ID FJ516746; SV 1; linear; genomic RNA; STD; VRL; 3987 BP. XX AC FJ516746; XX DT 14-OCT-2009 (Rel. 102, Created) DT 31-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Turnip ringspot virus isolate M12 segment RNA2, complete sequence. XX KW . XX OS Turnip ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus; OC unclassified Comovirus. XX RN [1] RP 1-3987 RX DOI; 10.1007/s00705-009-0511-9. RX PUBMED; 19774335. RA Koloniuk I., Petrzik K.; RT "Complete genome sequence of turnip ringspot virus"; RL Arch. Virol. 154(11):1851-1853(2009). XX RN [2] RP 1-3987 RA Koloniuk I., Petrzik K.; RT ; RL Submitted (01-DEC-2008) to the INSDC. RL Department of Plant Virology, Biology Centre Academy of Sciences of the RL Czech Republic, Institute of Plant Molecular Biology, Branisovska 31, Ceske RL Budejovice 370 05, Czech Republic XX DR MD5; 77fa2468bf253493be16bd271ac4ce2c. XX CC GenBank Accession Numbers FJ516745-FJ516746 represent the complete CC genome of Turnip ringspot virus isolate M12. XX FH Key Location/Qualifiers FH FT source 1..3987 FT /organism="Turnip ringspot virus" FT /segment="RNA2" FT /host="Chinese cabbage" FT /isolate="M12" FT /mol_type="genomic RNA" FT /country="Russia" FT /collection_date="1989" FT /db_xref="taxon:392504" FT CDS 410..3697 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:C9WI18" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C9WI18" FT /protein_id="ACX53645.1" FT /translation="MNNIKGRRHCIDNLIPRFAGEPVRDFSNRPQEKYVKFLKVSPFSF FT LCFLIVCHIVTYCEILFRISFAFNSWIGIKLRAWLLSIACDANVEYKRLEAISSWSAGR FT QVTIQHSFSTKKMETVMERGIAAKALELRNDAAMNKGKRFVGLKDHIPAGKDLYVHRQK FT LFEMLKGSKRSREVDISRIKGCEVVEMKHIDVGTLSPGENQIINVKIVKDDMLPQPAQS FT DYAMVTHSNESKYANAMHVGAIEVIFNSYASPTSDIVGGMILVDTCHKSVANAVRSVFV FT TGLAGGKLIRVLMYPNTLVEIGPKMNDRFKLVCTTSNSDISEGFNLASVKVNVVGCTQS FT LMTQYVPQPLLDNLLNKEQGTVVEYLGQLSYVMHHSNHITEEFLANQTMEFDLGKKLQL FT TPSGSGASLASCTSMRYVEGPRQRLLNAEDDDGASSFDKRREAARKSVGMRADTTYVDP FT VFGTTQRAFGQASTTQSLLNKFANTRQMEGTPIETKFARTKIILTKVMAGGNILYTERL FT SDVLSNVEQRAAIAFQRTHVQHKKLVALATINVPENTGCALMMCYNSGIRGKAVVDAYT FT ASAEASTIWNPACQQQARLEINVNPCKSAWSYQFLRQSKGVFNVVCISGWTTTPSTDLS FT LTIDWYLSDKDAEPETYCAVGINPKIVLNRWMGKLSFPQGTDVTLRRMPLAIGGGAGGT FT GLVYMNMPNALCSLWRYMRGGMSFEVIKLSSPYIKATIAFFIAFTDVDATVPNLEAYPH FT KLVQFSEIQERVNISFDKEDFVMAWSTQVHNSVPLSEDGCPYLYAVVHDSVGSTIPGDF FT NIGVVLKEMNEVESIGRHPGWKGARPLAVSPQGLRKSPSGVWNELFMVRGPPEAKSTDV FT VQFAIDLVGVGIATKNPGAWSIETNNSPMNNLMRTATWKSGTFHFQVLMEGNPLIKRGD FT WSSYCEVSLTQSTKVSTMSSRNWVMKDPSSWELEFDIKIEGPNDGFENWESHFSNQTSW FT FLVFSVFNPDQSTVFVVNGMIDDDCWFAGNTLMPPFLEPESVSSRHSFLSSVQFDYGTT FT SSRRAPSLPADSEDEEGRRSERVRQLERYRERDDQNRGNLATFVRRS" XX SQ Sequence 3987 BP; 1169 A; 734 C; 915 G; 1169 T; 0 other; tattaaaatt ttactaagat tttaataaac cgcaatcagg actgagtccg cccccttttc 60 ttttgttact agaaaaagca atcaggcctg agcgccgccg gttacatttt gtccagttta 120 aacaggaagt tgaagttaga aatttcttta tattttctgt gtaattggaa ctctcaaaca 180 agtttattag aaggtgggtg ctggtttttc aaccggtcag actgccacca actcggtgtc 240 tgaacaaact tattgagtaa gtgctgtttt tcaacccgtc agactaccaa gtattccagt 300 ctttggagac ttgccgtatt gctgtgcctc aacagagaat atcagatatt acgcaaacac 360 ctttggttgt cacgcgtgga aatgcatcat taaattatat ttcccgcgaa tgaataacat 420 aaagggacgt cgtcattgta ttgataactt aataccacga tttgcaggag aacccgtacg 480 agatttctct aatagaccac aggagaaata cgttaaattt cttaaagttt cccctttttc 540 ttttttgtgt tttcttatag tttgtcacat agtaacatat tgtgaaatat tgtttagaat 600 tagttttgct tttaatagct ggattggtat taaacttcgt gcttggcttc tgtcaatagc 660 ttgcgacgca aacgttgaat ataagcgatt ggaagcaatt agcagttggt cagctggtcg 720 tcaggttact atacagcatt ccttctctac taagaagatg gaaaccgtca tggaaagagg 780 tattgctgca aaagctctag aactgcgaaa tgatgctgcc atgaacaaag gaaaacgctt 840 tgttggcctt aaagatcaca tacctgctgg taaggattta tacgtgcaca gacaaaagct 900 gtttgagatg ctgaaaggca gcaaaaggag tcgtgaagta gacatcagcc gcattaaggg 960 atgtgaggta gttgagatga aacacataga tgttggcaca ttatcccctg gtgagaatca 1020 gattatcaat gtcaaaattg ttaaggatga tatgctacca caacccgccc aaagtgatta 1080 tgccatggtg acacattcca atgaatcaaa atatgccaat gcaatgcatg ttggggccat 1140 agaagtcatt ttcaatagct atgcatcacc tacaagtgat atagttggag gtatgatttt 1200 agtggacact tgccataaga gtgttgccaa tgctgtaagg agtgttttcg tcacagggtt 1260 ggcaggtgga aagttgatca gagtgctgat gtatccgaac acactcgttg aaataggtcc 1320 caagatgaat gatagattta agcttgtatg cacaacttcg aacagtgaca ttagtgaagg 1380 atttaatctt gcttctgtta aggtaaacgt cgttgggtgt actcaaagct tgatgacaca 1440 atatgttcct caaccactat tggataattt actcaacaag gagcaaggaa ctgttgtaga 1500 gtatctagga caactgtcat atgtcatgca ccattcaaat cacatcacgg aggaatttct 1560 agcaaatcag actatggaat tcgatcttgg aaagaagcta cagctcactc ctagtggatc 1620 tggagcaagt cttgctagct gcacgtcgat gcgctatgtg gaagggccca gacagagatt 1680 actcaatgct gaagatgatg atggagcctc aagttttgat aaacgcagag aagcagcgcg 1740 caaaagtgtt ggaatgcggg ctgatacgac gtatgtagat ccggttttcg ggacaacaca 1800 acgagctttt ggtcaagcga gcaccactca atcattgtta aacaaattcg ccaatacacg 1860 gcagatggaa ggaacaccaa ttgagactaa gtttgctaga actaagataa tcttgactaa 1920 ggttatggct ggtggtaata tcttgtacac tgagcgccta agtgatgttc tttccaacgt 1980 tgaacaacga gctgctattg cttttcagcg gacgcatgtc caacataaga aactcgtagc 2040 gctggccact atcaatgtgc ctgaaaacac tgggtgcgct ctgatgatgt gctacaatag 2100 cggtattcga ggtaaagcag ttgttgacgc ttatacagcc tcagctgaag ctagtaccat 2160 atggaatccg gcgtgtcaac aacaagcgcg tttagagata aatgtgaatc cgtgtaagag 2220 tgcctggagt tatcaatttc tacgacagtc taaaggagtg ttcaacgtag tttgcatatc 2280 aggctggacc acaacaccat cgacagacct ttcactcaca atagattggt atcttagtga 2340 taaggatgca gaaccagaaa catattgtgc tgttggaatc aatcccaaga ttgttctcaa 2400 tcgctggatg ggaaagcttt cctttccgca aggtacagat gttacgctac gtagaatgcc 2460 acttgctata ggtgggggtg ccggaggaac aggactggta tacatgaata tgcccaatgc 2520 tttgtgctct ctgtggagat atatgcgcgg tggaatgtcc tttgaagtca ttaaattgag 2580 ttctccctac attaaggcca ccatagcgtt ttttattgcg ttcacagacg ttgatgccac 2640 agtcccaaat ctagaagcct atccccacaa gttggtccag ttttcggaaa tacaagagag 2700 ggttaacata tcctttgata aggaagattt cgtgatggcc tggtccacac aagtgcacaa 2760 tagcgttcct ctgtccgaag atggttgtcc ttatttgtat gccgtggttc atgacagtgt 2820 tggctcgaca atacctggag atttcaatat tggagtagtg ctcaaagaaa tgaatgaggt 2880 tgaatccata ggaagacatc ctggctggaa aggagcgcga ccactggctg tgagtccaca 2940 gggtctacgg aagagtccct ctggtgtttg gaatgaattg tttatggtta gaggacctcc 3000 agaagctaaa tcaactgatg ttgttcagtt tgcgatagat cttgttgggg ttggaatagc 3060 gacaaagaat ccaggagcat ggtctataga aacaaataac agcccaatga acaaccttat 3120 gcggacggca acctggaaga gcgggacttt tcattttcaa gtgctaatgg aagggaatcc 3180 acttattaag agaggagatt ggtcttcata ttgtgaggtt tccctaacac aaagtactaa 3240 ggtctctacc atgtcaagca gaaactgggt tatgaaagat ccttcatcgt gggaactaga 3300 atttgacatt aaaattgaag gtcctaatga cggatttgaa aactgggaat cacatttcag 3360 caatcaaaca agttggtttc tcgtcttctc tgttttcaac ccagaccaat caactgtctt 3420 tgtggtgaat ggaatgatag atgatgattg ttggtttgct ggcaatactc tgatgccacc 3480 gtttcttgaa ccggaaagtg tcagtagtag gcattcattt ctgtcatcag ttcaatttga 3540 ctatgggact acatcaagta gaagggcacc ttctctacca gcagacagcg aagatgaaga 3600 ggggagaagg tcagagaggg ttcgacagtt agaaaggtac agagaaagag atgatcaaaa 3660 tcgaggaaat cttgcaacat tcgtgcgacg ctcttaattt caccgtagtt atagactaag 3720 tttaaatatg ttacgttttg tgtttttgtt tttctctttt tgagtttttc tgtgtttgtc 3780 tatgattaaa tatctgtata attagtagat gtaaatctgc tttgtgcgtt tgacagtctg 3840 tggaaatgca ctggttcatg agataggacc acctaggagg taggactctg ggttttaatt 3900 atctcattta ttagttatac catattatat atatgattta gtaaataaat tgttttcctt 3960 ttgatatata ttgttacttt tttatta 3987 //