ID FJ560489; SV 1; linear; genomic RNA; STD; VRL; 7484 BP. XX AC FJ560489; XX DT 26-MAR-2010 (Rel. 104, Created) DT 24-JUN-2010 (Rel. 105, Last updated, Version 2) XX DE Tomato chocolate virus isolate ToChV-G01 segment RNA1, complete sequence. XX KW . XX OS Tomato chocolate virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus; OC unclassified Torradovirus. XX RN [1] RP 1-7484 RX DOI; 10.1007/s00705-010-0640-1. RX PUBMED; 20229114. RA Verbeek M., Dullemans A., van den Heuvel H., Maris P., van der Vlugt R.; RT "Tomato chocolate virus: a new plant virus infecting tomato and a proposed RT member of the genus Torradovirus"; RL Arch. Virol. 155(5):751-755(2010). XX RN [2] RP 1-7484 RA Verbeek M., Dullemans A.M., Maris P.C., Van den Heuvel J.F.J.M., RA Van der Vlugt R.A.A.; RT ; RL Submitted (17-DEC-2008) to the INSDC. RL Biointeractions and Plant Health, Plant Research International BV, P.O. Box RL 69, Wageningen NL-6700 AB, The Netherlands XX DR MD5; 448c4a9eec578aa94bd5720d50ad714a. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..7484 FT /organism="Tomato chocolate virus" FT /segment="RNA1" FT /host="Solanum lycopersicum L." FT /lab_host="Nicotiana hesperis 67A" FT /isolate="ToChV-G01" FT /mol_type="genomic RNA" FT /country="Guatemala" FT /collection_date="2007" FT /db_xref="taxon:626985" FT /culture_collection="DSM:22139" FT 5'UTR 1..135 FT CDS 136..6603 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D4HND9" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:D4HND9" FT /protein_id="ACU01024.1" FT /translation="MAFSKMFSGACKDYRNEHATSSSSFFGELTSSISRFSKAVGNITT FT VSQKISDHLDDLKPSVTDASTSFVSTCSAMERVLNKIGSLIEPFLRAYSFMSTMYKSIK FT DMVLKIFEKLSSSLKLGFQWVLNKAEDSDVIVYSFLVFAIAMLVLLYVCPSDIVGGVTD FT TIRNIFFVVGNTFSSLYKLDWFPKWAERFTMVAQANMLPGESVSHVPTSQLVSSILAFG FT ISTLVFIAVPGRPNGMTNPLSKILYSAGSGATQCNQLFSLYRNMKDCTSQAFSWVLEII FT VSIFGFKNPILSAISATLSTDLFEWMQEVDAVCDPSLRLENFANPAFTEKLNHLREQAL FT KISAYIATHPVAAFLSHRVSASINQLDKIYAENSRHVGVGQYRAEPFMVQWYGASGCGK FT STAMRLFINDVLDCMGEPKLNRLYAVSKRDAYWSNYAHQTAVLMDDMGALRDGAGQCQD FT IKDLIDIKSTQPAPLPMAAVEDKGRHFTSKYIFATSNLVTAPAQCGLTYPDAFERRRDI FT LVECLKDGEFSTDDPTGHLVFNVVESRRPHAITHRRLSYHDLLEYVVAKCRVHAEISSK FT LFSTESGLAGEKVAQVNVNVDDVLDSIDSALLITKQDDVEFPPVIISETDKVLYSQELT FT VEALKFAYQGSLNKEKYFPHDHHKQALFDALSAENKEIFGRWVSDLIYRGADSDQYRWV FT VQNIPSDYLMHFKSFVYATTVCEKKLAVQVELEDGFAHRSLDADVDTLICIEQMPPFVQ FT FLYTAFVRYWCAKVGSAKQESWVKVCYNTILEKIQKAWYDLPYILRLLIKAGLIIIALN FT GAFGAVTAFVSCWQSNSFPSASGKGGVTNESNSISSKKNKGNKQLKNLLVGQSNGDCVK FT DWASEDGFVNQALKKNMVALRLGEGVYFRGTYVCSGWIMTVAHAFHNVRDGTPFTIIHP FT HSRSPVQFNARESRVIEGQDIILLKVGDPDGPKPDIRKHFPYRDDVCFAKGTQGLCCRA FT ISSKDPREGNLEFFRMPVMMSKGYMVKVEYELDSASFKLCANNSYEYHINGENGDCGTL FT LLLPSVKNKQPCIVGIHCASYDEDAAGRGFIASNASAIFREQLEDLPTGPVKTAMVRCE FT LLKSVRNREMQLFDENQVFYLGDVPQELAATVPHKTTLKKSQIFEAFGPAETAPSILSV FT KDKRGNGFDPYVAGVMKYNETAYGFNQDVAELAFETLKSSILPVMRKHRVPGGKPTIRS FT EDVVLNGIDGFDYYDGMELSTSCGYPFNKMGLGLNKREFVEPTGEGDRVLLKRDTPLFT FT AWEEMDVEIRKGNFCELVTTQCAKDERLPLEKIYGKRKTRLFEILPFHYNMLVRKYFLD FT FSAALMALHNSLPCKVGIDPTGSEWSLLANGFRSVSNVGFSADYSSFDGRAPIFAFQWF FT CDLVDIYYGSEPGSEDSNARHSLLMMASCHYTLCENKLFRLVGGMPSGFALTVIFNSLL FT NEFYMRYAFISLLRRPHIAARAIGVKPNDFNQLFIAVYGDDNLVAVPLHLQWYSLPNIA FT AELENVNVIIKNGLDKSMDVNDVVFQDLSELTFLSRGFKRHALGYHLAPLKWVSIVEPM FT YWIRPAPGCPDSAAMLENIETGIRESFHHGRAVYDKLILDVQQVLDDKGFGTIVFPSYM FT EVEQEWIAKVTGDSSALSICEMAKSSLTFTPLAPGETVSDFSMGVHWFTPDIGFCAART FT AAKLEWPDDQVVVNCTGAKKTKWVRGPASWKDFEGKMWPYTMTAILDAQRYKLLQGGHV FT SKTIFVCGNGYAIGPVCAALMALATRQYAIEDIIVRLRTIAGVLNLNTYPGGCAQYLLN FT CVPGMEGKVAQSGARYYSNFMHQGFELGQLRIIHGDISREMALRMPNTVGPQGGWGNLS FT TYNVASFLEQLQSVYESLVLNNASLTIYLKKMTIHDANLILDFIKKQGIFPSQSTVSRL FT KTFVDMELLCYKTKEYSHVVFSKSMLSREWKLHGSQKAASLSAESLFPGKLSASVMSVL FT LEKYKQNMSCKSIELALKIFLLQHEEINENILLKFEHSFGKQIPEALLVKVLFWLSESQ FT LKCKHVWFDFSHRIQHSGIYVEKEGFSLDPYSINMNAADAIFFTLNQHYDQSERKYRVA FT TSLSLRALLFVLVLGWHLGQVESPDLENNYDFLTFKTILTGFKAP" FT mat_peptide 1324..1617 FT /product="helicase" FT /note="motif A to C" FT mat_peptide 4054..4800 FT /product="RNA-dependent RNA polymerase" FT /note="motif I to VII" FT 3'UTR 6604..7474 FT polyA_site 7475 XX SQ Sequence 7484 BP; 2080 A; 1363 C; 1728 G; 2313 T; 0 other; aaaaggatta tttactgaga ttataaccta cgtcgttatt cacagactac gcctctgtta 60 atcagtaata cttttaaatc ttctaaatct tattcttctt ctccttcaaa cttctttctt 120 ccattctcac aagtaatggc tttctcaaag atgttttcag gtgcttgcaa ggattacaga 180 aatgaacatg ctacctcttc ttcttctttc tttggggagt taacaagttc catttctaga 240 ttttccaagg cagttggtaa cattaccacg gtttcacaga agatttcaga tcatcttgat 300 gatctcaagc cttctgtcac agatgcttct acatcctttg tttctacgtg ttctgcgatg 360 gagcgcgttt tgaataagat tggttctctt atagagccat ttcttagggc atattccttc 420 atgtccacca tgtacaaatc aataaaggac atggtactta aaatttttga aaagttgtct 480 tcttccttaa aattggggtt ccaatgggtc ctcaataagg cagaagattc agatgtaata 540 gtttattctt ttttagtttt tgcaattgct atgttagtgt tattatatgt atgtcctagt 600 gatatagttg gtggtgttac agacaccatt agaaatattt tctttgtagt tggtaatact 660 ttttctagtt tgtataaatt agactggttt ccaaagtggg ccgaacgttt taccatggtg 720 gcacaagcca atatgttgcc aggtgagagt gtttctcatg tgcctacttc tcaacttgtt 780 tcttctattt tagcttttgg tatttccact ttagttttta tagctgttcc tggtagaccc 840 aatggaatga caaatccttt atccaaaatc ctatattcag ctggcagtgg ggcaactcaa 900 tgcaaccaat tgttttcgtt gtataggaac atgaaggact gcacttcaca ggctttttct 960 tgggttcttg aaataattgt cagcattttt gggtttaaaa atcccattct ctctgctata 1020 agtgccactt tatcaactga tctatttgag tggatgcagg aggtggatgc tgtttgtgat 1080 ccatcacttc ggctggagaa ctttgctaat ccagccttca cagaaaagct caatcacttg 1140 agggaacaag ccctcaaaat ttcagcatac attgctaccc atccagttgc ggcttttttg 1200 agccacagag tatctgcatc cataaatcag ttggataaga tatatgctga aaattcaagg 1260 catgtggggg ttggccagta cagagccgaa ccattcatgg tacagtggta tggtgccagt 1320 ggctgcggca aatcaacagc tatgaggctc ttcataaatg atgtgcttga ttgcatgggt 1380 gagcctaagc tgaaccgtct gtatgctgta agcaaacgcg atgcttattg gtccaattat 1440 gcacatcaaa cagctgtgtt gatggatgat atgggagctt tgagagacgg agcaggacag 1500 tgtcaggaca taaaggattt gatagatatc aaatctaccc agccagctcc actcccaatg 1560 gcagcagtag aggataaggg tagacatttt acatccaagt atatttttgc cacatcaaac 1620 ttggtcactg ctcctgcaca atgtggacta acttatccag atgcctttga aaggcgaagg 1680 gatattttgg ttgagtgttt gaaagatgga gagttttcta ctgatgatcc aacaggacac 1740 cttgtcttca atgttgttga gagtaggagg ccccatgcca ttacacacag gagattgtca 1800 taccatgacc tcttggaata tgttgtagca aagtgcagag tccatgctga gatctcaagc 1860 aagctgttct ccactgaatc aggattagca ggagagaagg tggcacaagt gaatgtcaat 1920 gtggatgatg ttttggattc cattgatagt gctcttctaa ttacaaagca agatgatgtg 1980 gaatttcctc ctgttatcat ctcggagact gacaaagtcc tgtattcaca ggaacttact 2040 gttgaggcat tgaagtttgc ttatcagggt tcactcaaca aggaaaagta tttcccacat 2100 gatcatcata agcaagcttt gtttgatgct ttgagtgcag aaaacaagga gatttttgga 2160 aggtgggtgt ctgatttgat atatcgtgga gctgacagtg atcaatatcg ctgggtggta 2220 cagaatatac catcggacta tttgatgcat ttcaagagtt ttgtttatgc caccacagtt 2280 tgtgagaaga agttggcagt gcaggtggag cttgaagatg gatttgcaca tagatctctt 2340 gatgcagatg ttgacactct gatctgtata gaacaaatgc caccttttgt gcaatttctg 2400 tacacagctt ttgtgcgcta ttggtgtgcc aaagttggca gtgccaagca agaatcctgg 2460 gttaaagtgt gttataacac tattctggaa aagattcaaa aagcgtggta tgacttacca 2520 tacatcttgc gtttgttgat taaggctggt ctcataatca ttgctctaaa tggggctttt 2580 ggtgcagtaa cagcttttgt ttcctgctgg caaagcaatt cattcccatc tgcaagtggc 2640 aaagggggtg taacaaacga atccaacagt atttcgagca agaaaaacaa aggcaacaaa 2700 cagttgaaga acttattggt tggtcaatca aatggagatt gtgtcaaaga ttgggccagc 2760 gaggatgggt ttgtcaacca ggctcttaag aaaaacatgg ttgcactgcg tttgggagaa 2820 ggggtgtact tcagaggcac ctatgtttgt tcagggtgga taatgacagt tgctcatgca 2880 tttcataatg tacgagatgg aactcctttt accattatcc atccacattc caggtcacct 2940 gttcaattta atgcacgaga atcgcgtgtc atagaggggc aggatattat ccttctcaag 3000 gtgggcgatc ccgatggccc aaaacctgac atacgcaaac attttccata cagggatgat 3060 gtttgttttg caaagggcac ccagggattg tgttgcaggg ccatatcatc aaaggatcca 3120 cgtgaaggca atctagaatt cttccgtatg cctgtaatga tgtcaaaggg ttatatggtc 3180 aaggtagagt atgaattaga ttcagccagt tttaagctgt gcgcaaataa ttcatatgaa 3240 taccacatca atggtgagaa tggagattgt ggtacactgt tgcttttacc tagtgtcaaa 3300 aacaagcaac catgtattgt tggcattcat tgtgcctctt atgatgagga tgctgctgga 3360 cgtgggttta tagcatcaaa tgcttctgca attttcagag aacaattgga agatctacca 3420 acggggccag tcaaaacagc aatggtaagg tgcgaactgc tcaaatcagt tcgaaaccgt 3480 gaaatgcagt tgtttgacga aaatcaagtt ttttatcttg gtgatgtgcc tcaggaattg 3540 gcagccacag tgcctcacaa aacaacactc aagaagagtc agatctttga ggcttttggt 3600 ccagctgaaa cggcaccctc tatcttgtca gtcaaggaca agaggggaaa tggatttgat 3660 ccctatgttg ctggcgtgat gaaatataat gagacagcat atgggttcaa ccaggatgtt 3720 gctgagttgg cttttgaaac actcaagagt tcaattttgc cagtaatgcg caagcacagg 3780 gttccagggg gaaaaccaac catcagaagt gaagatgtgg tcctcaatgg aattgatgga 3840 tttgattact atgatggaat ggaactgagc acgtcttgtg gctatccctt caacaaaatg 3900 ggcctaggac ttaacaagag ggagtttgtt gaacccactg gtgaagggga tagagtttta 3960 cttaaacggg ataccccttt gttcacagca tgggaggaga tggatgtaga gataaggaaa 4020 ggaaatttct gtgagttggt cacaacccag tgtgccaagg atgaacgttt gcccttggaa 4080 aagatttatg ggaaaaggaa aaccagattg tttgagatat tgccttttca ttataatatg 4140 ctggttagga agtactttct tgatttttct gcagcactca tggcacttca caacagtttg 4200 ccctgtaaag ttggcattga ccctactggt tctgaatggt ccttattagc aaatgggttc 4260 aggtctgttt ccaatgtagg gttttcagca gattactcaa gctttgatgg gagagcccca 4320 atatttgcat ttcaatggtt ctgtgatttg gttgatattt attatggttc agagccagga 4380 agtgaggact caaatgcaag gcattcactg ttgatgatgg catcatgcca ttatactctc 4440 tgtgaaaaca agttgttccg attagttggg gggatgcctt ctgggtttgc gctcactgtc 4500 atcttcaact ctctgctgaa tgaattctac atgagatatg cattcatctc cttgttgagg 4560 agacctcata ttgcagcaag ggccataggt gttaaaccca atgatttcaa tcaactcttc 4620 attgctgtgt atggtgatga caacctggtg gcagttccac tgcatcttca atggtattct 4680 ttgcccaaca ttgctgcgga gttggagaat gtcaatgtca taatcaagaa tggcctggat 4740 aaatcaatgg atgtgaatga tgttgttttc caagatctct ctgaactgac atttttgagc 4800 cggggtttca aaaggcatgc attgggatat catttggcgc ctctcaagtg ggtgtccatt 4860 gttgaaccaa tgtattggat tcgacctgca ccaggttgcc ctgattctgc tgccatgctt 4920 gaaaatattg aaacaggaat cagagaaagt tttcaccatg ggcgtgcggt ttatgacaag 4980 ttgattcttg atgtgcagca agtccttgat gataaaggat ttggaacaat tgtttttcca 5040 tcatatatgg aagtggaaca ggaatggatt gccaaagtaa caggtgattc atctgcactg 5100 tctatctgcg agatggcaaa atctagctta acattcacac cattggctcc aggtgaaaca 5160 gtttctgatt tctccatggg tgtccattgg tttacaccag acataggatt ttgtgctgct 5220 cgtactgctg ccaagcttga atggccagat gaccaggtgg tcgtgaattg tacaggggca 5280 aagaaaacaa aatgggtgcg tggtccagca agctggaaag attttgaagg aaaaatgtgg 5340 ccatacacca tgaccgcaat tttagatgca caaagatata aactgttaca aggtggtcat 5400 gtgagtaaga ccatttttgt gtgcggaaat ggttatgcaa ttggaccagt atgtgctgca 5460 ctgatggcat tggcaacacg tcaatatgcc attgaggata tcatagtgcg gttgcgtact 5520 attgctggag ttctcaatct taacacatac ccgggtggtt gtgctcagta tctgttaaat 5580 tgtgtgcctg ggatggaagg caaggtggca caaagtggtg caagatatta tagtaatttc 5640 atgcaccaag gttttgaatt gggacaactt aggattatcc atggagacat ctcaagagaa 5700 atggctttga ggatgccaaa tacagttgga ccacaaggag gttggggcaa tctctccact 5760 tataacgttg catcattttt agagcaactg cagtctgttt atgagagttt ggtcttgaac 5820 aatgcaagtt taacaatcta cttgaagaag atgaccatcc atgatgctaa tttgatcttg 5880 gatttcatca agaaacaagg aattttccca agtcagtcaa cagtttcacg tctcaagaca 5940 tttgtggata tggaattgtt gtgttacaag acaaaagagt acagtcatgt tgtgtttagc 6000 aagtctatgc tttcaagaga gtggaaactc catggttccc aaaaagctgc atctttatca 6060 gctgagagct tatttccagg caaattatca gccagtgtta tgtcagtttt acttgagaag 6120 tataagcaaa acatgtcttg caagtcaatt gaactggctc ttaagatatt tcttcttcaa 6180 catgaagaaa taaatgaaaa catcttgctc aagtttgaac atagctttgg caaacaaatc 6240 ccggaggcac tattggtcaa ggtgttgttt tggttgtcag agagtcagct taaatgtaaa 6300 cacgtttggt ttgatttctc acatcgcatt caacacagtg gcatttatgt tgagaaagaa 6360 ggcttcagtt tggatcctta ttccatcaac atgaatgcag cggatgcaat cttcttcact 6420 ctgaatcaac attatgatca aagtgaaaga aaatataggg tagcaacttc tttgtctttg 6480 cgagccctgt tgtttgttct agttttgggc tggcacttag gtcaagtgga aagtccagat 6540 ttggaaaata attatgattt cttaactttt aaaactattc ttacaggttt taaggcgcct 6600 tgagtcaggc atcacgactc aacttgtgta tataatatgt gtactgtatg taatattata 6660 tatgatgggt ttattagttt tagaaattaa cggagagtac tgttctttat tgaatgggag 6720 tccggtccac tttgtggata cccgtgaatc tacatgggtt agagatttgc acgcctctct 6780 ttaaatatgg ttcgtgtacc ctgcttggct agaaagcaat tgtttggtgt tgtcaacgcg 6840 ccgcctctgg ccaagaaaac accccttagg ctttgttggt aaagtcaaga tgtggagaag 6900 gaatgccagc aagcataagc agagtctctt agggtcgggc ttaagatggc agccagaatt 6960 agagcctttg agtatgcttg tgggcatctg gttttcacat caactcgttt ggagtataaa 7020 caactcgtgt gatggtgtaa tcacgtaaag caatgacacc cggggtgtgc tttccctagt 7080 taacgtaagt acaggttgtt ctcctatagg aactagagcg ttggtctcaa ctcaaagaga 7140 gacccgtttg aaaatcgata aatttccgta gcttgcgtca agctgctgtt gttaggggca 7200 acagtgaaga atcatcatac ctcttcttcc ctaggttcgt ccagaggttt cagagtgatg 7260 gcttctttgt caagaagtaa agaatgacac gtgttgcgtc gacaatgcac cgtatggttt 7320 ggttagccat aaacatatat attatattag atagttttat ctgtgtgttc tgatgatttg 7380 aacttacttt caattattag tggcgacagg agaggtttgt ccttttactc ttcttgctat 7440 gttggacaca aaaagatttt ctttctttta ttttaaaaaa aaaa 7484 //