ID   FJ514798; SV 1; circular; genomic DNA; STD; VRL; 2759 BP.
XX
AC   FJ514798;
XX
DT   15-JAN-2009 (Rel. 99, Created)
DT   31-AUG-2025 (Rel. 144, Last updated, Version 6)
XX
DE   Begomovirus solanumkarnatakaense, complete genome.
XX
KW   .
XX
OS   Begomovirus solanumkarnatakaense
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2759
RX   PUBMED; 23637488.
RA   Borah B.K., Cheema G.S., Gill C.K., Dasgupta I.;
RT   "A Geminivirus-Satellite Complex is Associated with Leaf Deformity of
RT   Mentha (Mint) Plants in Punjab";
RL   Indian J Virol 21(2):103-109(2010).
XX
RN   [2]
RP   1-2759
RA   Borah B.K., Cheema G.S., Dasgupta I.;
RT   ;
RL   Submitted (03-DEC-2008) to the INSDC.
RL   Plant Molecular Biology, University of Delhi South Campus, Benito Juarez
RL   Road, New Delhi, Delhi 110021, India
XX
DR   MD5; 89afbec0fde5951726d4d237e02b24bd.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2759
FT                   /organism="Begomovirus solanumkarnatakaense"
FT                   /host="Mentha spicata"
FT                   /mol_type="genomic DNA"
FT                   /geo_loc_name="India: Punjab"
FT                   /collection_date="Jun-2008"
FT                   /note="causes mentha leaf deformity; previous_name: Tomato
FT                   leaf curl virus, updated per ICTV VMR 40.1"
FT                   /db_xref="taxon:3427035"
FT   gene            144..509
FT                   /gene="V2"
FT   CDS             144..509
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="precoat protein"
FT                   /protein_id="ACL50598.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT                   ISVIRARNYVEATSRYNHFHSRFEGSSPSELRQPICEPCCCPHCPRHKGKSMGEQAHEP
FT                   KAQDVPGVQKPRCSEGM"
FT   gene            304..1074
FT                   /gene="V1"
FT   CDS             304..1074
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /protein_id="ACL50599.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA
FT                   NRPMNRKPKMYRVYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT   gene            complement(1071..1475)
FT                   /gene="C3"
FT   CDS             complement(1071..1475)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="REN"
FT                   /note="replication enhancer"
FT                   /protein_id="ACL50600.1"
FT                   /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDI
FT                   ITVQVQFNHNLRKVLGIHKCFLVFRIWMTSQPPTGRFLRVFKTQVIKYLDHLGVISINN
FT                   VVRAVDHVLWNVLHHVVYVEQSYSIKFNLY"
FT   gene            complement(1216..1620)
FT                   /gene="C2"
FT   CDS             complement(1216..1620)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="TrAP"
FT                   /note="transcriptional activator"
FT                   /protein_id="ACL50601.1"
FT                   /translation="MRSSSPSKAHSTQVPIKVKHRLAKKGTRRRRVDLPCGCSYFIALA
FT                   CHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQP
FT                   EESVGDTQMFPSLPNLDDLTASDWSFLEGI"
FT   gene            complement(1523..2608)
FT                   /gene="C1"
FT   CDS             complement(1523..2608)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="Rep"
FT                   /note="replication associated protein"
FT                   /protein_id="ACL50602.1"
FT                   /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIR
FT                   ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM
FT                   EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFH
FT                   NLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLNLSQKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNIKYQKPVQIKGGIPTIFLCNPGPDSSYKEFLDEEKNSKLKNWAVKNAIFVTLEGPL
FT                   YSGSNQSEAQVSQEGDQTSSC"
FT   gene            complement(2158..2451)
FT                   /gene="C4"
FT   CDS             complement(2158..2451)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4"
FT                   /note="may be silencing suppressor"
FT                   /protein_id="ACL50603.1"
FT                   /translation="MGLLTCMFSSSSKENSSARTIDSSTLPPQPGQHISIRTFRELKAQ
FT                   AMSKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY"
XX
SQ   Sequence 2759 BP; 734 A; 542 C; 645 G; 838 T; 0 other;
     accggatggc cgcgaatttt tttgtgggcc cgtcaacgca ctaacggaca aggacatgct        60
     atccaatcac atgacgcgct caaagcttaa ttgttttgtg gtcccctatt taaacttcgg       120
     caccaagtat tgtgttttgc actatgtggg atccattgtt aaacgagttt cctgaaaccg       180
     ttcacggttt tagatgtatg ttagcagtta aatatctgca gttagtagaa aagacctatt       240
     ctcccgacac attaggttac gatttaatta gggatttaat ttcagttatt agggctagaa       300
     attatgtcga agcgaccagc agatataatc atttccactc ccgcttcgaa ggttcgtcgc       360
     cgtctgaact tcgacagccc atatgcgagc cgtgctgctg cccccattgt ccgcgtcaca       420
     aaggcaagag catgggcgaa caggcccatg aaccgaaagc ccaagatgta ccgggtgtac       480
     agaagcccag atgttccgag gggatgtgaa ggcccgtgta aggtccagtc atttgagtcc       540
     agacatgata tccagcacat tggtaaagta atgtgtgtta gtgatgttac tcgtggtatt       600
     gggctgacgc acagggttgg caagaggttc tgtgtgaagt ccgtttatgt tttgggcaag       660
     atctggatgg atgagaacat caagactaag aaccatacga atagtgttat gtttttcctt       720
     gttagagatc gtaggcctgt tgataagcct caagattttg gtgaggtttt taacatgttt       780
     gataatgagc ccagcacggc gaccgtgaag aatgttcatc gtgataggta tcaggtgctg       840
     agaaagtggc atgcaactgt caccggtggt caatatgcat ccaaggagca ggctctcgtg       900
     aagaagttta ttagggttaa taattatgtt gtgtataacc agcaagaggc tggcaagtat       960
     gagaatcata ctgagaatgc gttgatgttg tatatggcgt gtacccacgc ctctaaccct      1020
     gtgtatgcta cattgaagat acggatctac ttctatgatt cagtatcgaa ttaataaaga      1080
     ttaaatttta ttgaatatga ttgttctaca tatacaacat gatgtaatac attccataat      1140
     acatgatcaa ctgctcgaac tacattgtta atactgataa ctcctaaatg atctaaatac      1200
     ttaataactt gggtcttaaa taccctcaag aaacgaccag tcggaggctg tgaggtcatc      1260
     caaattcgga agactaggaa acatttgtgt atccccaaca ctttcctcag gttgtgattg      1320
     aactgtactt ggacggtgat gatgtcttgg ttcatcagga atggccggtt gtgatgctct      1380
     gttatcttga aatatagggg attttgaatc tcccagataa acacgccatt ctctgcttga      1440
     gctgcagtga tgagttcccc tgtgcgtgaa tccatggtcg tggcaggcta atgctatgaa      1500
     gtaagaacag ccgcacggta gatcaacacg acgacgtctg gtccccttct tggctaacct      1560
     gtgcttcact ttgattggaa cctgagtaga gtgggccttc gagggtgacg aagatcgcat      1620
     tctttacagc ccagtttttt agtttagaat tcttttcttc atccaagaat tctttatagc      1680
     tggagtcggg tcctggattg cagaggaaga ttgtgggaat tccgccttta atttgaactg      1740
     gcttctggta ctttatattt gattgccagt ccctttgggc ccccatgaat tccttaaagt      1800
     gctttaggta gtgggggtct acgtcatcta ttacgttata ccaggcatca ttactgtaga      1860
     ccttttggct aaggtttaga tgaccacata gataattatg tggtccaagt gatctggccc      1920
     acatcgtctt cccagttcta ctgtcaccct cgatcactat acttatgggc cttaaaggcc      1980
     gcgcagcggc actgacgacg ttctcggcag cccattcctc aagttcttct ggaacttgat      2040
     caaaggaaga agaagaaaaa ggagaaacat aaacctccat tggaggtgta aaaatcctat      2100
     ctaaattaga atttaaattg tgaaattgta aaacataatc tttgggagcc ttctccctta      2160
     atatattgag ggcctcaatt ttggaccctg cgttgattgc ctcggcatat gcgtcgttgg      2220
     cagattggca acctcctcta gctgatcttc catcgacttg gaaaactcca tgatcaagga      2280
     tgtctccgtc tttctccatg taggttttga catcgcttga gcttttagct ccctgaatgt      2340
     tcggatggaa atgtgctgac ctggttgggg aggtaaggtc gaagaatcta ttgttcttgc      2400
     actggaattt tccttcgaac tggatgagaa catgcaagtg aggagtccca tcttcgtgaa      2460
     gctctctgca gattctaatg aattttttag aagttggtgt ttggagattt aagaattggg      2520
     aaagtgcttc ttctttagtg agggagcact tgggataagt gagaaaataa ttttttgcat      2580
     ttattttaaa ccgatttggg gctgccatgt tgacttagtc aatcggtgtc tctcagtttg      2640
     ttctatgtat cggtgtactg gagtcctata tatatggaga ctctaatggc ataatggtaa      2700
     taaacgaact ttaatttgaa attcaaaata aaaggctaaa cggccatccg tataatatt       2759
//