ID   FJ532244; SV 1; linear; viral cRNA; STD; VRL; 1926 BP.
XX
AC   FJ532244;
XX
DT   22-SEP-2010 (Rel. 106, Created)
DT   22-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Rio Mamore virus strain HTN-007 nucleocapsid protein gene, complete cds.
XX
KW   .
XX
OS   Rio Mamore hantavirus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes;
OC   Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus;
OC   unclassified Orthohantavirus.
XX
RN   [1]
RP   1-1926
RX   DOI; 10.1089/vbz.2009.0115.
RX   PUBMED; 20687859.
RA   Richter M.H., Hanson J.D., Cajimat M.N., Milazzo M.L., Fulhorst C.F.;
RT   "Geographical range of Rio Mamore virus (family Bunyaviridae, genus
RT   Hantavirus) in association with the small-eared pygmy rice rat
RT   (Oligoryzomys microtis)";
RL   Vector Borne Zoonotic Dis. 10(6):613-620(2010).
XX
RN   [2]
RP   1-1926
RA   Richter M.H., Fulhorst C.F.;
RT   ;
RL   Submitted (08-DEC-2008) to the INSDC.
RL   Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL   Galveston, TX 77555-0609, USA
XX
DR   MD5; 769dbf5182cf5a683f69ba4f62dd073d.
DR   EuropePMC; PMC2979329; 20687859.
DR   EuropePMC; PMC3309664; 22469569.
DR   EuropePMC; PMC3503106; 23055565.
DR   EuropePMC; PMC3901500; 24447689.
DR   EuropePMC; PMC5649414; 28714801.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1926
FT                   /organism="Rio Mamore hantavirus"
FT                   /segment="S"
FT                   /host="Oligoryzomys microtis (small-eared pygmy rice rat)"
FT                   /strain="HTN-007"
FT                   /mol_type="viral cRNA"
FT                   /country="Peru"
FT                   /isolation_source="lung cell lysate"
FT                   /collection_date="Apr-1996"
FT                   /db_xref="taxon:46920"
FT   5'UTR           1..42
FT   CDS             43..1329
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:E1U660"
FT                   /db_xref="InterPro:IPR002214"
FT                   /db_xref="UniProtKB/TrEMBL:E1U660"
FT                   /protein_id="ACU25552.1"
FT                   /translation="MSNLQEVQEGITIHEQQLVAARQKLKDAEKAVEVDPDDVNKSTLQ
FT                   NRRAAVSTLENKLAELKRQLADLVAAQKLASKPVDPTGLEPDDHLKEKSTLRYGNVLDV
FT                   NSIDLEEPSGQTADWKAIGAYILGFVIPIVLKALYMLSTRGRQTVKENKGTRIRFKDDS
FT                   SFEEINGIRKPKHLYVSMPTAQSTMKADEITPGRFRTIACGLFPAQIKARNIISPVMGV
FT                   IGFGFFVKDWMDRIENFLAAECPFLPKPKVQSESFMGTNRAYFINRQKQVDESKIPDIV
FT                   DLIQAAESESATLFNDIAVPHSVWVFSCAPDRCPPTALYVAGIPELGAFFSILQDMRNT
FT                   IMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGIQLDQKIIILYMLFWGKEAVNHFHLGD
FT                   DMDPELRQLAQSLIDAKVKEISNQEPLKL"
FT   3'UTR           1330..1926
XX
SQ   Sequence 1926 BP; 603 A; 348 C; 422 G; 553 T; 0 other;
     tagtagtaga ctccttgaga agctactact gcatatgctg gaatgagcaa cctccaagaa        60
     gtgcaagaag gtatcacaat ccatgagcag cagcttgtag ctgctcgcca aaaacttaag       120
     gatgccgaaa aggcagtgga ggtggaccca gatgacgtta acaagagcac attacaaaac       180
     agacgggcag ctgtgtctac attggagaac aaactcgcag agctcaagag acagctggca       240
     gatctggttg cagctcaaaa gctggcttca aaaccagttg atccaacagg gcttgagcct       300
     gatgaccatt tgaaggaaaa gtcaactctc cgatatggaa atgttttgga tgtaaactcg       360
     attgatcttg aagaacccag tggacaaaca gcagattgga aggcaattgg agcatacatt       420
     ttaggatttg taataccaat cgtccttaag gccttatata tgctttcaac aagagggaga       480
     caaactgtca aggaaaataa aggaacaaga atacggttca aggatgattc ttctttcgag       540
     gaaataaatg ggatcaggaa gccaaaacat ctatatgttt ccatgccaac agcacaatcc       600
     acaatgaagg ctgatgaaat tacaccaggg agattcagga caattgcatg tggtttgttt       660
     cctgctcaga ttaaagctcg aaatatcata agtcctgtga tgggagtcat tgggtttgga       720
     ttctttgtga aggattggat ggatcggatt gagaatttcc ttgctgctga atgcccattc       780
     cttccgaaac caaaagttca gtcagagtcc ttcatgggaa caaatagggc ttacttcatc       840
     aatcgacaaa agcaggtgga tgagtcaaag atccctgata tagttgatct cattcaagca       900
     gcagagtcag agtcagctac actgttcaat gacattgctg ttccacactc tgtgtgggtt       960
     ttttcctgtg ctccagatag atgtcctcct actgcacttt atgttgcagg gattcctgaa      1020
     ctcggagctt tcttctcaat tcttcaagac atgcgaaaca caatcatggc atcaaaatct      1080
     gttggaacag ctgaagagaa attgaagaag aaatcagcat tctaccaatc ataccttcgg      1140
     aggactcagt ctatgggaat ccaactggat caaaaaatta tcatactgta tatgctattt      1200
     tggggtaaag aggctgtaaa tcattttcat ctgggagatg acatggatcc tgagctcagg      1260
     cagctagcac aatccctgat agatgcgaag gtgaaggaga tttcaaacca ggagcctttg      1320
     aagttgtgaa aagatggtag actcaaggtg gctttccggg gcttgtgcca acagttattc      1380
     atctcaggac tattctgcac taatcaatgt gatagtttta agtagttaga atgtgaaggg      1440
     tggtgggggg taatattata agggtgggat tgtttactta cacgggtaaa gggccatatt      1500
     aaagaattgc actataaatc atgatagcca taagaagtaa attgcactac atagtaatat      1560
     atagttttaa gttaagtttg ctttgtgatt tgatcaatga tgctatgctg actgatcaat      1620
     gactaatgaa tgtaattgag tagataagtt tcgtttgatc ttagatttaa atagtgataa      1680
     gtttagatat aggttaagaa taggtttgat aggttaagtg taatcatata tttagacctc      1740
     atagattaac tttactaatc aattaatgtc attggatgta aattttgttc cttgcttgag      1800
     ctatgcaaca ctaacattga ttaagcacat ttctacctca tcccattacc ctccccttta      1860
     ttctacctca tttattctac ctcattagtt atttctcttg aatgcttttc aaggagcata      1920
     ctacta                                                                 1926
//