ID FJ516745; SV 1; linear; genomic RNA; STD; VRL; 6078 BP. XX AC FJ516745; XX DT 14-OCT-2009 (Rel. 102, Created) DT 31-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Turnip ringspot virus isolate M12 segment RNA1, complete sequence. XX KW . XX OS Turnip ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus; OC unclassified Comovirus. XX RN [1] RP 1-6078 RX DOI; 10.1007/s00705-009-0511-9. RX PUBMED; 19774335. RA Koloniuk I., Petrzik K.; RT "Complete genome sequence of turnip ringspot virus"; RL Arch. Virol. 154(11):1851-1853(2009). XX RN [2] RP 1-6078 RA Koloniuk I., Petrzik K.; RT ; RL Submitted (01-DEC-2008) to the INSDC. RL Department of Plant Virology, Biology Centre Academy of Sciences of the RL Czech Republic, Institute of Plant Molecular Biology, Branisovska 31, Ceske RL Budejovice 370 05, Czech Republic XX DR MD5; 494d72d63bca5556da1c9804b5d26fa8. XX CC GenBank Accession Numbers FJ516745-FJ516746 represent the complete CC genome of Turnip ringspot virus isolate M12. XX FH Key Location/Qualifiers FH FT source 1..6078 FT /organism="Turnip ringspot virus" FT /segment="RNA1" FT /host="Chinese cabbage" FT /isolate="M12" FT /mol_type="genomic RNA" FT /country="Russia" FT /collection_date="1989" FT /db_xref="taxon:392504" FT CDS 319..5892 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:C9WI17" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:C9WI17" FT /protein_id="ACX53644.1" FT /translation="MACLTLHKEQSSYALIPHFMSSDVRWLLRCYTYVNTFLPEFPVTN FT RLARLRDRHFDLLCLGYGAYLTHRNAMASEPLEICQADFIFEDFHQFLCEKVSGNGGIS FT HFRTYINVCFGTYFGELIEFSALVLDESEDQDFDLQGLRDCISSVASYIPLQVSVAVEW FT TTDRIIDGIRARFEEVVAEWCPMAMQACSWISNIWDKVTLWVQESIEAMRWFLKGAREL FT FYYGVSILTASCVIGIVEKILVATNLLAPNRGLVEAFLSSAALTGAFMSFKKKEDPTPM FT ITMISVLAGVVSAAVTAMFGAPNVAVLQGPVELLENAATALGIFCETTLLSMGKTCQAV FT NQISTCAGNLKAMAGKLFGILQDFIWKVFGMESRFLRDASLMFGEDVDQWLKDIAECQD FT SYLAKAYSSQDDIIKMQALIKKGHDMRSKVLKVTSRISPVLANTVTRGVESVEKLLRES FT LCQGIKATRKIPFVVYAYGESRTGKTLVVDKLITDFQNHFGLGKGTVYSRNPIDQYWSG FT YRRQPIVSIDDFGAVACEPSMEAQMIPLVSSSPMPLTMAAVEEKGLMFDSKFIFCSSNL FT LEASPESKVHDNQAFRNRRHVLIHVTLDEEKEYNMHDFTANQRYKILKYDKGTYVVQNE FT FTSYGDLLSFCLTKWEEHEAEQVANLAKKLDEPALMGDFRSFEVMFSGMILKSVEGKIM FT EHSDEKTGKSFYDFVCFRRKDKLWHFTVDSSGKANMWSEKVTSEELSAKELESQEILRR FT CYEMLRFNEDTNLIIRMHLKDLAREDFYDEKMRFIGKFGNEHIQAQMQPTLDNMLDWHK FT IVLCGMGALQDRRSPVKWYEGLVDKIKDAMYTVYSKEISEWPLGLKIVVGVLISSLMGS FT GLWSLMNVLQGAGNTAALGVAAATGFSRYSKEDIAVAQSRKPNRYDVAQYKYRNVPITK FT RAWAQGVMPLEHATAMIFNKIKASMQYGRTEVQIAIVPGRRFIGYTHFFQKITTPIRVM FT INTASGSRHLYYKPENMKYFEDSELCVYEDITLEDLPGTSWDLFCWDFEKVQQTSFKAL FT FLSCKRKAATGLPNPEWADIDVRTKTESLMINEGDYARVLPRFLEYMAPTVNYDCGSLI FT VAEVEGTYKVVGIHVAGSGGTKGYACFLPPLVRKAQAQHAQQYFDYLAFEEREGDGIAR FT IATLKKGIHIPVPTKTSLVETPAEMHLDTPCDKYPSILSNTDPRLEVSGVTDYDPFKAG FT ILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLEEAINGIKGMEYMERIP FT MATSEGFPHILTRSHGEKGKIRFVEGDGEDLTLLPNTSVTEALDIMEEHLEHEVPTLIG FT IECPKDEKLPYRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMKRRDILPCQVGIN FT PYGMEWTDLAARLKSKGNNVLCCDYSSFDGLLSKQVMTAMASMINSFCGGDTSIKRKRE FT NLLMACCSRYAICKSDVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRKQKVPGL FT ISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLF FT RRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYINVTNLEQHEAYKTNLVNVLRE FT LYMWDVNECSALRKKALQRVEWLVPSDLPTVAQIEEWYATCRGRYMPDSADSINFLLDQ FT EHLGPLLAPQGVQRGVRLTDQVRTVNLAHENHTTRKPGELWILCQTLYPHSMLPEGVRA FT INWPLGTGRGGLPTTSWVEENVKRPTSEIRKTISAALKRGEQIVFATRDNILPCNMLAV FT LFLVIEGSIKVETSNMIISAVIQQCKTLGYLVRECDFAFFAT" XX SQ Sequence 6078 BP; 1762 A; 1051 C; 1472 G; 1793 T; 0 other; tattaaaatt ttgataagat ttggatagac cgcaatcagg actgagctcc gcccgttact 60 gaaagttgca aagtgttttt gaatattatt cattcagaaa tttttacttt gtcctctttt 120 atgattttaa actcgcggat acgtttgttg aagataggtg ctggtttttc aaccggtcag 180 actatcattg gttactgttt cctttgtgaa aatattttac ttttgctgtg cctttgattt 240 gcattcaaga atatcagaaa ttagtgcgaa tttctttgct actgtgtgag tactacaagc 300 tttgctttat taaataatat ggcttgttta actttgcaca aggagcagag cagttatgct 360 ttgatacctc attttatgag tagtgatgtt aggtggctat tacgttgtta tacgtatgtc 420 aacacttttc ttcctgaatt tccagttaca aacagattag cacgtttgcg ggataggcat 480 tttgacctac tttgtttagg ttatggtgca tatttaacac atcgcaatgc tatggcaagt 540 gagcctttgg aaatatgcca agcagacttc atatttgaag acttccatca gtttttgtgt 600 gaaaaagttt ctggaaatgg aggaatttcc cattttcgga catacataaa tgtctgcttt 660 ggcacgtatt tcggagaatt gattgaattc agtgcacttg tgctagatga aagcgaagat 720 caggattttg atttgcaagg actacgcgac tgcatcagta gcgtggcctc ttatatccca 780 cttcaagttt cagttgctgt ggaatggacc actgatagaa ttattgatgg aattcgagca 840 cgttttgaag aggtagttgc tgaatggtgt cccatggcaa tgcaggcatg ttcctggata 900 tctaatattt gggacaaggt tactctgtgg gtacaagaat ccattgaagc aatgcgttgg 960 tttttgaaag gagcccgtga attattctac tatggagttt ccattttgac agccagttgc 1020 gtaattggta tagtggaaaa aatattggtt gcgacaaatt tgttggctcc caatcgtgga 1080 ctcgtagaag cttttctatc aagtgctgct ttgactggtg catttatgtc atttaagaag 1140 aaagaggatc ccacaccgat gattactatg atttcagtgc ttgctggagt ggtgtcagct 1200 gccgttactg ccatgtttgg agcgcccaac gttgcagtgc tacaaggccc agttgaattg 1260 ttggaaaatg ctgcaactgc acttgggatt ttctgtgaaa caacactgtt gtccatggga 1320 aaaacctgtc aagcagtgaa ccaaatcagt acatgtgctg gaaacttaaa ggcaatggca 1380 ggcaaacttt ttggaatttt gcaggacttt atttggaaag tatttggcat ggagtctaga 1440 tttctgcgag atgcttcctt gatgtttggg gaagatgttg atcaatggtt gaaagatatt 1500 gcagaatgcc aagattcgta tctggccaag gcttattctt cccaagatga tattataaag 1560 atgcaagctc ttatcaagaa aggacacgat atgcgttcca aagtgttaaa ggtcactagt 1620 cgcatttctc ctgttctggc aaacacggtt acgcgaggtg tcgagtctgt ggaaaagttg 1680 ctgagagaat ctttatgtca aggaataaag gcaacacgaa aaattccatt tgttgtgtat 1740 gcttatggag aatctagaac tggcaaaacg ttggtcgttg ataagttaat cacagatttt 1800 caaaaccatt ttggtctagg gaagggcact gtttacagta gaaatcctat agaccaatat 1860 tggagtggat accgtagaca accaattgtg agtattgatg attttggtgc cgtagcttgc 1920 gagccctcta tggaagccca gatgatacca cttgtgtcta gttcacccat gcctcttaca 1980 atggcagcag tcgaagaaaa aggattaatg tttgattcaa aattcatttt ctgttcatca 2040 aacttgttgg aagcaagccc agaaagtaaa gttcatgata atcaagcttt cagaaacaga 2100 agacacgttt tgatacatgt cactttggat gaagagaaag agtataacat gcatgatttt 2160 actgcaaatc agaggtacaa aattctcaag tatgacaaag gaacatatgt tgtgcaaaac 2220 gagttcacct cttacggaga tttgttatcc ttttgtctta cgaaatggga agagcacgaa 2280 gcggagcaag tggcgaattt ggccaaaaag ttggatgagc ctgctcttat gggtgatttt 2340 cggagttttg aagtcatgtt ttcgggcatg atcttgaaaa gtgttgaagg taaaatcatg 2400 gagcacagtg atgagaaaac cgggaaaagt ttttatgatt ttgtgtgctt cagacgcaaa 2460 gacaagttgt ggcatttcac agtggactca agtggtaaag ctaacatgtg gtcagagaag 2520 gtcactagtg aggaattgtc cgcaaaagaa cttgagtcac aggaaatttt gcgtcgttgt 2580 tacgagatgc tgcgctttaa tgaagacacc aacttgataa ttaggatgca tctgaaggat 2640 cttgcacgag aagattttta tgatgaaaag atgcgtttta taggcaagtt tggaaatgag 2700 cacattcagg cacagatgca gcccacgcta gacaacatgt tggattggca caaaattgtg 2760 ctgtgtggca tgggagcctt acaagatagg agatctcccg tgaaatggta cgaaggcctt 2820 gtggataaga ttaaggacgc catgtacacc gtctacagca aagaaatttc tgaatggcct 2880 ttgggtctca agatcgtcgt gggagtgttg atttcttcgc ttatgggttc tggactttgg 2940 agtttgatga atgtgttgca aggagcaggg aatactgcag ccctcggcgt tgccgcggcc 3000 acaggattca gccgatacag caaagaagat attgcagtag ctcagagtcg caagccaaac 3060 aggtatgacg ttgctcaata caaatacaga aatgttccaa ttaccaaacg tgcttgggca 3120 cagggagtta tgcctcttga gcatgccacc gcaatgatat ttaacaagat caaggcgagt 3180 atgcaatatg ggcgcacgga agtacaaatc gcaatagtgc cagggaggcg attcatcggt 3240 tacactcatt tctttcagaa gatcaccacg ccaatacgtg ttatgataaa cacggcatcg 3300 ggctccagac atctctatta caaaccagag aacatgaagt acttcgagga tagtgaattg 3360 tgcgtttacg aagatatcac gctggaggat ttgccaggca caagctggga tcttttttgc 3420 tgggattttg agaaggtaca gcagacctct ttcaaggcac tctttttgtc atgtaagaga 3480 aaggcagcta caggcttacc caatcctgaa tgggcagaca ttgatgttag aaccaagaca 3540 gaatctttga tgataaatga aggtgattat gcacgtgtgc tgcccagatt tttggaatat 3600 atggctccta ctgttaacta cgattgtgga tcactgatag ttgctgaagt tgagggaacc 3660 tataaggtcg ttggcataca tgttgctgga tcaggaggaa caaaaggcta cgcttgtttt 3720 ttaccaccac ttgttagaaa agcacaagct caacatgctc aacagtactt tgattacctt 3780 gcttttgagg aaagagaggg tgatggcata gccaggatcg ccactctgaa gaaaggcatt 3840 catatccctg ttccaaccaa aacgtctctc gtggaaacgc cagctgaaat gcacctggac 3900 acaccttgtg acaaatatcc cagtatttta tctaacacag atcctcgtct tgaggtttct 3960 ggcgtgacag attatgatcc ttttaaagca ggcattttga agtaccagaa cccaatggga 4020 gaactagatc aggatttgct tcaggaagta tgtgatgaaa tagaggaaac atggagagat 4080 tgccaggagg agtttgaaac gttcgaggaa gtgagtttgg aagaagctat caatggaatc 4140 aaaggaatgg aatacatgga acgaatcccg atggcaacgt ctgagggctt tccacatatc 4200 ttaacgagat ctcatggaga gaaagggaaa atccgattcg ttgaaggtga tggtgaagac 4260 ttgactttgt tgccaaacac tagtgtgacg gaagcactgg acatcatgga agagcatttg 4320 gagcatgaag tgccaacttt gattgggata gaatgtccta aagatgagaa gctgccatac 4380 agaaagattt ttgagaagcc taaaacacgt tgtttttcta tacttccgat ggagtacaat 4440 cttttggtac gacgccgttt cctaaagttt gttagattca ttatgaagag aagagacatt 4500 ttgccgtgcc aggttggtat aaatccgtat ggaatggaat ggacagattt ggctgcacgc 4560 ttgaagagca agggtaataa tgtgctttgc tgtgattaca gtagttttga tggtctattg 4620 tctaaacaag ttatgacggc tatggctagc atgataaact ccttttgtgg aggagacaca 4680 agtatcaaaa gaaaacgaga aaatttgttg atggcatgtt gttctcgcta tgccatttgc 4740 aagtctgatg tctggcgtgt tgaatgtggg ataccatctg ggtttccact cactgtgata 4800 tgtaattcca tcttcaatga aattctcata cgctacagtt tcaaagctat tatgcgcaag 4860 cagaaagttc caggccttat ttcaataagc tttgacaagt atgttggaat ggttacatat 4920 ggggatgaca acttgctttc tgtgagtgaa gttgttaaac cctattttga tggaaagagg 4980 ctgaaggagt ttttggcaaa gcataaggtt gtgattacag atgggaaaga caagaccagt 5040 ccttacttac tttttcgcag gctagaagat tgtgactttt tgaagcgagg tttcaggaag 5100 gataagaatg gcatcttttg gaatgctcct gaagagaaag agagtttgtg ggcacagttg 5160 cattatataa atgttaccaa tttagagcaa catgaggcct ataaaacaaa tttggtgaat 5220 gtgctacgtg agctgtatat gtgggatgtt aatgagtgtt ctgctcttag gaagaaagct 5280 ctacaacgtg tggagtggct ggtgccatca gatctcccta cagttgccca aatagaagag 5340 tggtatgcta catgtcgagg aagatatatg ccagattcag cggattctat caacttcctc 5400 ttagaccagg aacacttagg gcctttgttg gcaccacagg gtgtacagag aggagtgcgt 5460 ttaactgacc aagtccgtac tgttaatctt gcacatgaga accacaccac acgaaaacca 5520 ggagagttgt ggatactgtg tcaaacgcta tatccccata gcatgcttcc tgaaggagtt 5580 agagcgatca actggccact tggcacaggt aggggaggat tgcccaccac atcttgggtg 5640 gaagaaaatg tcaagcgtcc gacttcggaa atcaggaaaa ccataagtgc agccctcaaa 5700 agaggagaac agattgtttt tgcaacgcgt gacaacattc tgccatgtaa tatgctagct 5760 gttttgtttt tagtcattga aggtagcata aaggttgaaa caagcaacat gatcatttca 5820 gcggtcattc agcagtgtaa aactttagga tatttagtta gagagtgtga ttttgctttc 5880 tttgcaacat agatttagtt ttacgtctgc tttgtgtgtt tgacagtctg tggaaacaca 5940 ctggttcatg agacaggacc acctaggagg taggactctg ggtttagttg tctcttttgt 6000 tgtttgacta ttctaaaaat aagtaatttt gtaataatta gtttcttagt tgatatgtat 6060 tattactttt tttattta 6078 //