ID FJ546179; SV 1; linear; genomic DNA; STD; VRL; 2740 BP. XX AC FJ546179; XX DT 28-APR-2009 (Rel. 100, Created) DT 28-APR-2009 (Rel. 100, Last updated, Version 1) XX DE Wheat dwarf virus isolate CZ8100 movement protein (MP), coat protein (CP), DE replication-associated protein (Rep), and replication-associated protein A DE (RepA) genes, complete cds. XX KW . XX OS Wheat dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2740 RX DOI; 10.1007/s11262-009-0352-3. RX PUBMED; 19326201. RA Kundu J.K., Gadiou S., Cervena G.; RT "Discrimination and genetic diversity of Wheat dwarf virus in the Czech RT Republic"; RL Virus Genes 38(3):468-474(2009). XX RN [2] RP 1-2740 RA Kundu J.K., Gadiou S.; RT ; RL Submitted (12-DEC-2008) to the INSDC. RL Department of Virology, Crop Research Institute, Drnovska 507, Prague 6 RL 16106, Czech Republic XX DR MD5; 7a491ff4e7a90247641fc9cf93406d03. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Wheat dwarf virus" FT /host="Hordeum vulgare" FT /isolate="CZ8100" FT /mol_type="genomic DNA" FT /country="Czech Republic" FT /db_xref="taxon:10834" FT misc_feature 1..171 FT /note="long intergenic region; LIR" FT gene 172..444 FT /gene="MP" FT CDS 172..444 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:Q5K2S1" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q5K2S1" FT /protein_id="ACP28887.1" FT /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWRTFVFVSFGLLISVGV FT VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR" FT gene 416..1198 FT /gene="CP" FT CDS 416..1198 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:C3UK67" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:C3UK67" FT /protein_id="ACP28888.1" FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA FT LCVYRYNWLNSDKTNIMVGNTPRIDLITCFAAGKADNNRHTNQTVLYKFNLQGTCYVSD FT SSCMFITPIRVYHWLVYDAEPKQATPDSTDIFTMPWNLLPSSWTVQRAWSHRFVVKRKW FT CVNLVSDGRKVGSKTVDSRYNYVVGKNIVDASKFVKGLRVTTEWMNTGDGKIGDIKKGA FT LYLVTCTRGGITGDSASISFEVVCAYTHACYFKSIGIQ" FT misc_feature 1028..1375 FT /note="short intergenic region; SIR" FT gene complement(1376..2505) FT /gene="Rep" FT CDS complement(join(1376..1788,1875..2505)) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /db_xref="GOA:C3UK68" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C3UK68" FT /protein_id="ACP28889.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALESLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMNTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDVNTAEWGTFIAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVNTYTPEFPIESLMCHETIESWKNDHLYSESPGRHKSIYIC FT GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF FT TVNPKYGKRKMIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAIVHYMYEGESFFAYG FT ENVTASQ" FT gene complement(1711..2505) FT /gene="RepA" FT CDS complement(1711..2505) FT /codon_start=1 FT /gene="RepA" FT /product="replication-associated protein A" FT /db_xref="GOA:C3UK69" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C3UK69" FT /protein_id="ACP28890.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALESLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMNTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDVNTAEWGTFIAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVNTYTPEFPIESLMCHETIESWKNDHLYSVSLESYILCTST FT PADKAVTDLEWMDDYSRSHRDGISPSTSAVRQEQERLPGQDL" FT misc_feature 2506..2740 FT /note="long intergenic region; LIR" XX SQ Sequence 2740 BP; 684 A; 598 C; 757 G; 701 T; 0 other; accctgcgtg gtgggtcccg aggcgcactc ggcttttcgt gagtgcgccg aggcttttgg 60 accacgtctt tatgtcatca ctcgaataat tggtggtgag tcatcaccct ttgcacctgc 120 aattatgtgc catcgcttag cttataagga agtgtcgggg aaggtatctc gatggatcag 180 gtctttacac cgccgcgttc tatacgggca gatcaatacc aggcccctta cgatcccggg 240 tcctccgact acgcctggcg aacctttgtg ttcgtctcct tcggtttgtt aatatccgta 300 ggagttgttt ggttggctta cactctgttc ttgaaggact gcatattagt gtggaaggcg 360 aagaagcaga ggaggaccga ggaaattggt tacggtaata caccggccag accaaatggt 420 gaccaacaag gactcccgag gtaagggaaa gaggaagctc gaggagggcg aatcgagtgg 480 aaggtggaag gggcaagtgt ataagcggcg taagcagacc tacaaggtag tacctgtgag 540 gccacccgcc ctgtgtgtgt accggtataa ctggctcaat tcggacaaga ccaatatcat 600 ggtgggtaac acccctcgga ttgatcttat tacctgcttt gcagcgggca aggccgataa 660 taatcggcat acaaatcaga ccgtcctcta caagtttaac ctgcagggga cctgttacgt 720 gtcggactcc tcatgtatgt tcataacccc aatcagggtt tatcactggt tggtctatga 780 tgcagagccg aaacaggcta cgcctgactc cactgacatc tttacgatgc cgtggaatct 840 tctgccgagt tcatggactg tgcagagggc ttggtcgcat cgattcgtgg tgaagaggaa 900 gtggtgcgtg aacctggtct ccgatggaag gaaggttgga tccaagacgg tggactcccg 960 ctacaactac gtagttggga agaatattgt tgacgcctcc aagttcgtca agggtttgcg 1020 cgttacgacg gagtggatga acacgggtga cggcaagata ggcgatatta agaagggtgc 1080 cctgtattta gtaacctgta ctcgtggagg aatcactggg gacagtgcct ccatttcatt 1140 tgaagttgta tgtgcctata cgcacgcgtg ttactttaaa tccattggga ttcaataaat 1200 aaaatactat tttattcatc tcatgtcatt cgattacaga tgctcggctg cgagcagaga 1260 taaaacaaac tatggaaggc cgcctcgggc ttaagaccga gtcgctgccg gagtgaaata 1320 caaaaatcga aaaaacatta tttatcggaa attgtagccg tccgcgctag gacagtcact 1380 gcgaagctgt gacattttcg ccgtaggcga agaatgattc accctcatac atataatgaa 1440 caatagcgtt agagtacatg taatccgact gttcgggagt catatccttg agccaatctt 1500 cgtctgggtt cactagaatg atgcaaggta taccaccccg tatcattttt cgcttcccgt 1560 acttaggatt gacggtgaag tcacgctgag ctccgacgaa gcacttccag ttgggtgtga 1620 acttgaatgg aatgtcgtca attatgttgt acttggcgtt gacgtcatag gtcgtgaaat 1680 caactaggct gttgtagtag ttgtggatcc ctagagatct tgcccaggaa gtctttcctg 1740 ttcttgtcgg accgcagatg tagatggact tatgccgtcc cggtgactcc tggaataatc 1800 gtccatccac tctaaatcag ttacggcctt atccgcagga gtggaagtac aaaggatgta 1860 tgattcgagg cttacggagt atagatgatc atttttccag ctttcaatgg tctcatgaca 1920 catgagggac tcgataggaa actcaggtgt gtaagtgtta actgggtctg ggaataagtg 1980 gcgtgccgtg tactcgaagt ctttcagacg gatagaccat tcaaacggaa aacgatggca 2040 gaccatgctg agaaattcct ctctcgaggt actcgactca atgatctgtt tcatatccgc 2100 gtcacggtct ttacgacccg gagtggtaac tgctatgaat gttccccact cagccgtgtt 2160 gacatcggag tcaacctcct tcgtgatgta atcacgaact tggttgcagt ctttggcagc 2220 ttgaatatta ggatggaata tagaaaatgg agaggtgttc atacgaaggt ttagggcgtt 2280 gggattggtg atcgaagcac gaagcttgtt ttgcacgagt acgtgcagat gtggtgatcc 2340 atcttcgtga agctcacgaa ctgcagcgat gtagagaggc tcatatttgg ccaagagagt 2400 gcgaagagac tccaaggcgt actgtggttc aaggatgcat tgaggatatg ttaggaagag 2460 gtatttggaa tagacacgga acctgggtgc agatgaagaa gccatagtag caagcagaag 2520 cccggcaggt ccttagcgaa aaaacggggt gtgcactcga actctactct ctaccctgcg 2580 tggccgtgtg cagaattcac acggttggca tcggtgtcca cggtttaaat aatgcaggat 2640 taggtgggaa cgcgggaccc tgtctttccc gcgcgatagc gacgggtggt cccgagtgtg 2700 gtttgcggct cggggacccg ccacgcagga atctaatatt 2740 //