agctgctttt gcaaggagct 3960 taaagagtgt atccttctgc aaggatatac caattcaagg gtattatggt aatgacaagc 4020 caaagtatac ccccagaaaa gcaaggacat acaaggggaa gcctcatgaa acacacgtga 4080 ggattgatag gcgaaagaac ctggatagga actcacactg taagtgtttt atatgtgagc 4140 aaccggggca ctacgcaagg gattgcccaa accaaaaaag gaacatcaac agagtaatga 4200 tgttcaacca ggtcaatata ccagacaatt acgatattgt ctcggtatct gaaaatgcag 4260 aagatagcga tgctatctac agcctgactg aaggagatga tgcggaggaa accaattttg 4320 gattggtaca cgaatccgta cacatgatta ctcatcaggt gatagggtca tggagggcct 4380 atatwgagcc aagtgaaacg caaaaggtct gtcgccatca atggcaagac catcaggaga 4440 ttgarctccc aggagaagat acttgcctct ggtgcaagca tcatattaac atcaggacta 4500 ggagccattg tcctgcatgt ttgctcacag tctgcaacat ctgttcgttg cgatatttgg 4560 gaagagaagt cccaccaaag gctcaagaaa gggtcttacc ctttcctgat caaagcgccc 4620 ttattcaaca acaacaagcg tacatgaatt gggcagatca agatcgagcg cgcctcaaac 4680 aggaggtgaa tgacgaaaga agaagaggac aactcctctt tgaagaagaa aggagacgag 4740 ctgaaaggct cggtgatgaa atcgctcagc taaaactgag gatggaatct atggaggagg 4800 aacaaaagct aaaaaatgac ctctatactc agacagaaaa ggacctcaaa aatagaataa 4860 gggtcctgaa ggataagaag atggagctta aagaaasctt aaaaaaggct aagargmtga 4920 ggtacgaagc mttagaaaag gaaaggaaat caggacggaa agttctgaag atgagaggag 4980 tagcacccag tctgaagagg tgctagattc ggaaaactag caagggagca ggaggagaat 5040 ggtggctcct gttctcaaat aacagaatcc accatagytg ttgaggagct tagacctcaa 5100 wctgagatcg tagggatgat acaaggtgcc gtatctcctc agatcgtatc ttcggcatca 5160 ggagagctga ataacagact ttacaacatg aaagtctgta taagaatacg aggttgccca 5220 gaattctcgg tcaatgcaat tttagatact ggggcaacag tttgctgcat agaggaagaa 5280 agggttccca aagaaggact agaagagagc aaaatgactg ctcaattcac aggccttaac 5340 tcaacccagc aaacaaggaa gaagctcaag gaaggatata tgttgatagg agaacatatg 5400 ttcccacttc ctttcgtata tgctctcaac cccatgagaa taggaagagg catccagttc 5460 ataattggat gtaatttcat cagaaggatg aaagggggac tccgtataga aggaccaaca 5520 gtcaccttct atagaaatgt ttctacaata gaaacacagg agaaatcgac tgtagcagct 5580 actataggaa gcatcaatga aggaagaacc ttaattttcc caaggtttag aaaagaagta 5640 gccgccctga taaaggaagg atttattggg aataatcctc tccttcactg gacaaaaaat 5700 agggtttact gtaaattgca gatcaaaaac actgatctaa tcatacaaga ccctccactg 5760 aagcatgtca cacctgctgc aagagagttc tttaagagcc aaataagtga cctgctaaag 5820 gctaagctta tccggccttc aaagagtaag cataggacca cggccttcat ggttgaatca 5880 ggaacgattg tggatcctaa aacaggaaaa gagattagag gcaaacaaag gatggtttac 5940 aactacaagc gcctcaatga caatacagaa aaagatcagt attccctacc gggaatcaac 6000 actattgtca gtagaatatc tggaaaaaag atattctcaa aatttgatct caaagcaggc 6060 tttcatcaga taagaatgga ggaaaagtcc aaaccatgga ctgctttttg gactccagaa 6120 gggctctatg aatttgaagt catgcccttt ggactgatga atgcaccagc agattttcag 6180 agaaagatgg ataatgcatt taggggaaca gatgcattta tcgcagtata tattgatgac 6240 atattggtat tctctgaaaa tgaagaagag catgaggatc atctcttaaa tttggcccaa 6300 attgtgagaa gagaagggct tattctaagc ccaacaaaaa tgaaaattgg agtcaaagaa 6360 gtggatttcc taggaataaa gatccaagga aataagatcc aattgcagga gcatatcctt 6420 aaaaagatag gagactttaa ggaaaaggat ttgctcacaa agaaagggtt aagatcttgg 6480 ctaggcatcc ttaactatgc taggcaatat attcctaatt taggaaaatt gctaggccca 6540 ttatatggga agacatcgcc taccggagag ataaggttta atgcccaaga ttggaagttg 6600 gtacgtgaaa tcaaaagaaa agtccaacaa cttccccctt tggaaatacc cccaaaggac 6660 tgctgtatag tccttgaagc tgacggttgc atggaaggat ggggagccgt ctgtaaatgg 6720 aaacagtccg catatgatcc acgttcaaag gaacgtatcg cagcatatgc atctggcaag 6780 tttcagccta tcaaatcaac aattgatgct gaaatctttg caataatgaa tgccatggaa 6840 gccttcaaga tttactatct tgacaaaaag gaaatgataa taaggacaga ttgtgaagca 6900 atagtgtcct tcttcaataa aagtgcttcc aacaagccaa gcagggctcg gtggatatca 6960 ttcaccgact atataactgg aacggggatt aagataagga tagagcatat agatggcaag 7020 gataatattc ttgcagatta tttatctagg cttgtatttt ctctgattat tgcagaatgg 7080 aaaacgcaag agaaatcaat agcccccctt caagccccca gaataactct aaccaaagrg 7140 tcatgcagca agcagcaaga gcctttgctc ttgagagagc tatctatgaa acgaccgcta 7200 gaagacaaag aggaccaagg accatggagc atcctgctgt taacccagcc aatagaacac 7260 ctgctcaaag gttcgaggaa tggtcaagac aggagcaaac ctatcacaga gactggatca 7320 atgaccagtt tgaaaatagc cttaatgatc ttggacctct cgccagaggt tataatttca 7380 acttatggct tgaaagaagg ctccttagag aaggcctgcc aggagatgtg ggtgcacaac 7440 tccaagcaag cagacaggcc ttactgcatg aggcggccca ggaggccagg agaggcgtaa 7500 tgacgcttca aaggatgatc agaaatagag cccagcataa cagacgatac atcaccagag 7560 acaatgctgc tggtgactta caaggctcat actctgaagc ccaggcccaa gtggaagctg 7620 cggctatcat cctgatggcc ctgattgagg atctttaggt tgcttaacct aaagagacga 7680 cagaggacgg tggtaggtcc ggacaacgac tatcacctta tctgctatgt agtgcggcat 7740 gtgcactatt ttgtttttgt cggccatttg ctgacttttg tgtctagggt tttgaaaagc 7800 agatgcttct cggtgaagcg agtcttttct tttaagaaaa gagagataag ataaggtatc 7860 ttatcttgct ttgtcggcca ctcttccttt aggccatttg tcatcttatg aagatatcat 7920 cctatataag gatctcatat tttcatgaat gacatataga agaaagaggg aatcacccaa 7980 taaaaaaaaa aaaaaaaaca gagagaaaat cggcaaaatc atcacgactg agccgacgat 8040 ccaatagttt aaaaatttcc gctgtgtgtg ctagtgtctt tt 8082 //