ID FJ468356; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC FJ468356; XX DT 24-DEC-2008 (Rel. 98, Created) DT 24-DEC-2008 (Rel. 98, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate X 8 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Haq Q.M.I., Malathi V.G.; RT "Complete nucleotide sequence of DNA-A of Tomato leaf curl New Delhi virus RT from Pune"; RL Unpublished. XX RN [2] RP 1-2739 RA Haq Q.M.I., Malathi V.G.; RT ; RL Submitted (17-NOV-2008) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, New RL Delhi 110012, India XX DR MD5; 3ff690fd6bff708dd4a3dbc24a59fccb. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="X 8" FT /mol_type="genomic DNA" FT /country="India:Pune, Maharashtra" FT /collection_date="Apr-2008" FT /note="causes severe symptoms in popular tomato cultivars" FT /db_xref="taxon:223347" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="movement protein" FT /db_xref="GOA:B7UBE4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B7UBE4" FT /protein_id="ACK44127.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLIRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWRSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="structural encapsidating protein; involved in vector FT transmission" FT /db_xref="GOA:B7UBE5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B7UBE5" FT /protein_id="ACK44128.1" FT /translation="MVKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVSKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT CDS complement(310..795) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:B7UBE6" FT /protein_id="ACK44129.1" FT /translation="MHVLHRCCARFIVKHIKHFPEILGRSCRTTVTNQKKHDTVSMVLC FT LDVFIHPYLSQHIHGFHTKSLPYAMCEASSSGNITNTHDFANMRHIVPGFKGLHFTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSAIGAVEVETSAYLRCGR" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:B7UBE7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B7UBE7" FT /protein_id="ACK44130.1" FT /translation="MITDSRTGEYITADRTESGVYTWEIKNPLYFKILKHNSRPFLTQH FT DIITIQIQFNNNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVIERTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator" FT /note="PTGS suppressor" FT /db_xref="GOA:B7UBE8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B7UBE8" FT /protein_id="ACK44131.1" FT /translation="MQSSSHSKNHSIPVAKTTLPQKKKKIIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGVHHCGSYREWRIYLGNQKSPVFQNFETQQQALPNTARHNHDSNTIQQQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2589) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiation protein" FT /db_xref="GOA:B7UBE9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B7UBE9" FT /protein_id="ACK44132.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNVQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPEDLVDWVTSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLSLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLHEEKNAALKQWAIKNAIFITLEEPL FT YSGRENNAPAEEEEDHSQEAS" XX SQ Sequence 2739 BP; 747 A; 580 C; 608 G; 804 T; 0 other; accgaatggc cgcgcaaatt ttttggtggg ccctcaacca atgaaattca cgctacatgg 60 cttatttagt gcgtggggat caataaatag acttgctcac caagtttgga tccacaaata 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgttag 180 ctgtaaaata tctccaagag atagaaaaga actattcacc agacacagtc ggctacgatc 240 ttatccgaga tctcattctt gttctccgag caaagaacta tggtgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggcgctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaagt gcagtccttt gaatccaggc acgatgtgtc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggaactggcc tcacacatcg cgtagggaag 600 cgattttgtg tgaaatccgt gtatgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaagaacc atactaacag tgtcatgttt tttttggttc gtgaccgtcg tcctacagga 720 tctccccaag atttcgggga agtgtttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagca agtttgttag ggttaataat 900 tatgtagttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgcac tcatgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcaa gctttatatc atatgaagtc 1080 catacatcaa tcgttcgctc tattacatta tctaatacat gataaaccgc tcttattaca 1140 ttataaattc ctattacacc taacatgtcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg ttgttgaatt gtatttgaat cgtgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgttg tgtttcaaaa ttttgaaata caggggattt 1380 ttgatttccc aggtatatac gccactctct gtacgatccg cagtgatgta ctcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatatagtac gaacaaccac acggtagatc 1500 aactcgcctc ctgcgaatga tcttcttctt cttctgcggg agcgttgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ttgcattctt gattgcccac tgcttcagtg 1620 ctgcattctt ttcttcgtgc agatattcct tatagctgct atttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagataatgg ggatcgacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga ctaagatgtc 1860 cgcacaagta attgtgtgga cctaagcaac gagcccacat tgttttacca gttctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac acaacatttg 1980 acgtaaccca atcgacgagg tcttccggaa ctctgtcgaa ggatgaaatg gaaaatggag 2040 aaacataaac ctccgaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgaa 2100 attgcagaac gtaatccttt ggggctaatt cctttaatac tttcaaagca tcatctttat 2160 ttcccgtgtt aatcgcctgg gcatatgcat cgttcgccgt ttgttgacca ccacgggcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccatctttg tcgatgtatt 2280 ttttgacgtc cgacgctgat ttagctccct gaacgttcgg atggaaatgt gctgaccggc 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatctt cgtgaagctc tctacagatc ttgatgaatt 2460 tcttcttcgt cggggtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tggcatttac tctaaaacga cgtggcgaag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaactta tctatgtgat tggtgtctgg 2640 agtcctatat ataggtaaga caccatatgg cattattgta attttgaaaa gaaaattact 2700 ttaattcaaa ttccctaaag cggccattcg tataatatt 2739 //