ID FJ493469; SV 1; circular; genomic DNA; STD; VRL; 8222 BP. XX AC FJ493469; XX DT 13-JAN-2009 (Rel. 99, Created) DT 13-JAN-2009 (Rel. 99, Last updated, Version 1) XX DE Rudbeckia flower distortion virus isolate Minnesota, complete genome. XX KW . XX OS Rudbeckia flower distortion virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus. XX RN [1] RP 1-8222 RA Lockhart B., Olszewski N.; RT "Complete sequence of Rudbeckia flower distortion virus (RuFDV), a RT pararetrovirus in the family Caulimoviridae isolated from Rudbeckia hirta"; RL Unpublished. XX RN [2] RP 1-8222 RA Lockhart B., Olszewski N.; RT ; RL Submitted (26-NOV-2008) to the INSDC. RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. RL Paul, MN 55108-1095, USA XX DR MD5; 36e94041a358eba470faa44232b60537. XX FH Key Location/Qualifiers FH FT source 1..8222 FT /organism="Rudbeckia flower distortion virus" FT /host="Rudbeckia hirta" FT /isolate="Minnesota" FT /mol_type="genomic DNA" FT /country="USA:Minnesota" FT /collection_date="Sep-2008" FT /db_xref="taxon:587370" FT misc_feature 1..12 FT /note="predicted tRNA binding site; priming site for FT reverse transcription" FT CDS 113..451 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:B8Y867" FT /protein_id="ACL36978.1" FT /translation="MTDRTESSSNQNLWYIGDGTSYQCYLQGQYPHSFHCTNYELLPAV FT VNQLQDGLNFLILNSIKKDSQEKPVNNYLEIDNEIKNLFLIQDKKIEDLNSKLDKVLQL FT QTDILKRI" FT CDS 453..1418 FT /codon_start=1 FT /product="putative cell-to-cell movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:B8Y868" FT /protein_id="ACL36979.1" FT /translation="MSIDITCYDDVTQLVSFNEDQKYYSSDVMIDTAKARKLAKHDAIT FT IKSGENIKTAILKSIFGRLSRENIIYLGKFVQEHPIEISQADGLTGLNLVTNHQLSERL FT AKISDHDRSKISYLHIGTIQIILKSTFKEMINSPIDLAIIDNRIKTSDCIIGIIQGNLA FT YQVIKFNVNLNYAIPLESKNITNSIGILYKFHNKELMEKGDHPFSITYAVGYCLTNSHH FT SIDYIKHDKIIVDKLFDEVSTRNMHFSFKNDKTPFRTLKRTPSSRIPTLKLTSNADYAN FT TSIGALPIQPIRRSITLPNEQVQQIAEGVSNLTEIINKRL" FT CDS 1418..1984 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:B8Y869" FT /protein_id="ACL36980.1" FT /translation="MDASFGKRNEDESLTHYLERVLPTVINQVTDMTQILKELFDKTGI FT QTYETEFERYFKSKQFSKFRDNECLDSKMEHTMVIPLNVPTIPDYSGQTIECSCSNKGN FT WPHLLHSGNPVLNTQSDILVYLRKTVSDIQKQQVFDHSNLVQLIQHELKNLKCECNCEK FT ASASINWEISPNFTQDTGKLFITDK" FT CDS 1981..3606 FT /codon_start=1 FT /product="putative capsid protein" FT /note="structural protein" FT /db_xref="GOA:B8Y870" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:B8Y870" FT /protein_id="ACL36981.1" FT /translation="MIFPILVKTFIIISGSHTVHRFIKNISKPEQTEQLYPLIDTNVSN FT EILTQEVIDNIQSFQIKTEQDEPVQEKLYGYEDDEEEILVDNSSYGSIPEDEDPEERAY FT NEEGQGSGIPEFNVIPKNEGAEHYDPFNDFQRNYDSDRRRYPRGHFNFSDLRFPRETNV FT PLEFQPRSYKNSTLSVLNIDCIVNKAQAIDDWIAATDVMILTNEGLRNNIKNAWAFITH FT LVSGNITEYINRLNEEQKKKLFEESKDGHDLLRLFRAALYAAFLGIDIKNNPEEAQLKK FT EENAMWRLNNICISDLCLLDEFHCEFEKYFYQLSVDNQERYLQVYSDKIPGEVGFEHRR FT SWRERDPSILDTLGGRKRSLDEYIARECTRRLLFKQVKRTAKICCKPNNLNIPGNYGCY FT PTVPAKNRNKKLFQKKKLKRFKKTNRNSYYKAKPAFRRKFFRKRKTVVKPTTKTADNKA FT KYCPKGKPNCRCWLCKEEGHYANACPNKEKIDSKQVKLFETIYLLQGFEPIEDDENLSD FT SDSIYYLTDDEIEDYSSDESESEN" FT CDS 3557..5662 FT /codon_start=1 FT /product="putative enzymatic polyprotein" FT /note="contains aspartic protease, endonuclease, and FT reverse transcriptase" FT /db_xref="GOA:B8Y871" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:B8Y871" FT /protein_id="ACL36982.1" FT /translation="MTKSKITLLMNLNLKTSGKSTKTNPYSTYVTVGFYFNGYKGFHLH FT AYVDTGATSCTASPHIIPTELWEELPKPILVNIANDTNIEIRYVTRNLKVSMTDTNGNK FT HTFIIPTVYQQNTGMDFIFGQNFLKLYRPFTQDLYEIYLTPKLLKFKIQQRAFKQASPG FT FLDSIRKQKRGEIISKHATNPINITKLEDNLRIVETILEDSNSKTLSEVSDSKTLSEDS FT DDYFVYSIQRHNTIVNDLLTQACSENPLDENKNHNGLLAEIKLINPATTVNVKSMAYSP FT DDAVEINKQIQELLEIKVIRPSRSPHSSPCFLVQNHNEIKRGKKRLVINYKALNAATIS FT DGYLLPNKETILTAIRGRKYFSTLDCKSGFWQIRLNENSKPLTAFSCPMGQYEWNVVPF FT GLKQAPGLFQRFMDNSFKEYSAFCAVYVDDILVFSKTLDEHYDHLETVLRKCIETGIIL FT SKKKAEVAKTKINYLGFTISNGEIELQSHILENIKLFPSRIPDKKSLQRFLGILTYADQ FT YIRKLAEWRKPLQRKLKKDTVWEWNDSDTQYVEKFKRNLKEFPKLHHPLPDEYLIIETD FT ASHEHWAGVLKSRGTDNLERLCRYTSGSFKPAEINYHSNEKEVLAVKRTITKFKGYLAS FT SEFLVRTDNKYFTYFLRTSIKDDYKQGRLIRWQQWFSHYKFNVEHLAGTHNFTADSLTR FT EFANKPP" FT CDS 5672..6769 FT /codon_start=1 FT /product="putative translational transactivator" FT /db_xref="UniProtKB/TrEMBL:B8Y872" FT /protein_id="ACL36983.1" FT /translation="MASLAEINAAEQALLAKLEGLIKEVKTEFSKLRKNTASSSSEKDQ FT PPKKIQKAEDKTLSLRPNYKRILEQEFDEDERKFTVLGKIPQNHAKLAELPALPLIKLN FT PEELTSKNFLEAFNFLRTASKEDFEEKHIFPTRRTTKEDPRAIIFPMAMPSDVYELFCL FT GLIKTIYLTGKNETISHFPNKFRQAVQGWMKRTSTENAVLTILSTIPDWKNGKIVLPYH FT MIKIEQTSTFPALTVSKPLAEKETIWIKHQISSIDRITRAAEKLDNNKNVKINYQTSRM FT LMYSDYKKCSSSDEQLVRKWHTNSYNIIQEMSDETRAAYFELEEDMKKIMMTDDVPVAL FT SNSSTIDDVELDKLPNTGPLNNEDA" FT CDS 7619..8128 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:B8Y873" FT /protein_id="ACL36984.1" FT /translation="MDNDFLELLYRNKQPLCENNAIRYANKVDDLLYYQEFLVLKAIDE FT LIFMRNCQQTYNQVYSRGSDLNRFYGLQLESEIKIEKLEDIRKQFLMHSDNNYCLHNNL FT PRGVQPPITSVYNGTTTFKGNYSENYLCSLDSRIVEKRSKELLELRQALSESLPLLSSS FT EDENSD" XX SQ Sequence 8222 BP; 3038 A; 1659 C; 1339 G; 2186 T; 0 other; tggtatcaga gcttcaggct ctatccttgg gaacaacttt ttccttgatt gtgaaaacaa 60 cttagtaaat ttcttaactt gaaatcttac acttactttt cttaaaagga aaatgactga 120 tagaactgaa agttcttcaa accaaaacct atggtacata ggtgatggca cctcttatca 180 gtgttactta cagggccaat accctcatag ttttcactgt acaaactatg aactcctacc 240 agcagtagtc aaccaactac aggacggatt aaacttcctt atacttaata gtataaagaa 300 agactctcag gaaaaacctg taaacaatta tctagaaata gataatgaaa ttaaaaatct 360 atttttaatt caagacaaaa agatcgaaga tcttaactct aaacttgata aagttttaca 420 acttcaaacg gatattttaa aaaggattta aaatgtctat tgatatcact tgttacgatg 480 atgtaacaca acttgtatct tttaacgaag atcaaaaata ctattcatca gatgtgatga 540 tagatactgc aaaagctaga aagcttgcaa aacatgatgc aattaccatc aagagtggtg 600 agaacatcaa aacagctata cttaaatcga tctttggacg attaagtaga gaaaacatta 660 tttacctcgg taaatttgta caagaacatc ccattgagat atctcaagca gatggtctaa 720 ctggtctaaa cctagtcact aatcaccaat taagtgaacg gttagccaag atatctgacc 780 acgacaggtc aaaaatatct tacctacata taggtacaat acagatcata cttaaatcta 840 cgtttaagga aatgatcaac tcacctattg atctcgcgat catagacaac aggataaaaa 900 cttctgattg tataatcgga attatccaag gaaacttagc ctatcaggtt ataaagttta 960 atgttaattt aaactacgct attcctttgg aatcaaaaaa cattaccaat tcaattggta 1020 ttctttacaa attccataac aaggaattaa tggaaaaagg agatcatcct ttctctataa 1080 cctatgcagt cggatactgc ctcactaata gtcatcacag catagactat attaaacacg 1140 acaagataat tgtcgacaaa ctttttgacg aagtaagcac tagaaatatg cacttctcat 1200 tcaaaaacga taagactccg ttcaggactc ttaaaagaac tcctagtagt aggataccta 1260 ctcttaaact aacaagtaat gcagattatg ccaacacatc cattggagca ttaccgatac 1320 aaccgatcag aagatcgatt actttaccta atgaacaggt acaacaaatc gcagaaggcg 1380 tctccaactt gacagaaatt ataaacaaac gtttataatg gatgcctcct tcggaaaacg 1440 aaatgaggat gaatccctca ctcactatct cgaaagagtt cttcctacag tcatcaacca 1500 ggtaactgac atgactcaaa ttttaaaaga acttttcgac aaaacaggta ttcaaaccta 1560 cgaaactgaa tttgaaagat atttcaaatc aaaacaattc tctaaattta gagacaacga 1620 atgcttagat agcaaaatgg aacatacaat ggttatacct ttgaatgtcc caactattcc 1680 agattactct ggacaaacta ttgaatgtag ctgttccaat aaaggaaact ggccacattt 1740 gcttcattca ggaaatcccg tcctgaatac acaatcggat atactcgtat atctgagaaa 1800 gaccgtttct gatattcaga agcaacaagt gtttgatcat tcaaaccttg tacaattaat 1860 tcaacatgaa ttaaaaaact tgaaatgcga gtgcaactgt gaaaaagcat cagcatcaat 1920 caactgggaa atttctccca attttacaca ggacactgga aaacttttta tcactgataa 1980 atgatttttc caattcttgt caaaactttt ataataatca gtggaagcca cacagtccac 2040 agatttatta aaaacatctc taaaccagag caaactgaac aattgtatcc acttatagat 2100 actaacgttt ctaacgagat cttgactcaa gaagtcatag acaatataca atcttttcag 2160 ataaaaactg aacaggatga accagttcaa gaaaaactgt atggctacga agatgacgaa 2220 gaagagattc tcgtagacaa cagctcttat ggaagcattc cagaagacga agacccggaa 2280 gaacgggcat acaatgaaga aggacaaggt tctggaatac cagaattcaa cgtcattcca 2340 aaaaacgaag gggcagaaca ctatgatccc tttaacgact ttcagagaaa ctatgattct 2400 gatagaagaa gatacccgag aggacacttc aatttctctg atctacgatt cccacgtgaa 2460 acaaacgtac ctctggagtt ccaacccaga agttacaaaa acagcacact tagtgtgtta 2520 aacattgact gtatagtcaa caaagcacaa gcaatcgacg actggattgc tgcaactgat 2580 gttatgatct taaccaatga agggttaaga aacaacatta aaaacgcatg ggcattcata 2640 acccatcttg tatccggaaa cattaccgaa tacatcaaca gacttaatga agaacaaaag 2700 aaaaagctct ttgaagagtc aaaagacgga cacgatctac tgagactatt tcgtgcagca 2760 ctatacgcag ccttcttagg aattgacatc aaaaacaatc ctgaagaagc acaactcaaa 2820 aaggaagaaa atgcaatgtg gagactcaac aacatttgca ttagcgacct ttgtttactt 2880 gatgaattcc actgtgaatt cgaaaaatac ttctatcaac tatcagttga taatcaagaa 2940 cgatacctac aggtatattc agacaagata cccggcgaag tcggttttga acatcgtcgt 3000 tcatggcgag aacgagatcc ctcgatcctt gacacgctcg gcggacgaaa acgctcactc 3060 gacgaataca tcgctcgaga atgcacaaga cgattactgt tcaaacaggt aaaacgtaca 3120 gcaaagattt gctgtaaacc aaacaatctt aacatccctg gtaactacgg atgttatcca 3180 acggttcctg ctaaaaatag gaacaaaaaa ctttttcaaa agaaaaaact taaacgattt 3240 aagaaaacaa atcgtaattc ttactacaaa gcaaaacctg cttttagacg aaagtttttt 3300 cgaaaacgaa aaacggttgt taaaccaaca acaaaaactg ccgataataa ggcaaaatac 3360 tgtcccaaag ggaaaccaaa ctgccgatgc tggctatgca aagaagaagg acactatgct 3420 aacgcatgtc ctaacaaaga aaagatagac tctaaacaag tcaaactttt cgaaactatc 3480 tatcttctcc aaggttttga acctatagaa gatgatgaaa acttgtcgga ttccgattcg 3540 atatattact taacagatga cgaaatcgaa gattactctt ctgatgaatc tgaatctgaa 3600 aactagtggt aaatccacaa aaactaaccc atacagtact tatgtaactg tcggttttta 3660 ctttaatgga tacaaaggtt tccatttaca cgcatatgtt gatacaggtg caacatcttg 3720 tacagcatcc ccacatataa ttccaacaga attatgggaa gaacttccca aaccaatatt 3780 ggtaaatatt gccaatgata ctaatatcga aattcgatat gtaactagaa acttaaaagt 3840 ttcgatgact gatacgaatg gtaataaaca tacgtttatt ataccaaccg tatatcaaca 3900 aaacacgggc atggatttta tttttggaca aaattttcta aaattatacc gcccttttac 3960 tcaagatctc tacgagattt atttaactcc aaaactttta aagtttaaaa tacaacagag 4020 agcttttaag caagcttctc ctggttttct tgatagtatt agaaagcaaa aacgtggtga 4080 gattatatca aagcacgcaa ctaatcctat caacatcaca aaacttgaag acaatctaag 4140 aattgtcgaa actatattgg aagattccaa tagcaaaact ttatcagagg tttctgatag 4200 taaaacttta tcagaggatt ctgatgatta ctttgtgtac tctatacaga gacataacac 4260 gatcgttaac gatctactta ctcaagcatg cagtgaaaat ccactggatg aaaacaaaaa 4320 ccataatggt ttacttgctg agattaagtt aattaatcca gccacaactg taaatgttaa 4380 atctatggca tactctccgg atgatgcagt agaaattaac aaacaaatac aggaactttt 4440 agaaataaaa gttatacgac catcacggtc acctcactcc tcaccatgct ttttggtgca 4500 gaatcacaac gagattaaac gtggtaaaaa acgtttagtt ataaactata aggctttgaa 4560 tgccgcaact atatccgatg gatatttact ccctaacaag gagactattc ttaccgctat 4620 acgtggaaga aaatacttct cgactcttga ctgtaagtca ggattctggc aaatacgttt 4680 gaatgaaaat tcaaaaccac ttactgcatt ctcttgccct atgggtcaat atgaatggaa 4740 cgttgtcccg tttggactaa aacaagctcc tggactattt caaaggttca tggacaattc 4800 ctttaaggaa tactctgcct tttgtgcagt ctacgtagat gacatacttg tcttctcaaa 4860 aacacttgat gaacattatg atcatctaga aactgtgctt agaaagtgca ttgaaactgg 4920 cataatcctt tctaaaaaga aagctgaggt tgctaaaact aaaatcaatt atcttggttt 4980 tactatctcc aatggagaaa ttgaacttca atctcatatc cttgagaata taaaactttt 5040 tccaagtaga attcctgata aaaaatcact acaaaggttt cttggaatac taacgtatgc 5100 agatcaatac atacgaaaac ttgccgaatg gcgaaaacct cttcagagaa aattgaagaa 5160 agatactgta tgggaatgga atgattccga tactcagtac gtggaaaaat ttaagagaaa 5220 tcttaaagaa ttcccaaaat tacaccatcc tttaccggat gaatacttga tcatcgaaac 5280 tgatgcatca catgaacact gggctggtgt cctaaagtcc cgagggactg acaacttaga 5340 acgactatgt cgttatacaa gcggatcatt caaacccgct gaaatcaact atcacagcaa 5400 cgaaaaagaa gtgcttgctg taaaaagaac tattacaaaa ttcaagggct atcttgcaag 5460 ttctgaattt ttagtacgaa cagacaacaa atactttacg tattttctac ggacgtccat 5520 aaaggatgac tacaaacaag gccgtttaat acggtggcaa cagtggttct cccactataa 5580 attcaacgtt gagcaccttg caggtactca caacttcact gccgattccc ttaccagaga 5640 attcgcaaac aaacctcctt gaaggaactt catggcatca ctagcagaaa tcaatgctgc 5700 tgaacaggct ctcctagcca aactcgaagg cctcataaaa gaggttaaaa ctgaattctc 5760 aaaattgaga aaaaatactg catcttcctc ttctgaaaaa gatcaaccac caaagaagat 5820 ccagaaggca gaagacaaaa cactttccct ccgtccaaat tacaaaagaa ttcttgaaca 5880 agaatttgat gaagacgaaa ggaaattcac tgttctggga aaaattcccc agaatcatgc 5940 taaacttgca gaactccctg ctttaccgct cattaagctc aacccagaag agcttaccag 6000 caaaaacttt ctcgaagcct tcaactttct tcgaacagca agtaaagaag actttgaaga 6060 aaaacatatc ttcccaacaa gaagaacaac taaagaagat cccagagcga tcatctttcc 6120 gatggcaatg ccatccgacg tatatgagct tttctgctta gggctcataa aaactattta 6180 ccttacaggt aaaaacgaaa ctatctctca ttttcccaac aaattcagac aggctgtcca 6240 gggatggatg aagagaacct ccactgagaa cgctgttctc accatacttt ccactatacc 6300 ggattggaaa aatggtaaga ttgttcttcc ctatcacatg ataaagatag aacaaacttc 6360 tacatttccg gctcttactg tcagcaaacc ccttgctgaa aaagaaacta tctggatcaa 6420 acaccagata agctcgatag atcgaatcac tcgagcagcc gaaaaacttg acaacaacaa 6480 aaatgtcaaa ataaactatc aaacatcccg gatgttgatg tactcggact acaaaaaatg 6540 tagttcatca gacgaacaac tcgtcagaaa gtggcataca aacagctaca acatcattca 6600 agagatgtct gacgaaacta gagctgcata ctttgaactc gaagaagaca tgaagaaaat 6660 catgatgacc gacgacgttc cggtagcact ctccaactca tcaacaattg atgacgtgga 6720 gcttgacaag cttccaaata ctgggcccct caataatgaa gatgcctgac taaaaggcgt 6780 ggccgacaat tgcttgcttt tactttaagc aaagcattta cttttagcac atgggttgct 6840 tttactttgc agaagattcc tgctttcact aaaggaggac agctactctc caccaaacgc 6900 aataatggaa gaagacgtaa gccatgacgt cagaagccca attattgtac ttatccttat 6960 tgtaagctcg tctatataag agcacctaga tgaagcatgt aagatataga aaaaattgta 7020 atctcttctc tgtactacta aactttcaat aaaattttaa tcttttgatt atgtcttcac 7080 aactccttat ggagtagaac ccttttgggg ttcttcaagg tcttgttcag aatgtctaag 7140 tagcaaaggg tacaggtgtt ctctattccg gcgaacaacc accgtgtaaa acctggaggc 7200 cattaaaagt acgcgtgtta gccaggaggg cgttgaagcg gaaaaaggct tggtcaagtg 7260 cacaagggta tgttgcggaa gacgagatgg gaccataacc cacagctgat gacaagaaca 7320 agatgaagaa gaactccatc tactaaacat aagagtaaga cttcttaatc atcaaacttt 7380 aaacttggtt taaaaactat gaactggacg ttcaacactc atcagagatt tctaaaagaa 7440 tctcttagac aacttgattt acaaataaat caaattcaac atcttctaaa cgaagaaacg 7500 actcgtctaa agcagacgaa atacaaacga gtaattcaaa ctcgaatttc tgggcttaaa 7560 actcaaaaga ctcttctttt aaaagaaaag aaaactcttg aaaatcaaat ctgttaacat 7620 ggataacgat tttctagaac ttttgtatag gaataaacaa cccctatgcg aaaacaatgc 7680 cataaggtat gcaaacaaag tagatgacct actttactac caagaattct tggtactaaa 7740 ggcaatcgat gaattaatat tcatgagaaa ctgccaacaa acttataacc aggtatatag 7800 ccgtggttca gatctaaacc gattttatgg tttacaactc gaatctgaaa taaagattga 7860 aaaacttgaa gacataagaa aacaatttct tatgcattca gacaataatt attgtttaca 7920 caataattta ccacgaggag ttcaacctcc aatcacttcc gtatataacg gaacaacgac 7980 ctttaaaggt aattactcag aaaactactt atgtagttta gattctagaa tcgttgaaaa 8040 acgatctaaa gaactacttg aactaagaca agctcttagt gaaagtcttc cgctactatc 8100 ttcttctgaa gatgaaaact ctgactaact aaaactgttt cgcagatttt agccaaaact 8160 cacccttttt attcatttca aaaaaccatt tttgaaaaat aaaatgagga cccctttttt 8220 cc 8222 //