ID FJ545686; SV 1; circular; genomic DNA; STD; VRL; 2927 BP. XX AC FJ545686; XX DT 03-FEB-2009 (Rel. 99, Created) DT 01-MAY-2014 (Rel. 120, Last updated, Version 3) XX DE Beet curly top virus isolate LRME27607, complete genome. XX KW . XX OS Beet curly top virus OC Viruses; Geminiviridae; Curtovirus. XX RN [1] RP 1-2927 RX DOI; 10.1007/s00705-009-0320-1. RX PUBMED; 19198754. RA Lam N., Creamer R., Rascon J., Belfon R.; RT "Characterization of a new curtovirus, pepper yellow dwarf virus, from RT chile pepper and distribution in weed hosts in New Mexico"; RL Arch. Virol. 154(3):429-436(2009). XX RN [2] RP 1-2927 RA Lam N., Creamer R.; RT ; RL Submitted (12-DEC-2008) to the INSDC. RL Department of Entomology, Plant Pathology, and Weed Science, New Mexico RL State University, 945 College Ave, Las Cruces, NM 88003, USA XX DR MD5; 5f1ae0e1f1e34a0d21a03e96427adff7. DR EuropePMC; PMC3818925; 19198754. XX FH Key Location/Qualifiers FH FT source 1..2927 FT /organism="Beet curly top virus" FT /host="chile pepper" FT /isolate="LRME27607" FT /mol_type="genomic DNA" FT /country="USA:New Mexico" FT /isolation_source="leaf" FT /collection_date="06-Jul-2001" FT /db_xref="taxon:10840" FT gene 159..482 FT /gene="V4" FT CDS 159..482 FT /codon_start=1 FT /gene="V4" FT /product="V4 protein" FT /db_xref="GOA:B9VGY6" FT /db_xref="UniProtKB/TrEMBL:B9VGY6" FT /protein_id="ACM44485.1" FT /translation="MDLGGKLPEEVFIPAPFFDLVKKVADILFEIKLKVDHCGDYSKLA FT VQVWNYFYLNTLYEYVYVFINDGLFTRLVIFAIYLQYSTAIRYELLWDLSEWINFQTII FT QPF" FT gene 355..621 FT /gene="V3" FT CDS 355..621 FT /codon_start=1 FT /gene="V3" FT /product="V3 protein" FT /db_xref="InterPro:IPR009997" FT /db_xref="UniProtKB/TrEMBL:B9VGY7" FT /protein_id="ACM44486.1" FT /translation="MMVCLPDWLFLLFIFSILLQSGTNFYGTFQSGSISRQLSSLSSSI FT DQLFLKIQQVVYTRYPSRDRGSDPRRRRGLSAIPEGSEEATEA" FT gene 431..811 FT /gene="V2" FT CDS 431..811 FT /codon_start=1 FT /gene="V2" FT /product="V2 protein" FT /db_xref="InterPro:IPR009931" FT /db_xref="UniProtKB/TrEMBL:B9VGY8" FT /protein_id="ACM44487.1" FT /translation="MGPFRVDQFPDNYPAFLAVSTSCFLRYNRWCILGIHQEIEALTLE FT EGEVFLQFQKEVKKLLRRKVNFHRKCALYEEIYKKYVHNVTEEKGESSKCVAEEEEDYY FT DFEEVPMEETCDQKQDPEVKDV" FT gene 651..1415 FT /gene="V1" FT CDS 651..1415 FT /codon_start=1 FT /gene="V1" FT /product="V1 protein" FT /note="capsid protein" FT /db_xref="GOA:B9VGY9" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B9VGY9" FT /protein_id="ACM44488.1" FT /translation="MRRYTRNTYTMSQKRKVNLQSAWPKKRRTTTTSRKYQWRRPVTKN FT RTLKLKMYDDMLGAGGIGSTISNNGMITMLNNYVQGIGDSQRANNVTVTKHLKFDMALM FT GSSPFWETPNYMTQYHWIIIDKDVGSVFPDKLATIFDIPDNGQAMPSTYRIRRDMNERF FT IVKKKWTTHLMSTGTGYGGKDTYKAPSMPNYKKAMNINVRNLNVRTIWKDTGGGKYEYV FT KENAIIYVVVNDNTDNTNMYATLFGNCRCYFY" FT gene complement(1432..1842) FT /gene="C3" FT CDS complement(1432..1842) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:B9VGZ0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B9VGZ0" FT /protein_id="ACM44489.1" FT /translation="MNVIRDFRTEEPITLQQATNSIPVDLVPNPLYLKLQDFFRSGPVY FT QLKVQMRFNHNLRKSFNLHKCWIDLTITGSHRTLTGDRFLKVLKNRVDRDIDNLGSLSI FT NIVIRGLNHVLYYVFNFVESVIQNTSIAMKLY" FT gene complement(1550..2071) FT /gene="C2" FT CDS complement(1550..2071) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B9VGZ1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B9VGZ1" FT /protein_id="ACM44490.1" FT /translation="MENHVSLKVVFPVLYYAIQGKAALTRTSSINQKMKPLGPGHYKIQ FT SSPNSPVLSLITIKKRPRKINLPCKCHFTIHHECNQGFSHRGTHHAATSDEFHTRGLGT FT ESIVPQTPGLLPFRASLSTQSPDEIQPQPPQIVQSSQVLDRFDDHWITQDIDWGPFFES FT LEEPSRQGHR" FT gene complement(1863..2927) FT /gene="C1" FT CDS complement(1863..2927) FT /codon_start=1 FT /gene="C1" FT /product="C1 protein" FT /note="replication-associated protein" FT /db_xref="GOA:B9VGZ2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B9VGZ2" FT /protein_id="ACM44491.1" FT /translation="MSFYKKAKNFFLTYPRCSVTKEDALEHLLAIPRPSNKKYIRVSRE FT LHEDGALHLHALIQFKGKAQFRNPRHFDITHPSNSTTFHCNIQGAKSSSDVKSYIGKDG FT DYIDWGTFQIDGRSARGGQQTANDAAAEALNAGTAAEALQIIREKLPEKFIFQYHNLKP FT NLEAIFLPPPDIYQPPFPLSSFTRVPEIIQEWADSYFGVDSAARPFRYNSIIIEGDSRT FT GKTMWARSLGPHNYISGHLDFSLKTYNDDVLYNVIDDVDPNYLKMKHWKHLIGAQREWQ FT TNLKYGKPRVIKGGIPSIILCNPGEGSSYQDFLDKSENEALRSWTLQNSVFAKLTGPLF FT DNNQEASSQDQSSL" FT gene complement(2525..2788) FT /gene="C4" FT CDS complement(2525..2788) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B9VGZ3" FT /protein_id="ACM44492.1" FT /translation="MKMGLCISTPSSNSKVKHNSETPDTSTSLILPIAPPSTAIFRELN FT PVPMSSPTSERTVITSTGVHFRSTEDLLEEASRRLMMLQQRH" XX SQ Sequence 2927 BP; 866 A; 512 C; 659 G; 890 T; 0 other; attgaatcgg ggtctcttca aaacccctat gaattgggtg ctttgggagc tcttatatac 60 cgccaagggg ccatccgcaa taatattacc ggatggcccc gaaaaaatac gtggcccaat 120 gaaaatatgc cacgtggaaa gctaaagatg ttgatgtgat ggatttgggc gggaaacttc 180 ctgaagaagt tttcattccc gccccttttt ttgacttagt caaaaaagta gccgacatat 240 tatttgaaat aaagttaaaa gtagatcatt gtggtgacta ttcaaaactt gctgtgcaag 300 tttggaatta tttctactta aatacgctat acgaatacgt atatgtattt ataaatgatg 360 gtctgtttac cagactggtt atttttgcta tttatcttca gtattctact gcaatcaggt 420 acgaactttt atgggacctt tcagagtgga tcaatttcca gacaattatc cagcctttct 480 agcagtatcg accagttgtt tcttaagata caacaggtgg tgtatactag gtatccatca 540 agagatagag gctctgaccc tagaagaagg cgaggtcttt ctgcaattcc agaaggaagt 600 gaagaagcta ctgaggcgta aggttaattt tcataggaag tgtgctttgt atgaggagat 660 atacaagaaa tacgtacaca atgtcacaga agagaaaggt gaatcttcaa agtgcgtggc 720 cgaagaagag gaggactact acgacttcga ggaagtacca atggaggaga cctgtgacca 780 aaaacaggac cctgaagtta aagatgtatg atgatatgct gggtgctggt ggaataggat 840 ctaccattag taataatggt atgatcacta tgttgaataa ttatgtccag ggtattggtg 900 atagtcagag agcgaataat gtgactgtga cgaagcactt gaagtttgat atggctctta 960 tgggcagttc tccgttctgg gagactccta attatatgac tcaatatcat tggattatca 1020 tagacaagga tgttgggtca gtgtttcctg ataagttggc tactatattt gatattcccg 1080 ataacggtca ggctatgccc tcaacgtatc gtattcgaag agatatgaac gagaggttta 1140 ttgttaagaa gaaatggaca actcatttga tgtctactgg tactggatat ggagggaagg 1200 atacttacaa ggctccttca atgccaaatt acaagaaagc tatgaatatc aatgtccgca 1260 atctgaatgt gaggactatt tggaaagata ccggtggtgg caagtatgaa tacgtcaagg 1320 agaatgctat aatttatgtt gttgttaatg ataataccga caatacgaat atgtatgcca 1380 ctttgtttgg caattgtaga tgttacttct attaataaaa atattatttt tttaatacaa 1440 tttcattgca atactagtat tctgaattac actctcaaca aaattgaata cataatacaa 1500 tacatgattt aaacctctaa ttacaatatt aatagagaga gaacctaaat tatcgatgtc 1560 cctgtctact cggttcttca agactttcaa aaaacggtcc ccagtcaatg tcctgtgtga 1620 tccagtgatc gtcaaatcga tccagcactt gtgaagattg aacgatttgc ggaggttgtg 1680 gttgaatctc atctggactt tgagttgata aactggcccg gaacggaaga agtcctggag 1740 tttgaggtac aatggattcg gtaccaagtc cacgggtatg gaattcgtcg cttgttgcag 1800 cgtgatgggt tcctctgtgc gaaaatccct gattacattc atgatgaatt gtgaaatgac 1860 acttacaagg aagattgatc ttgcgaggac gcttcttgat tgttatcaaa gagaggaccg 1920 gtgagtttgg cgaagactga attttgtaat gtccaggacc taagggcttc attttctgat 1980 ttatcgagga agtcctggta agagctgcct tcccctggat tgcataatat aatactggga 2040 ataccacctt taatgacacg tggttttcca tactttaagt ttgtctgcca ctctctttgt 2100 gcgccaataa ggtgcttcca atgcttcatc tttaagtaat tgggatcaac gtcatcaatg 2160 acgttataca atacatcatc attataagtt tttaaactaa aatctaaatg ccctgatatg 2220 taattgtgtg gacctaaaga tctggcccac atagtcttac cagttcttga atcaccctct 2280 atgattatac tattatatct aaaaggccgc gcagcggaat caacaccaaa ataagaatcg 2340 gcccactcct gaataatttc tggaacccga gtgaaagaag aaagaggaaa ggggggttga 2400 taaatatctg gaggaggaag aaaaatggct tctaagttag gcttaaggtt gtgatactga 2460 aaaataaatt tttctgggag tttctccctt attatctgca gagcttctgc tgcagtacct 2520 gcatttaatg cctctgctgc agcatcatta gccgtctgct ggcctcctct agcagatctt 2580 ccgtcgatct gaaatgtacc ccagtcgatg taatcaccgt cctttccgat gtaggacttg 2640 acatcggaac tggatttagc tccctgaata ttgcagtgga aggtggtgct attggaagga 2700 tgagtgatgt cgaagtgtct ggggtttctg aattgtgctt tacctttgaa ttggatgagg 2760 gcgtggagat gcagagcccc atcttcatgt aattccctgg agactctaat atatttttta 2820 ttcgaaggtc taggtatagc taggagatgt tctaaggcgt cttctttggt tactgaacat 2880 ctagggtatg taaggaaaaa attcttggct tttttgtaaa aagacat 2927 //