ID FJ542305; SV 1; linear; genomic RNA; STD; VRL; 7914 BP. XX AC FJ542305; XX DT 24-MAR-2009 (Rel. 100, Created) DT 09-APR-2009 (Rel. 100, Last updated, Version 2) XX DE Tomato infectious chlorosis virus isolate TICV-SP5131 segment RNA2, DE complete sequence. XX KW . XX OS Tomato infectious chlorosis virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-7914 RX DOI; 10.1007/s00705-009-0354-4. RX PUBMED; 19288051. RA Orilio A.F., Navas-Castillo J.; RT "The complete nucleotide sequence of the RNA2 of the crinivirus tomato RT infectious chlorosis virus: isolates from North America and Europe are RT essentially identical"; RL Arch. Virol. 154(4):683-687(2009). XX RN [2] RP 1-7914 RA Orilio A.F., Navas-Castillo J.; RT ; RL Submitted (11-DEC-2008) to the INSDC. RL Virology, Estacion Experimental La Mayora - CSIC, Algarrobo-Costa, Malaga RL 29760, Spain XX DR MD5; 2af0180230460ed552c405e605f44629. XX FH Key Location/Qualifiers FH FT source 1..7914 FT /organism="Tomato infectious chlorosis virus" FT /segment="RNA2" FT /host="Solanum lycopersicum L. (tomato)" FT /isolate="TICV-SP5131" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="May-2001" FT /db_xref="taxon:52135" FT 5'UTR 1..585 FT CDS 586..687 FT /codon_start=1 FT /product="p4" FT /note="small hydrophobic protein; ORF1" FT /db_xref="GOA:C0K277" FT /db_xref="UniProtKB/TrEMBL:C0K277" FT /protein_id="ACN87736.1" FT /translation="MAVVFYLLCLFIIIILFTCRISIKNIHSVQHRF" FT CDS 712..2376 FT /codon_start=1 FT /product="Hsp70h" FT /note="heat shock protein 70-like protein; ORF2" FT /db_xref="GOA:C0K278" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:C0K278" FT /protein_id="ACN87737.1" FT /translation="MDCKIGLDFGTTFSTISAYVNGKMFELPLNNTTYISTCIAITSNS FT DAVIGGAAEILSSDVSPHCFFYDLKRWVGVDEKSFDVAKKKIKPKYSVELKGSEVYITG FT INKGYSATLSVRQLIKAYIETIVKLFAKTFNLQIRDLNQSVPADYKCAQRLFARSVLNS FT LSFPCRRIINEPSAAAVYCVSRYPEYDYFLVYDFGGGTFDVSLIAKYKKYVTVVDTEGD FT SFLGGRDIDMSIDNYLKTKYKLSGNIPAVFLALIKEECNTLGKSSFTVILDNGSTAVIE FT FSPEELRACVVPFAEKSVEILNRVVSRNGLTTGVVFLVGGSSLLKPVQSVVKQYSTQIG FT LTVLIDENMRSAVSYGCSLSHSLEDSGNIIYIDCNSHPLSDLSFNCDPSVVVRKPMSIP FT YKQTMPRKHERQVHTEVNIYEGSDLFCLNNDWLISSKLTSTDYAKVGEPYSIIYEYTID FT GIIELSIKNEVTGVISKLKNSFEKSSTIEKLELNLTQLSNVDELCTVIALLSYRKKELN FT KLAKLFNIPNMLIQASKNYGDFKILYSMLSRDNSNFK" FT CDS 2376..2537 FT /codon_start=1 FT /product="p6" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:B4YNS5" FT /protein_id="ACN87738.1" FT /translation="MLVILVLSDSGRYITHYFSDRSDFSGEELIIFSEDISIVIDLILK FT CPYHKQSW" FT CDS 2531..4084 FT /codon_start=1 FT /product="p59" FT /note="putative movement protein; ORF4" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:B4YNS6" FT /protein_id="ACN87739.1" FT /translation="MVIMTEDRKAILFFQTLLKKSNVFEEMTEVNNYIKGNLRLVNSNR FT YPSMSRGAPFYFDSEYYLSGGNVVVYPDSHNTYLKLLVVYLDKCYKNYTKKTGYPGKSL FT LTIRDYGSYISRWSDYHDKSITDYLTHNPGVGCVFTNEDISNAYPNQSEITKRILYRIS FT NSIGHMPSLNEFEKSELSSFAIETERDAPVVQNDSNTSQFFKECVNTLRTYLAYSGSSI FT GKAKLDSTKVSYDIFIESLSGDFDRESLKTNPLAISKFMQLYTKIGGNSETFKDKFNTL FT KLMSNPFREFCERAFKINVNSSKDVLYEKIPREKTSDILADVDMFSRILVRTSDYKIES FT NNNTLNSVIDTIVTEALKLFFPRMKGLYPLEIELAFLHYFALSTTNSKRRGDKRKNVIS FT INGEEVQISMNDICNRVDSILREAGAFQSGINYVRKWANKRGHIALNHFKNNRTKLYLF FT SDYPKLLPYMRFDYFKALDIELLTEEERLSLNTLRLITEDKSSHSNDTRADLLSWTLRY FT " FT CDS 4066..4308 FT /codon_start=1 FT /product="p9" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:B4YNS7" FT /protein_id="ACN87740.1" FT /translation="MDFEILIKEKSPEIFSVYVNYIINSYYNGLGPTSDLLDLINKNFL FT TFSSRECEIDSCIEDFDIKYYFRCLEYCKNGKLIW" FT CDS 4289..5080 FT /codon_start=1 FT /product="coat protein" FT /note="CP; ORF6" FT /db_xref="GOA:B4YNS8" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:B4YNS8" FT /protein_id="ACN87741.1" FT /translation="MENLSGNANYDETNTSRVNSDGIGSHMEHDDDDRSVNGPPSDEIN FT NHTTRSVHGRDHTSGNIGDYSKADLNRIMVKVSRPDAMSESDSNLYKEVIVEYLKNNCT FT GGAEPDKVLVVAFFVALCQYALNSGTSVKAISDRTVDLSFGYDNQKYTVKAGHFLSYAQ FT SRTSGHPNALRRFMRSSLETVKQLQDVGLIYSNGVVAAKHGVVKEFRNSYADFDTGHLD FT RMSNDDLAALMLAKCHALKKSEGNSRTIYNTVQLADMKHPC" FT CDS 5088..7049 FT /codon_start=1 FT /product="CPm" FT /note="minor coat protein; ORF7" FT /db_xref="GOA:C0K283" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:C0K283" FT /protein_id="ACN87742.1" FT /translation="MMEEEISLENRAVKDGLSFNVNIGDKFDREVNLSINLDRVKHFGY FT SYVFVCIGDSSNRYQLGWENITKSSLSFNHLKNGKYENDFSLMRSFTVDFDNNMVVNIR FT LVNNKLAVSQGGRMTNVLCDLPSSLKVELWISFSLDIGNKYVKGKSAIKSVDCSNLISK FT RLVDGVVPQLTSTHSFLKIGSDTSSIKPVKNDVLIEKIKTFEDILVAAVEDHKDIEEDR FT SKYELPDVTSEFQQEDKIKQVRLYDVLDCGGKSFSTLTINAKFKPFKFVDMVNLLQLWY FT GDSKSNNLELLIRYDESQRDRLTLQLMYTKNGRWRMFEEKKVTLDEQQLNKDDGSISFG FT LRKTKNTYVVVHNRKTLYSFDHAIRNNSLKVGFEFQIPVIIFQKYSSETLNRPVGYGKI FT VEILIDGIPIKYNSNLMLEDNSNINIMNMKTLDTISSDDAKNVREMFSRKRDPDQENNN FT VEIVDIDKPNEKNRPSLICQNFIGEISDNYLRSLRNKCEKKLEGLGVPKNLTFQVLCQL FT SMTFSTSRECASKQDQFLKVITSDNKSSIVVNKKDVYQSIEKDIMTHRKYNLERMMLRE FT SSKEVLDLLREGKLTVNSRTALKLGFLSEKSYLCCDFLDYNRVLLTEVEKSAVSLSLNK FT LSNLNKSKRTLVNVSQIT" FT CDS 7049..7735 FT /codon_start=1 FT /product="p26" FT /note="ORF8" FT /db_xref="UniProtKB/TrEMBL:C0K284" FT /protein_id="ACN87743.1" FT /translation="MDSPPRFVSVDKNEENDVILNFNSNFWRVYSALSNDAIMTWDELY FT MFKQLCLSLLTECESLPNNLILYHTNTMPHEILGSRRINDTDIDLHSSRYFQNVTKQVV FT RFLLEDYLIIINMKLHMKKGLLDVLDVDDILRMIKSTNLEVLKSIVLSYICSSFGECKL FT YCRHLSIIFEEDHRLKSLLKLFKKNKSLTSKEIGVIRATINNGIIGKFTIKRSFGFGIP FT FENINL" FT 3'UTR 7736..7914 XX SQ Sequence 7914 BP; 2699 A; 1210 C; 1625 G; 2380 T; 0 other; ggtaataact ttaccaaatt ttcgtccaag gcgagacagc cgaaaacgtc tataaaatga 60 agttgttgcc aagttcgctt ctatgacctt aaatggagtg ggcattgtaa atatgtaaat 120 aggtaaatat tgtatatagt atacgttttt ctttttcttt tatagatagg acaagtaccc 180 gaaacagaac ggaacgaaac taaactaaac gaacctgaaa agttcaagtt ttaggtattt 240 ttctctgttc tgttaaccat atggctgccc agaggtgttg tatatagata aacgtctggt 300 cgtggcaatt ttcagttgtt tgtgagagta aaaaatttaa gatctttatc tcaaatggta 360 gatagtaagt cgaaataaag ttagttaata tttttagatt catattttag tgattaaatt 420 ccacgagttt gaaatcgcgt tagagaaata aaaattaaga aacatttctt tgtacttatg 480 ttcattcaag tttattaaat aaaaataaaa aatttttcat ttcaataaat aaaccacgtc 540 actggattgg tgttgttaca cggagtgtct caaactaact agaatatggc agtggtgttt 600 tatttgcttt gcttatttat aataataatt ttgtttacgt gcagaataag cataaaaaat 660 attcattcag tacagcacag gttctgactt tatagtgcgt tattagagat catggattgt 720 aaaatagggt tagattttgg tactactttc agtactatca gtgcgtacgt taatgggaag 780 atgtttgagc ttcctttaaa taacacaaca tatatctcca cctgcatcgc tattacgtct 840 aacagtgacg ctgtaattgg gggtgctgca gagattttgt ctagtgatgt ttccccacat 900 tgtttctttt acgatctaaa aaggtgggtc ggagtcgatg agaaatcttt cgacgtagca 960 aaaaagaaaa taaaaccgaa atattcagtg gagttgaaag gttccgaagt gtatattacg 1020 ggaattaata aagggtacag cgccactctg tccgtcaggc aattgattaa ggcttacata 1080 gagaccatag ttaagttgtt tgcaaagact ttcaatctgc aaatcaggga cttaaatcaa 1140 agtgtacccg ctgactacaa gtgtgcgcaa aggttgtttg caaggtctgt actcaattct 1200 ttatcgtttc catgcaggag gataataaac gaaccatctg ccgctgctgt atactgtgtc 1260 agtcgttatc cggaatacga ttatttcctt gtatacgact ttggaggagg tactttcgac 1320 gtatcattaa tcgctaaata caagaaatac gtgactgtgg tagacactga gggagattct 1380 ttcttaggag gtcgtgatat cgacatgagt atagataatt acctaaaaac taagtacaaa 1440 ttgagtggca atatacccgc tgtgttttta gctttaataa aagaagaatg taacactctg 1500 gggaaatcta gttttactgt aatattagat aatggtagta ctgcagttat tgaattctct 1560 cccgaagagt tgagggcttg cgtggttccg tttgcagaaa aatcagtgga aattttaaat 1620 agagttgtgt ctagaaatgg cctcaccacc ggagtggtat tcctagtagg aggttcttcc 1680 ttgcttaaac ctgttcaatc ggtagtcaag caatattcca ctcagatagg tctaaccgtt 1740 ttgatcgacg aaaatatgag aagtgctgtg tcgtacggtt gttctctgtc gcattcgttg 1800 gaagacagtg gtaatattat ttacatagat tgcaactctc atccgttgtc agatctatca 1860 ttcaattgcg atcctagcgt cgtagttcga aaacctatga gtataccata taaacaaacc 1920 atgccaagaa aacatgagag acaagttcac acagaagtta acatatacga aggatcagat 1980 ttgttttgtc taaacaatga ttggttgatc agcagtaaac tgacgtctac agactatgct 2040 aaggttggag aaccttacag catcatatat gagtatacta tcgatggaat tatagaattg 2100 agcataaaga atgaagtgac cggggtgata agtaagttga aaaacagttt cgaaaaatcc 2160 agtacaatag aaaaattaga actgaactta actcaattgt ctaatgtgga tgaattgtgc 2220 actgtaatag ctttgttgtc ttaccgtaag aaagaactta acaagttagc gaaattgttt 2280 aacattccaa acatgctgat acaggcaagt aaaaattatg gtgatttcaa gattctctat 2340 tctatgttgt caagggacaa tagtaatttc aagtgatgtt agtgatttta gtacttagtg 2400 attcaggaag atatataact cattactttt cggacaggag cgatttcagt ggggaagagt 2460 tgatcatttt tagtgaggac atcagtatcg tgatagatct aattctgaag tgcccgtacc 2520 acaagcaatc atggtgataa tgacagaaga cagaaaggcc attctatttt ttcaaacgtt 2580 actgaaaaag tcaaacgtgt ttgaagagat gacagaagtt aataactaca taaaaggtaa 2640 tttgagattg gttaacagta atagatatcc gtctatgtct aggggagcac ctttttattt 2700 tgattcggaa tattacttga gtggtggtaa cgtagtagta tatccagatt cacacaacac 2760 ttatctcaag ttgttggtag tgtacttaga taaatgttat aaaaactaca ccaagaaaac 2820 tgggtacccg ggtaagagtc ttttgacgat tagagactat ggttcttaca tctctcgatg 2880 gagtgactat catgacaagt ctatcactga ttatctgact cacaaccctg gtgtcgggtg 2940 tgtgtttacc aatgaggaca tatcaaacgc ttatcccaat cagagtgaga taacaaagag 3000 aatcctgtac aggatcagca attccatagg tcatatgcct agtttaaatg aattcgagaa 3060 atccgaattg agttcttttg ccattgaaac ggagagagat gcccctgttg ttcaaaatga 3120 ctcgaacaca tctcaattct tcaaggaatg tgtgaacact ttgcgtactt atctagcgta 3180 ttctgggagt agtataggga aggcaaaatt ggattcgact aaggtgagtt atgatatatt 3240 catagagtct ttatctggcg atttcgatag agaatcattg aaaaccaatc cactcgccat 3300 atccaaattc atgcagttgt acacaaaaat tggtggtaat agtgaaactt ttaaagacaa 3360 attcaacact ctcaaactga tgagtaatcc atttagagaa ttttgcgaga gggcgttcaa 3420 aataaacgtc aatagtagta aggacgtgtt gtatgaaaag atacctagag agaaaacttc 3480 agatatcttg gcagatgtgg acatgttttc tagaatattg gttagaactt cagactataa 3540 gatagaatcg aataacaaca cattaaattc ggtcatagat acaatcgtca cagaagcatt 3600 gaaattgttc ttcccgagaa tgaaaggatt atatccccta gagatagaat tggcgttttt 3660 acactatttt gctttaagta ctactaactc aaaaagaaga ggtgataaga gaaagaacgt 3720 tatttctata aacggtgaag aagttcagat atctatgaat gatatttgta atcgagttga 3780 ttctatttta agggaagctg gtgcatttca gagtggtatc aattacgtga ggaagtgggc 3840 taataagaga ggacatattg ctttgaatca ttttaaaaac aatcgcacaa agttatatct 3900 gttttctgac taccctaagt tgttgcctta catgcgattc gattatttca aggcgttgga 3960 tatcgaatta cttacagaag aagagaggct ttctttaaac actttgaggt tgattaccga 4020 agataaaagc tcgcattcga acgacactag agcggatttg ttgtcatgga ctttgagata 4080 ttgatcaaag aaaaatctcc tgaaattttt tcggtttacg tcaattacat aattaatagt 4140 tattataacg ggttaggtcc tacgtccgat ctgttagatt tgattaataa gaattttttg 4200 acgttttcat cgagagagtg tgagattgat tcgtgtattg aagatttcga tataaagtac 4260 tactttcgtt gtttagaata ttgtaaaaat ggaaaactta tctggtaatg caaactatga 4320 tgaaactaac accagtcgtg tgaactctga tggaattgga agtcacatgg agcatgatga 4380 tgatgacagg tcagtcaacg gacctccaag tgatgagata aacaatcata ctacgagatc 4440 tgttcatggt agagatcaca cgtcaggtaa tataggagat tactcaaaag ctgacttgaa 4500 tagaattatg gtcaaagtca gtagaccgga tgctatgagt gaatccgata gtaacttgta 4560 taaagaggtg attgttgaat atctgaaaaa caattgtact ggaggtgcgg aaccggataa 4620 agttttagtg gttgcatttt ttgttgcact atgtcagtat gctctcaact ctggcacttc 4680 ggttaaagca ataagtgaca ggactgtgga tttgagtttt gggtatgaca atcaaaaata 4740 tacagttaaa gcgggacatt ttttatcata tgctcaatct agaacgtcag gtcacccaaa 4800 cgctctaagg aggttcatgc gatctagtct ggaaacagtt aaacaactac aagatgttgg 4860 gctgatatat tctaatggag tcgtggccgc gaaacatggg gttgtgaaag aattcagaaa 4920 cagctatgca gactttgaca ctggtcatct agacagaatg tctaacgacg atctggctgc 4980 gttgatgtta gctaaatgtc atgcattgaa gaaatccgaa ggtaatagta gaactatata 5040 caatacggtg caattggctg atatgaaaca cccatgctaa acgcaatatg atggaagaag 5100 aaatatcctt agagaatagg gcagttaagg acggactcag tttcaacgtc aatattggtg 5160 ataagttcga cagagaagtc aacttgtcta tcaatttgga ccgtgtgaaa catttcggtt 5220 attcctatgt attcgtatgt ataggcgaca gttctaatag atatcaattg ggatgggaaa 5280 acatcacgaa atccagtttg tcatttaacc atctaaaaaa tggtaaatat gagaacgact 5340 tcagtttaat gaggtctttc acagtggatt ttgacaacaa tatggtagtc aacattagac 5400 tcgtcaacaa caaattggct gtgagtcaag gaggtagaat gactaatgtg ttgtgcgatt 5460 tacccagttc actgaaagta gaactttgga tatccttctc gttagacata ggtaataagt 5520 atgtcaaagg gaaatcggct atcaaatcag tggattgctc aaacttgata tcgaagagat 5580 tggttgatgg ggtggtacct caactgactt ctacacattc gtttttaaaa atcggtagtg 5640 acacgagtag catcaaacct gtaaaaaatg atgtgttaat agaaaaaata aaaacctttg 5700 aagatatcct ggtcgcagct gttgaagatc ataaagacat agaggaagat agatcaaaat 5760 atgaactacc tgacgtaacg tctgaatttc aacaggaaga taagataaaa caagtgaggt 5820 tgtatgacgt gttggattgt ggtggcaaat ctttctccac tttaaccatt aacgcaaaat 5880 ttaagccttt caaatttgta gatatggtta acttattgca gttgtggtat ggagactcaa 5940 aatctaacaa tttagagctg ttgatacgtt atgatgaatc acaacgagat agattgacac 6000 ttcaactcat gtatactaaa aacggcagat ggaggatgtt tgaagaaaag aaggtgacac 6060 tggatgaaca gcagcttaac aaagacgatg gttcaatcag tttcggactg aggaaaacca 6120 aaaacaccta tgtcgtagta cacaacagaa aaactttata cagtttcgat catgcaatta 6180 ggaataattc actaaaagta ggatttgaat ttcagatacc cgtgattata tttcaaaaat 6240 acagttcgga aactttaaat agaccggtgg gatacggaaa aattgttgaa atacttatag 6300 atgggattcc tatcaagtac aacagcaatt tgatgttaga agacaactcc aacataaata 6360 taatgaatat gaaaacatta gacacaataa gttcggacga tgcaaaaaat gtgcgagaga 6420 tgttctccag aaaaagagat ccagatcaag aaaacaataa tgttgaaatt gtagacatcg 6480 ataagccaaa tgaaaagaac cgtccgagtt tgatatgtca aaattttata ggagaaatct 6540 cagacaacta cttaaggtct ctaagaaaca aatgtgaaaa gaaacttgaa ggtctcggtg 6600 tacctaagaa cttaactttc caagtacttt gtcaactatc catgacattc tcaacatctc 6660 gagaatgcgc gtcaaagcaa gatcaattct taaaagtgat taccagtgac aataaatcct 6720 ctatcgtcgt gaacaaaaaa gatgtttacc aatcaataga aaaagatata atgactcacc 6780 ggaagtacaa tcttgagaga atgatgttga gagagagttc caaggaagtg cttgatttac 6840 taagagaagg taagttgaca gtgaacagta gaacagcttt gaagttagga tttttatctg 6900 agaaatctta cctatgttgt gatttcctgg attacaatag agttcttttg acagaagtag 6960 aaaagtctgc tgtgtccctc agcttaaata aactgtccaa tttaaataag agtaaaagga 7020 cattggttaa tgtttcacaa ataacataat ggatagcccg cccagattcg taagtgtgga 7080 taagaacgaa gaaaatgatg taatactgaa tttcaattcc aatttttgga gagtatactc 7140 tgctctaagt aatgatgcca taatgacatg ggacgaattg tatatgttca aacaattatg 7200 tctatcttta ttaactgaat gtgaaagctt accaaacaat ttgattttat atcacaccaa 7260 tacaatgcct cacgaaatat taggttctcg taggattaac gataccgata tagatttaca 7320 ctctagtagg tatttccaga acgtaaccaa acaagtcgtt cggtttctac tagaagacta 7380 cttgatcata atcaacatga aattgcatat gaagaaaggg ttgctggatg tgttagacgt 7440 agacgacata ctcagaatga taaaatctac aaatttggag gtcttgaagt ctatagtgtt 7500 gagttacatc tgcagcagtt tcggtgaatg caaactgtat tgcagacatc tgtcgataat 7560 ctttgaagaa gatcacagat taaagtcttt gttgaaacta ttcaagaaga acaagagttt 7620 aacttcaaag gaaattggag ttataagggc aacaattaat aatggtataa taggaaaatt 7680 taccataaaa agatcgtttg gatttggaat tcctttcgaa aatattaatt tataataggg 7740 gttgtttgca aaactatatc cctagagtca accagcggct taagctgagt ctggttttaa 7800 atctcaaaaa tagtatatat aagaaataca gcacaagtat gtgtatttct tagtgtctcc 7860 taaaacagtt gtttaactgt gcctaaagga gatatactat taattagtat aggt 7914 //