ID FJ531813; SV 1; linear; genomic RNA; STD; VRL; 3333 BP. XX AC FJ531813; XX DT 03-JUN-2009 (Rel. 101, Created) DT 03-JUN-2009 (Rel. 101, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate MF3H polyprotein gene, complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3333 RA Jawhar J., Minafra A., Boscia D., Martelli G.P.; RT "Molecular differentiation of grapevine fanleaf virus isolates causing RT yellow mosaic and infectious malformation"; RL Unpublished. XX RN [2] RP 1-3333 RA Jawhar J., Minafra A., Boscia D., Martelli G.P.; RT ; RL Submitted (06-DEC-2008) to the INSDC. RL DPPMA, University of Bari, Amendola, Bari, Bari 70126, Italy XX DR MD5; 10703a71eed2b4e199c228e00b48d962. XX FH Key Location/Qualifiers FH FT source 1..3333 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Nicotiana occidentalis" FT /isolate="MF3H" FT /mol_type="genomic RNA" FT /country="Italy:Puglia" FT /collection_date="2008" FT /note="causes infectious malformation" FT /db_xref="taxon:12274" FT CDS 1..3333 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:C5HUT3" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C5HUT3" FT /protein_id="ACR48169.1" FT /translation="MGKFYYSSRRLACWAAGKNPHLGGSVEQWLAAIETDPSFRQTVKE FT DVQLNRRLLASLRMSLQKREFGAPDERENCSWPFVLRDERRAQLSAPSKSHELPEPPKL FT KKFSIKSPPLPPAPYFRAVGAFAPTRSGFIRSTVERLTREREESRGGALFEELPLEYSQ FT GAPLKLTLAMKFAMLKHTTRRKWYDTSDERLSEAHPGGPCLPPPPPIQSPPSFSERVRE FT FCRMKSCSRAFALETSLGLNKAWVGLVDIPSTSVCCADGRTTGGQTIAQEADPLQHRVS FT TSVAPGRAQWISERRQALRRRERPNSMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEEYRDRGMS FT AVVRDIEPLLKNPFGKSGNPTGLTVVAKYGHERNMTPAFIGFASTFLGNGLARPFFFPG FT LQYSREEPRRESIIWLFVASPKATLDTDSVLGAISVGTLPQHVCSMHYRTVASTVPQAQ FT VQGSTLRATIMGNTVVVSPEGSLVTGTPEPRVEIGGGSSIRMVGPHAWESVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI FT SNFKGVQYEKWITAGLVMPTFKIVILLPANAFTGLTCVLRFDAYNRITXXXXXXXXXXX FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLPIFLDLTAVTSSKSAGLTLDQ FT VPGVGTTKVYNLKSTLVSCFLGMGSTIRGRVHIFAPIFYRIVLWVVSEWKGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLVGQSQRDMSFLNFFAIAGPIAPSGETARL FT PIVVQIDEIVRPDLSLPSFEDDYFVWVDFFEFTLDKEEIEIGSRFFDFTSSTCRVSMGE FT NPFAAMIACHGLHSGVLDLKLQWSLSTEFGKSSGSVTITKLVGDKAMGLDGPFQVFAIQ FT KLEGATELLIGNFAGANPNTHFSLYSRWMAIKLDQAKGITVLRVLCKPRPGFSFYGLTS FT FPV" FT mat_peptide 1..774 FT /product="home protein" FT /note="2A" FT mat_peptide 775..1818 FT /product="movement protein" FT /note="2B" FT gap 928..1167 FT /estimated_length=240 FT mat_peptide 1819..3330 FT /product="coat protein" FT /note="2C" FT gap 2050..2367 FT /estimated_length=318 XX SQ Sequence 3333 BP; 663 A; 623 C; 730 G; 759 T; 558 other; atgggcaagt tttattactc cagcaggcgt cttgcctgct gggctgctgg taagaacccc 60 catcttgggg gttctgttga acaatggctg gcggccattg aaactgatcc ctccttccgc 120 caaactgtta aggaggatgt ccagttgaac cggcggctcc ttgcttctct ccgaatgtct 180 ctccagaagc gggaattcgg ggcccccgac gagcgggaaa attgtagctg gcctttcgtc 240 cttagggacg agaggcgagc gcagctgtcc gccccgtcaa aatcccatga gcttccagag 300 ccccctaaac taaagaagtt ttctattaag tcgccacccc tccccccagc tccttatttt 360 agggctgtgg gggcttttgc accaacccgg tccgggttta ttaggtccac tgtggaaaga 420 ctcacccggg aacgggaaga gtcgagaggt ggggcactat ttgaagaatt gccattggag 480 tactcacaag gtgctccttt gaagttgact ctggcaatga aatttgccat gctcaaacat 540 accactagga ggaagtggta tgacaccagt gatgaacgcc tttctgaggc tcatcctggc 600 ggtccttgtc ttcctccccc tcccccaatc caaagtcctc cctctttttc tgagagggta 660 agggaatttt gcaggatgaa atcctgctcc agggcttttg ccttggaaac ctccctaggc 720 ctcaacaagg cttgggtagg tttggtggac atccccagca cttcagtgtg ctgtgcggat 780 gggcgtacta ccggtgggca aacaattgcc caagaagctg atcctttaca acatagggtc 840 agcacatcag tagcccccgg tagggctcaa tggatctcgg agcgcagaca agctctgagg 900 aggagagagc gaccaaatag catgcagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 960 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1020 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1140 nnnnnnnnnn nnnnnnnnnn nnnnnnnatg gaagagtacc gggacagagg catgtcggct 1200 gtggttagag acatagagcc actactcaaa aacccttttg gcaagtctgg aaatccaacg 1260 ggcttgaccg tcgtggccaa gtatgggcat gagcgtaata tgaccccggc ctttattggt 1320 tttgcttcca catttttagg gaatgggtta gctagaccct ttttttttcc tggtttgcaa 1380 tatagccggg aggaacccag gcgcgaatct ataatttggc tatttgttgc ctcccctaaa 1440 gccaccctag acactgattc agtcctgggg gccattagtg ttggtactct gccccaacac 1500 gtttgctcca tgcactatag aacagtggct agtactgtgc cccaggccca ggtgcaaggt 1560 tcaaccctta gggcaactat tatgggtaat actgtcgtgg tttcgcctga aggaagcctt 1620 gttactggaa cccctgaacc aagagttgaa atagggggtg gttctagtat tagaatggtg 1680 ggaccccatg catgggagag tgtggaggaa ccagggcaaa ccttctctat tagaagccgc 1740 tcccgatctg tgaggattga cagaaatgtt gatcttcctc aacttgaggc cgagcccagg 1800 ttgagctcga ctgtgagagg attagctggt agaggagtga tctacatccc caaggattgc 1860 caggcaaaca gatacttggg caccctgaac atacgtgata tgatttcaaa cttcaagggt 1920 gttcagtatg aaaagtggat aactgcagga ctggtcatgc ctactttcaa gatagttatt 1980 ttgctacccg caaatgcctt tactgggctg acatgtgtgt tgaggtttga tgcttataac 2040 cggataactn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2100 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2160 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2220 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2280 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2340 nnnnnnnnnn nnnnnnnnnn nnnnnnntgc ctccccatat tcttggatct aacagctgtc 2400 acgtcttcta agagtgctgg gctgacattg gaccaggttc cgggtgttgg caccaccaag 2460 gtttacaatc taaaaagcac tcttgtgagt tgttttttag gaatggggag tactattaga 2520 gggagggtgc acatttttgc gccaatcttc tataggattg ttttatgggt cgttagtgag 2580 tggaaaggga ccactatgga ttggaatgaa ctttttaagt atcccggggt gtatgtggaa 2640 gaggatggaa gttttgaagt caaaattcgc tctccatatc accgaacgcc tgctagattg 2700 cttgttggtc aaagccagag agacatgagc tttttaaatt tttttgcaat agcagggccc 2760 atcgctccgt cgggtgagac cgcacgactt cccattgttg tacaaattga tgagatcgtg 2820 cgcccagacc tttctctacc gagttttgaa gatgattatt tcgtgtgggt ggactttttt 2880 gagttcaccc ttgacaaaga agaaattgag attggttctc gtttctttga ttttacttca 2940 agtacttgta gagtttctat gggagaaaac ccgtttgctg caatgattgc ctgtcatggt 3000 ttgcatagtg gtgtattaga cctcaaactt cagtggagtt taagtactga atttggcaag 3060 agcagtggga gcgttaccat tacgaagttg gttggcgata aggccatggg tctggacgga 3120 ccttttcaag tttttgccat acaaaagctg gagggagcta cagaattgtt gattgggaat 3180 tttgcaggag caaacccaaa tactcatttc tctctttaca gtcgatggat ggcaattaaa 3240 ttggatcaag caaagggtat tacagtactc cgtgtcctgt gtaaacctcg tccaggtttt 3300 agtttttatg ggttgaccag cttcccagtc tag 3333 //