ID FJ489600; SV 2; linear; genomic RNA; STD; VRL; 3023 BP. XX AC FJ489600; XX DT 30-DEC-2008 (Rel. 98, Created) DT 04-MAR-2011 (Rel. 108, Last updated, Version 4) XX DE Tomato necrotic ringspot virus isolate TT1 segment S RNA, complete DE sequence. XX KW . XX OS Tomato necrotic ringspot virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; unclassified Tospoviridae. XX RN [1] RP 1-3023 RX DOI; 10.1007/s00705-010-0856-0. RX PUBMED; 21104282. RA Seepiban C., Gajanandana O., Attathom T., Attathom S.; RT "Tomato necrotic ringspot virus, a new tospovirus isolated in Thailand"; RL Arch. Virol. 156(2):263-274(2011). XX RN [2] RP 1-3023 RA Seepiban C., Gajanandana O., Chiemsombat P., Attathom T., Attathom S.; RT "Serological and molecular characterization of Tomato necrotic ringspot RT virus"; RL Unpublished. XX RN [3] RP 1-3023 RA Seepiban C., Gajanandana O., Chiemsombat P., Attathom T., Attathom S.; RT ; RL Submitted (25-NOV-2008) to the INSDC. RL Department of Plant Pathology, Faculty of Agriculture, Kasetsart RL University, Kamphaeng Saen Campus, Malai Maen Road, Kamphaengsaen, Nakhon RL Pathom 73140, Thailand XX RN [4] RC Sequence update by submitter RP 1-3023 RA Seepiban C., Gajanandana O., Chiemsombat P., Attathom T., Attathom S.; RT ; RL Submitted (28-SEP-2009) to the INSDC. RL Department of Plant Pathology, Faculty of Agriculture Kasetsart University, RL Kamphaeng saen Campus, Nakhon Pathom 73140, Thailand XX DR MD5; ac273070be9c3e56e1191c4e060cc5b5. DR EuropePMC; PMC3371012; 22715400. XX CC On Oct 30, 2009 this sequence version replaced gi:218664724. XX FH Key Location/Qualifiers FH FT source 1..3023 FT /organism="Tomato necrotic ringspot virus" FT /segment="S RNA" FT /host="Lycopersicon esculentum (tomato)" FT /isolate="TT1" FT /mol_type="genomic RNA" FT /country="Thailand:Kamphaeng Saen, Nakhon Pathom" FT /collection_date="18-Feb-2008" FT /note="PCR_primers=fwd_name: 3'G4S, rev_name: UHP; FT PCR_primers=fwd_name: 3'G4S, rev_name: J13" FT /db_xref="taxon:584711" FT CDS 66..1421 FT /codon_start=1 FT /product="NSs protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:D0QF42" FT /protein_id="ACY38609.1" FT /translation="MSNVFATAAEFLKTYGTKDTRSVNDCYSMYSGTGKNFLNLFMHSN FT PSTKTAFSVNELGRNEDVKLHESEFLESDHCYKHFEKFGLDFVFCGHTMNVVVTKPDIK FT NTGCRFVQHNQIFIPNSTTSEHVEEDLQKERFHEITNIKTNTLTPSAWATELCIRNNFF FT ISMGGNYRLEYGYPVMGKTVSYWRENLQKEKMLSVKQKVIQGTSRLTNRVLSPSAVKAI FT QIASELVQSETTILSARQLLTENIKSQYRICFNSVLEEGSFTRTYKVRAGQDVRVICIY FT AKTVIDSSYESTTLIIKIVNKSISNDYSDVLPVHSDCKYVSSRLGITDVFNGDPNYNQI FT IARSLVNMHTLFALELSKHLRKKVIVFTLYEKQLTKKTMPSPTRDLSYLEDSDGNVYFT FT SETLKTLPKSISAIIYLKGVAPCCWRESIEDQHFYVEYRPPADSTETASGSS" FT gene complement(2112..2957) FT /gene="N" FT CDS complement(2112..2957) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:B8Y670" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:B8Y670" FT /protein_id="ACK99533.1" FT /translation="MSNVRKTLSNEKIKELLAGGEADIEIELDEATPGFSFSKFYDENK FT QDIFGKFTFNNGITILKSRKQIFAACKSNQFVFCGKQIAQNSDTADEKTWTFKRTEAVL FT RVLMAKMVEECTTQKLQQDMYSKLMSLPMVIAYGLNVPPNFDSCATRLMLCVGGPLPLL FT SSLPAMAPIAFSLAYFQNVKKQNLGIKNFSTYEQLCKVARVCDAAQVEFTGDLKKLFES FT ATAILKTSSPGTASSISLKKYSEQIAHLEKAFGSKPVIDDFGSNSVSTSKPTRRGSIGL FT " XX SQ Sequence 3023 BP; 986 A; 545 C; 533 G; 959 T; 0 other; agagcaatca gggcaaaaga tataactata aacactacat caagtaaaca agaaatacta 60 tcaccatgtc taacgtcttt gcaactgctg ctgagttttt gaaaacttat ggcactaagg 120 acacacgttc tgttaacgat tgctattcta tgtactctgg tactggaaag aatttcctga 180 atctgtttat gcacagtaat ccaagtacaa agacagcttt cagtgttaac gagttgggta 240 ggaatgagga tgtcaagctt catgaatcag aatttctgga aagtgatcac tgttacaaac 300 attttgagaa atttggttta gattttgtct tctgtggcca cacaatgaat gttgtggtta 360 ccaaacctga cattaagaac acggggtgca gatttgttca acacaaccag atctttattc 420 cgaacagcac cacttctgag catgtggaag aagatttgca aaaagaaaga ttccatgaaa 480 tcactaacat caaaaccaat actttaactc caagtgcttg ggctacagaa ttgtgtatta 540 gaaacaactt ctttatttct atgggcggta attacaggct agaatatggc tatcctgtga 600 tggggaaaac tgtttcttac tggagagaaa acctccaaaa ggaaaaaatg ctatctgtga 660 agcaaaaggt gatccaagga acatctcgtc ttacaaacag ggttttgtct ccatctgcag 720 tgaaagccat tcagatagca tcagagcttg tccagagtga aaccacaatt ctttctgcta 780 gacaattgct gacagaaaat ataaaatcac agtacaggat ttgttttaac agtgtgctag 840 aagagggttc ctttacaagg acttacaaag ttcgagctgg tcaagatgtt agagtaattt 900 gcatatatgc caagacagtt attgattcat catatgaatc gactacttta atcattaaaa 960 ttgttaacaa atctatctca aacgactata gtgacgtgct gccagttcac tctgactgca 1020 agtatgtttc atctagactc ggtataacag atgtgttcaa tggtgatcct aactacaacc 1080 agattatagc aagaagtctt gtcaacatgc acactttgtt tgctttagaa ttgtccaagc 1140 acttgagaaa gaaagtcatt gttttcacgc tttatgaaaa acagctgaca aagaagacaa 1200 tgccatctcc aactagagat ttgtcatatc ttgaagatag tgatggtaat gtgtacttta 1260 catcagaaac attaaagaca ttgccaaaat caatctcagc aatcatctac ctaaaagggg 1320 ttgcgccatg ctgctggaga gagtctatcg aagatcaaca cttctatgtc gagtacagac 1380 cacctgctga tagtacagaa actgcatctg ggagctcata gtcaattaga atgtttgatc 1440 aaggtgtatt atttttatag gtagttgtta gaaagcacta ctagatatta ggtataatct 1500 taaataaaca aatatataca ttcataatta aagttaatcc gttaatttct gtcctagttg 1560 tatgttcaaa caattaatta ataaaaataa aataaataag tcaaataaaa acaaataaaa 1620 caaaaaacca aacaaaaaaa ttaaaaacaa aataaaaaca aaaaaagacc cttcggggca 1680 ttttggggag acagatggtt tatcgtatgt cattggaatt gtcttcattg taaagatgta 1740 cattttgcta gaattataaa cacaatagtc gataatctat tggtccatta gacttgattg 1800 gtgtctttat gataaagcaa tgacacaagt ttactgagat tataattagt gtataactct 1860 cgccaaatgt gccccgaagg gtcttttttt tgtttttgtt gttttttgtt tttgtatttt 1920 gtttttgttt tatttgttta tttgtatatt aagtaacttt atttatatta cacactcaac 1980 agacatattc aaattacaaa ctaaacttat ataatttata tgtattctaa aacctttacg 2040 gaatatatca aacacacaca gacaaacaca cactttcact atctgatata aatgatcctg 2100 taatgtaatc tttacagtcc tatacttcct ctcctagttg gcttgctagt actcacacta 2160 ttgctcccaa aatcatcaat gactggcttg gatccaaatg ctttctcaag atgagcaatc 2220 tgttctgagt atttcttcaa ggatattgag ctagctgttc caggtgagct agtcttcaaa 2280 atagctgttg cagattcgaa caatttcttc aaatcaccgg taaattcaac ttgagcagca 2340 tcacacactc gagcaacctt acatagctgt tcatatgtag aaaagttttt tattccgaga 2400 ttctgttttt tgacattctg gaaatatgca agagagaaag ctataggtgc cattgcaggg 2460 agactggaca ataaaggcaa aggaccgcca acacacagca tcagcctggt tgcacaggaa 2520 tcaaaattgg gaggtacatt caacccgtaa gcaataacca taggaagtga cataagtttt 2580 gaatacatat cttgctggag tttctgggtt gtgcattctt caaccatctt tgccatgaga 2640 actctaagga cagcctcagt tctcttgaat gtccatgtct tttcatcagc agtgtcagaa 2700 ttttgtgcta tctgctttcc acaaaagaca aattgattgc tcttgcaggc tgcaaatatc 2760 tgctttctac tctttagtat agttattcca ttgttgaacg taaattttcc gaagatgtcc 2820 tgtttgtttt catcatagaa tttagaaaag ctgaatcctg gtgtagcttc atcaagctct 2880 atttcaatgt ctgcttctcc tccagctagc aattccttga ttttctcgtt tgacaaggtt 2940 ttcctaacgt tagacatgct gtttacgggt gaaacaattt attagtagtt ttcagaaata 3000 ttcttttttg cctcgattgc tct 3023 //