ID FJ560490; SV 1; linear; genomic RNA; STD; VRL; 5705 BP. XX AC FJ560490; XX DT 26-MAR-2010 (Rel. 104, Created) DT 24-JUN-2010 (Rel. 105, Last updated, Version 2) XX DE Tomato chocolate virus isolate ToChV-G01 segment RNA2, complete sequence. XX KW . XX OS Tomato chocolate virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus; OC unclassified Torradovirus. XX RN [1] RP 1-5705 RX DOI; 10.1007/s00705-010-0640-1. RX PUBMED; 20229114. RA Verbeek M., Dullemans A., van den Heuvel H., Maris P., van der Vlugt R.; RT "Tomato chocolate virus: a new plant virus infecting tomato and a proposed RT member of the genus Torradovirus"; RL Arch. Virol. 155(5):751-755(2010). XX RN [2] RP 1-5705 RA Verbeek M., Dullemans A.M., Maris P.C., Van den Heuvel J.F.J.M., RA Van der Vlugt R.A.A.; RT ; RL Submitted (17-DEC-2008) to the INSDC. RL Biointeractions and Plant Health, Plant Research International BV, P.O. Box RL 69, Wageningen NL-6700 AB, The Netherlands XX DR MD5; eb35bddb073ebdef7ad51d92becafd44. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..5705 FT /organism="Tomato chocolate virus" FT /segment="RNA2" FT /host="Solanum lycopersicum L." FT /lab_host="Nicotiana hesperis 67A" FT /isolate="ToChV-G01" FT /mol_type="genomic RNA" FT /country="Guatemala" FT /collection_date="2007" FT /db_xref="taxon:626985" FT /culture_collection="DSM:22139" FT 5'UTR 1..181 FT CDS 182..751 FT /codon_start=1 FT /product="ORF1" FT /db_xref="UniProtKB/TrEMBL:D4HNE0" FT /protein_id="ACU01025.1" FT /translation="MSFISRLNISEEEKAFHSQVSTADWVCSVDVGTGLINSNPTLDFK FT VTPKTGGSVSILSVSWENSYPQLVPGHYLLRSGNWPVSNVKLSGLLVHRSVKLETTRKL FT LEAQKVQILNQVQAETSTSTSTKGKGVVDILKSQEEEISKLKEELLRKEKELSERDSEI FT AKLKLQVSNLPGNNDIFSGWAETPPQ" FT CDS 711..4289 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4HNE1" FT /protein_id="ACU01026.1" FT /translation="MTSFLDGRRHPPSNKEQEAASERLMSQITAAVEEGNKNMLRKLGM FT GSYGLLRGSQDKQAMELFDPKDVGKITSLWTSFKQKFVESKEHANLFFHLYGVLFFMVP FT HVTGGEGRVKICLCSSNDPMNPVIQEKTLSLAGGAQAVLMSPSITLPFLERGPMFYYTL FT ECQGTQAQIPCSVVAIWKQKIDARSAIYSQQETMSWAIEALNRPQFFQDRQEAAQYIAS FT VYSSGQSSQMALENRAFVGEQLGDTRMNVVSESTMSRSTSLRIPTLRVQSKRFPSLEIP FT SSALLQQLETREETVQDEDDGGLFPTKKACSPNYSIIWDNLNIDTFVDMEFPPDWTDRT FT LAQQVQYVMFTKASMGNVIIPNHITKRELHNINRETITPDNYESILKEYGITKVGNLSR FT SDDWYSLTLKQRVVDLVHQRDHQLYMTGDFTNPLPRFDCYDGLTLAERHMRSIRASFAT FT SGSSQIRVAQTIATIKSSASNEGNVQDSFVSRTAMESTSGEKSIHIDTSHSEEDVKPAD FT VIFDFGNDMEVGDALELEMQQPVCVASNEYFNAGVFEFVWEKSAHVAEQVMAIALPAAL FT FSQKKETSMGAQMLKYYDAALITYKIILYVSGVGAISGQLALVWDECNVLNRKKEFVNI FT ATLYASKHTLVSASQQNSAEFIFTPTGIGKFVPLDEGTGAMDLGSVRVFVTHPLSSATE FT LSGVPCHLHLQCKVLSTNILQPPRVIAQTQYGMKADQTYFKSFPTNQVLLHYNWNTTAT FT MGTTLVSIFSPSGIYESDGTLQPSLLGNIARNCKWWTGVCVFEICIEKTLFHSGSLAIG FT LGTLNTKMSSAHDIFNMPYVVCNLEMGRKFQFKCAISNWNGKNLLSTGRKSSLPRPNHY FT SHLRLFATVMKPLVSTSVHLDSVGVTVQLKRIEGLTLGGTVSVKPIYGHWTKGKSTVDF FT LFSEMNLEHRKEIEKLRKVNVEEYDKKGKDKPGKEGQISVSIREKFTYGAVQYLCMGWK FT DEERLLVLPCAPWSIRFAHTSPVKEAITCPFIDWCTSFCYWSGSLQYSIVLHRVQASAN FT VGGILNVALDSSGYPFPAGMHSGSYVVSAGGGSKWDFSYGVSTNTFSFVVSDDEFFPRR FT HTRMREFSKNQSRIMSLQDRLGNLIINLPPKDLISSIEILIAPGPDFKLEIAQPPSANH FT EKFLGNMQTHTYLYTPDFSELRDFGG" FT 3'UTR 4290..5695 FT polyA_site 5696 XX SQ Sequence 5705 BP; 1657 A; 1104 C; 1293 G; 1651 T; 0 other; aaaagaattt ttatatatat ctgttatgta acccaagccg ttacgtggac caagtctccg 60 ctaccagata tttatttatt ttcttttgaa gttcacagtg gtaatactct tcaaactacg 120 actttggggt attccacaat tgttacaaat tcaaactatc caattccctt cctatcttca 180 catgtcattc atttcccgtt tgaatatttc agaggaggaa aaagcatttc attcacaggt 240 tagtacagct gattgggttt gctcagttga cgttggtacc ggtcttatta atagtaatcc 300 tactttggat tttaaggtta cacccaaaac aggagggtca gtttcaatcc tttctgtatc 360 ttgggagaat tcttatccac aactcgtccc aggtcattat ctgttgaggt caggtaattg 420 gccagttagc aacgttaaac tttcaggact attggtccac agatcagtaa agttagaaac 480 aaccaggaaa ttgttggagg cgcaaaaagt tcaaattttg aaccaagtgc aggcagaaac 540 ttccacatcc actagtacca aaggaaaagg agttgttgat atactcaaat cacaagagga 600 ggagatatca aaactcaaag aggagttgtt aaggaaagag aaggaacttt ctgagaggga 660 ttcagagata gccaagctca aacttcaagt gtcaaatttg ccaggcaata atgacatctt 720 ttctggatgg gcggagacac ccccccagta acaaggagca ggaagcagca tcagagcgtt 780 tgatgtcaca aatcacagct gctgtcgaag aaggaaataa aaacatgctc agaaagctgg 840 gtatgggatc atatggattg cttcgaggat ctcaagacaa acaagcaatg gagttatttg 900 atccaaagga tgttgggaaa ataacttctt tgtggaccag ttttaagcaa aaatttgttg 960 agtcaaagga gcatgccaac ttgtttttcc atctatatgg ggtgttattt ttcatggtgc 1020 cacatgtaac aggcggagag ggcagagtta agatatgttt atgttcaagc aatgacccaa 1080 tgaatcctgt gatccaggag aagaccttat ctttggcagg tggggcacaa gcggtcttga 1140 tgagtcctag catcacattg ccatttcttg agagaggacc catgttctat tacactctag 1200 aatgtcaagg aacacaagcc caaattcctt gttcagttgt ggcaatctgg aagcaaaaaa 1260 ttgacgctcg cagcgcaatt tactcacagc aggaaaccat gtcatgggcc attgaagctc 1320 tcaacagacc acaatttttc caggatagac aagaggctgc acaatatatc gcgtctgttt 1380 attcgagtgg gcaaagctca caaatggccc tagagaatag ggcctttgtt ggagaacagc 1440 ttggggatac gcgcatgaat gtagttagtg agagtacaat gtcaagaagt acttcactgc 1500 gaatccccac tctgagagtt caaagcaaac ggtttccttc tctagaaata cctagttctg 1560 ctttgttgca gcaactagag actcgagaag aaactgtaca agatgaggat gatggtggtt 1620 tgtttcccac aaagaaagca tgcagtccca actatagtat aatctgggac aatctgaaca 1680 ttgatacgtt cgtggacatg gaatttccac ctgattggac tgatcgcacg cttgcccaac 1740 aagtgcaata tgtcatgttt acaaaggcct caatgggtaa tgtcatcatt ccaaatcaca 1800 tcacaaaaag ggaactccac aatatcaacc gtgaaaccat aactccagat aactatgaaa 1860 gcatattgaa agaatatggt atcaccaagg ttgggaactt gtctcgaagt gatgactggt 1920 attctttgac tctcaaacaa agggttgtgg accttgtgca ccaacgagat catcagttgt 1980 atatgacagg tgattttacc aatccactgc cgagatttga ctgctatgat ggtttgactc 2040 tggcagaaag gcatatgaga agtatcagag ccagctttgc tacatctggg agcagccaaa 2100 ttagagtagc acagactatt gctactatta agagtagtgc ttccaatgaa ggaaatgtcc 2160 aagattcatt tgtgtctaga acagcaatgg agagcactag tggggaaaaa tctattcaca 2220 tagatacttc ccatagtgaa gaggatgtaa agccagctga tgtaattttt gactttggca 2280 atgatatgga agttggggac gcattggaat tggaaatgca acagccagtg tgtgtggcta 2340 gtaatgaata tttcaatgcg ggggtttttg aatttgtgtg ggaaaagagt gcccatgttg 2400 ctgaacaagt aatggcaata gctttgccag cggccttgtt ttcccagaag aaagagacat 2460 caatgggtgc ccagatgctt aagtattatg atgcagcact cataacctac aaaataattt 2520 tgtatgtttc tggtgttggt gccatatcag gccagcttgc attagtgtgg gatgaatgca 2580 atgtgctaaa tcgcaagaag gaatttgtta atattgcaac actctatgct agcaagcaca 2640 ctttggtatc tgcgtcacaa caaaacagtg ctgagtttat tttcacacca accggaattg 2700 ggaagttcgt gccccttgat gaaggtaccg gagctatgga tcttggaagc gtgagggttt 2760 ttgttaccca tcctctctcc agtgcaactg agttgtcagg tgtaccttgt catttacacc 2820 ttcaatgtaa ggttttatca accaacattc tgcaacctcc gagagtaata gcacaaactc 2880 agtatggaat gaaagcagat cagacatact tcaagagttt cccaactaac caggtactcc 2940 ttcattataa ttggaatact acggctacca tgggaacaac tctagtgagt atcttttcac 3000 catctggcat ttatgaaagt gatggtacgt tgcaaccatc tttacttggc aacatagctc 3060 gcaattgcaa atggtggact ggagtctgtg tgtttgaaat atgcatagaa aagactctct 3120 tccactctgg aagtttggct atagggcttg gcaccctaaa cacaaagatg tcgagtgcac 3180 atgacatatt caatatgcca tatgtggtct gcaatctgga aatgggaaga aagttccaat 3240 tcaaatgtgc catatccaat tggaatggaa agaacttgtt gtcaactggc aggaaaagtt 3300 cgttgccgcg tccaaatcat tactcccatt tgcgcctttt tgccacagtt atgaaacctc 3360 ttgtgtcaac ctcagttcac ctggattcag taggggtcac ggtacaattg aagagaatag 3420 agggtttaac tcttggaggc acagtgtctg tcaagcctat ttatggtcac tggactaaag 3480 gcaaaagtac cgttgatttt ttgttttcag agatgaactt ggagcacaga aaggaaattg 3540 aaaaactccg caaggtaaat gtggaggaat atgacaagaa aggtaaagat aagccaggaa 3600 aagaaggaca gatttcagtt tccattcgtg aaaaattcac ttatggtgcg gtgcagtact 3660 tgtgcatggg ttggaaagat gaagagagat tgctggtttt gccttgtgct ccatggtcaa 3720 tacgatttgc acacaccagt cctgtcaagg aggcaatcac ctgtcctttt atagattggt 3780 gcacctcctt ttgttattgg agtggtagct tacaatattc cattgtattg caccgcgttc 3840 aagcttcagc aaatgttgga gggatattga atgtggcctt agattcctca ggttatcctt 3900 ttccagcagg tatgcattca gggagctatg ttgtatcagc tggaggtggt tcaaagtggg 3960 atttttccta cggtgtttct actaacacct tttcttttgt agtgtcagat gatgagttct 4020 ttccaaggag acacacccga atgcgtgagt tttcaaagaa ccaatcacgc atcatgtcct 4080 tacaggatcg tcttggaaat ttgataataa atcttccgcc aaaggatctc ataagttcca 4140 ttgaaattct tattgctcca ggtccagatt ttaaacttga gatcgcgcag cctccatctg 4200 caaatcatga aaagttcttg ggcaacatgc aaacacacac ctatctctat acccctgatt 4260 tctctgaatt aagagatttc gggggttgag gactaactat aagttatagg agccttgggt 4320 caggcatcac gacccaactt attcagataa tatgtgtact gtaattaata ttatttgtgt 4380 ttagttaggt taataagaag acatagtccc aatttacgga gagtaatgtt cttaattgaa 4440 caagagtccg gcccacttta tgggttccca tgaatctaca tgggcggaga tttgcacgct 4500 tctccttaag tatgtttcgt gtaccctgct tggattgaaa gccctctaca ccagaggtta 4560 aatggtctcg cgtgatggtg taatcgcgtt aaatgatgac acccggggtg tgctttccct 4620 agtaaactca agtacaggtt gtttccctat agaaactatt ctcatgcaga ggctaaatgc 4680 acctggttgg ttgtccaggg tttaagcaac ccgtttgaaa ttcgataatt ttccgtagct 4740 tgcgtcaagc tgtcagtatt aggggtactg atgaagttgt aaaccacctc ttcttcccta 4800 ggttcgtcca gaggtttcaa aggtttatct tctttggcaa gaagcaaaga atgccacgtg 4860 ttgcgtcgac aaagcacctt ttggtatggt taaccaagat tcagcaaata acggagagta 4920 ctgttcttta ttgaatggga gtccggtcca ctttgtggat acccgtgaat ctacatgggt 4980 tagagatttg cacgcctctc tttaaatatg gttcgtgtac cctgcttggc tagaaagcaa 5040 ttgtttggtg ttgtcaacgc gccgcctctg gccaagaaaa caccccttag gctttgttgg 5100 taaagtcaag atgtggagaa ggaatgccag caagcataag cagagtctct tagggtcggg 5160 cttaagatgg cagccagaat tagagccttt gagtatgctt gtgggcatct ggttttcaca 5220 tcaactcgtt tggagtataa acaactcgtg tgatggtgta atcacgtaaa gcaatgacac 5280 ccggggtgtg ctttccctag ttaacgtaag tacaggttgt tctcctatag gaactagagc 5340 gttggtctca actcaaagag agacccgttt gaaaatcgat aaatttccgt agcttgcgtc 5400 aagctgctgt tgttaggggc aacagtgaag aatcatcata cctcttcttc cctaggttcg 5460 tccagaggtt tcagagtgat ggcttctttg tcaagaagta aagaatgaca cgtgttgcgt 5520 cgacaatgca ccgtatggtt tggttagcca taaacatata tattatatta gatagtttta 5580 tctgtgtgtt ctgatgattt gaacttactt tcaattatta gtggcgacag gagaggtttg 5640 tccttttact cttcttgcta tgttggacac aaaaagattt tctttctttt attttaaaaa 5700 aaaaa 5705 //