ID FJ461343; SV 1; linear; genomic RNA; STD; VRL; 6435 BP. XX AC FJ461343; XX DT 16-DEC-2008 (Rel. 98, Created) DT 30-JUN-2009 (Rel. 101, Last updated, Version 2) XX DE Potato virus X from Iran, complete genome. XX KW . XX OS Potato virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6435 RX DOI; 10.1007/s11262-009-0371-0. RX PUBMED; 19484407. RA Esfandiari N., Kohi-Habibi M., Hohn T., Pooggin M.M.; RT "Complete genome sequence of an Iranian isolate of Potato virus X from the RT legume plant Pisum sativum"; RL Virus Genes 39(1):141-145(2009). XX RN [2] RP 1-6435 RA Esfandiari N., Kohi-Habibi M., Hohn T., Pooggin M.M.; RT ; RL Submitted (12-NOV-2008) to the INSDC. RL Institute of Botany, University of Basel, Schoenbeinstrasse 6, Basel, RL BaselStadt 4056, Switzerland XX DR MD5; 5e1b62afd6a79029159e4121c8fa1dcb. DR EuropePMC; PMC5377869; 28466060. DR RFAM; RF00184; PVX_3. XX FH Key Location/Qualifiers FH FT source 1..6435 FT /organism="Potato virus X" FT /host="Pisum sativum" FT /isolate="Iran" FT /mol_type="genomic RNA" FT /country="Iran" FT /collection_date="Jun-2004" FT /db_xref="taxon:12183" FT CDS 85..4455 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRP; p166; RNA-replicating protein" FT /db_xref="GOA:B7U9M3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B7U9M3" FT /protein_id="ACJ68405.1" FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM FT RRNPRIKDIFHNVAIEPRDVARYPKETIIEKLTEITTDTAYISDTLHFLDPSYIVETFQ FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQ FT WLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR FT TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS FT SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFG FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDLL FT DCFTRMPAYAVNAEEDLAAIRKTPEMDAGQEAKEPAGDRNQYSNPAETFLNKLHRKHSR FT EVKHQAVKKAKRLAEIQESMRAEGAAESSEMSGGMGAIPSNAELPSTNDARQGLTLPIT FT KPVPARWEDASLTDSSVEEEQVKLPGKEAVETATQQAIEGLPWKHWIPQLNAVGFKALE FT IQRDRSGTIIMPITEIVSGLEKEDFPEGTPKELARELLVMNRSPATIPLDLLRARDYGS FT DVKNKRIGAITKTQATSWGEYLTGKIESLTERKVATCVIHGAGGSGKSHAIQKALREIG FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYVE FT ALVCFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD FT LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRKLYMGTGRNDTFTYAGCQGLTK FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV FT REQALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHSDSHGHSNC FT VQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV FT TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS FT AWALNNWNFGRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF FT HRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC FT QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL" FT CDS 4486..5166 FT /codon_start=1 FT /product="triple gene block protein 1" FT /note="TGBp1; p25; involved in movement and suppression of FT silencing" FT /db_xref="GOA:B7U9M4" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:B7U9M4" FT /protein_id="ACJ68406.1" FT /translation="MDILIISLKSLGYSRTSKSLDSGPLVVHAVAGAGKSTALRKLILR FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRNSYQALFADPYQA FT PEFSLEPHFYLETSFRVPRKVADLIAGCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI FT DEESETTLSRHGVDFVKPCQVTGLEFKVVTIVSAAPIEEIGQSTAFYNAITRSKGLTYV FT RAGT" FT CDS 5147..5494 FT /codon_start=1 FT /product="triple gene block protein 2" FT /note="TGBp2; p12; involved in movement" FT /db_xref="GOA:B7U9M5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B7U9M5" FT /protein_id="ACJ68407.1" FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN FT IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKHISQRNH FT TCACGNNHSSH" FT CDS 5427..5639 FT /codon_start=1 FT /product="triple gene block protein 3" FT /note="TGBp3; p8; involved in movement" FT /db_xref="GOA:B7U9M6" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B7U9M6" FT /protein_id="ACJ68408.1" FT /translation="MEVNTYLNATILVLVVTIIAVISTSLVRTEPCVIKITGESITVLA FT CKLDAETIRAIADLKPLSVERLSFH" FT CDS 5650..6363 FT /codon_start=1 FT /product="coat protein" FT /note="CP; p27; RNA-encapsidating protein" FT /db_xref="GOA:B7U9M7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B7U9M7" FT /protein_id="ACJ68409.1" FT /translation="MSAPASTTQTTGSTTSTTTKTAGTTPATASGLFTIPDGDFFSTAR FT AIVASNAVATNEDLSKIEAIWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI FT TGTTTAEAVVTLPPP" XX SQ Sequence 6435 BP; 1965 A; 1528 C; 1482 G; 1460 T; 0 other; gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt gttacacacc 60 cgcttggaaa agcaagtcta acaaatggcc aaagtgcgcg aggtttacca atcctttaca 120 gactccacca caaaaactct catccaagat gaggcttata gaaatattcg tcccatcatg 180 gaaaaacata aactagctaa cccttacgct caaacggttg aagcagctaa tgatctagag 240 gggttcggca tagccaccaa tccctatagc attgaattgc atacacatgc agcagctaag 300 accatagaga acaaactttt agaggtgctg ggttccatcc taccacaaga acctgttaca 360 tttatgttcc ttaaacccag gaagctaaac tatatgagaa gaaacccgcg aatcaaggac 420 atcttccaca atgttgccat tgaaccgaga gacgtagcaa ggtaccccaa ggaaacaata 480 attgaaaagc tcacagagat cacaacggac acagcataca ttagtgacac tctgcacttc 540 ttggatccga gctacatagt ggagacattc caaaactgcc ccaaattaca aacattgtat 600 gcgacattag ttctccccgt ggaggcagcc ttcaaaatgg aaagcactca cccgaacata 660 tacagcctca aatacttcgg agatggtttc cagtatatac caggcaacca tggtggtgga 720 gcataccatc atgaatttgc tcatttacaa tggctcaaag tgggaaagat caagtggagg 780 gaccccaaag atagctttct aggacatctc aattacacga ctgagcaggt tgagatgcac 840 acagtgacag tacagttgca ggaatcgttc gcggcaaacc acttgtactg catcaggaga 900 ggagacttgc tcacaccgga ggtgcgcact tttggccaac ccgacaggta tgtgattccg 960 ccacagatct tcctcccgaa agtccacaac tgcaagaagc cgattcttaa gaaaactatg 1020 atgcagctct tcttgtatgt taggacagtc aaggtcgcaa aaaattgtga catttttgcc 1080 aaagtcagac aattaattaa gtcatctgac ttggacaaat attctgctgt ggaactggtc 1140 tacttagtaa gctatatgga gttcctggcc gatttacaag cgaccacttg cttctcagac 1200 acactttctg gtggcttgct aacaaagacc cttgcgccgg tgagggcttg gatacaagag 1260 aaaaagatgc agctgtttgg tcttgaggat tacgcgaagt tagtcaaagc agttgatttc 1320 cacccagtgg atttttcttt taaagtggaa acttgggact tcagattcca ccccttgcaa 1380 gcgtggaaag ccttccgacc aagggaagtg tcggatgtag aggagatgga aagtttgttc 1440 tccgatgggg acctgcttga ttgcttcaca agaatgccag cttacgcagt aaacgcagag 1500 gaagatttag ctgcaatcag gaaaacgcct gagatggatg ctggtcaaga agctaaagaa 1560 cctgcaggag acagaaatca atactcaaac cctgcagaaa ccttccttaa caagctccac 1620 aggaaacaca gtagggaggt gaaacatcag gccgtaaaga aagccaaacg cctagctgaa 1680 attcaggagt ccatgagagc tgagggtgcg gccgaatcaa gtgagatgag cgggggcatg 1740 ggggcaatac ccagcaacgc cgaacttccc agcacgaatg atgccagaca aggactcaca 1800 ctcccaatca ctaaacctgt tcctgcaagg tgggaagatg cttcactcac agactccagt 1860 gtggaagagg agcaggtgaa actccctggg aaagaagccg ttgaaacagc aacgcaacaa 1920 gccatcgaag gactcccttg gaaacactgg attcctcaac taaatgctgt tggattcaag 1980 gcgctggaaa ttcagaggga taggagtggg acaataatca tgcccatcac agaaatcgtc 2040 tccgggttgg aaaaagagga ctttccggaa ggaactccaa aagagttggc acgagaattg 2100 ctcgttatga acagaagccc tgccaccatc cctttggacc tgcttagagc cagagactac 2160 ggcagtgatg tgaagaacaa gagaattggt gccatcacaa agacacaagc aacaagttgg 2220 ggcgagtacc taaccggaaa gatagaaagc ctgactgaga ggaaagttgc aacttgtgtc 2280 atccatggag ctggaggctc tgggaaaagt catgctatcc agaaggcatt gagagaaatc 2340 ggcaagggct cagacatcac tgtagtcctg ccgaccaatg aactgcgact agattggagt 2400 aagaaagtgc ccaacactga gccatatatg ttcaagacct atgaaaaggc gttaattggg 2460 ggaacaggca gtatagtcat ctttgatgat tactcaaaac ttcctcccgg ttacgtagaa 2520 gccttggtct gtttctactc taaaatcaag ctagtcattc taacaggaga tagcagacag 2580 agcgtctacc atgaaactgc tgaggacgcc tccatcaggc atttgggacc agcgacagag 2640 tacttctcaa aatactgccg atactatctc aatgctacac accgcaacaa gaaagacctt 2700 gcgaacatgc tcggcgtcta cagtgagaga acgggagtta ccgaaatcag catgagcgcc 2760 gagttcttag aaggaatccc aactttagta ccctcggatg agaagagaaa gctgtacatg 2820 ggcaccggga ggaatgacac gttcacatac gctggatgcc aggggctaac taagccgaaa 2880 gtacaaatag tgttggacca caacacccaa gtgtgtagcg cgaatgtgat gtacacggca 2940 ctttctagag ccaccgacag gattcacttc gtgaacacaa gtgcaaactc ttcggccttc 3000 tgggaaaagt tagacagcac cccttatctc aagactttcc tatcagtggt gagagaacaa 3060 gcactcaagg agtacgagcc ggcagaagca gagccaattc gagagcctga gccccagaca 3120 cacatgtgtg tcgagaatga ggagtccgtg ctagaagagt acaaagagga actcttggaa 3180 aagtttgaca gagagatcca ctctgactcc catggtcatt caaactgtgt ccaaactgaa 3240 gacacaacca ttcagttgtt ttcgcatcaa caagcaaaag atgagaccct cctttgggcg 3300 actatagatg cgcggctcaa gaccagcaat caagagacaa acttccgaga attcttgagc 3360 aagaaggaca ttggggatgt tctgtttttg aactaccaaa aagctatggg tttgcccaaa 3420 gagcgtattc ctttttcaca agaggtctgg gaagcttgtg cccacgaagt gcaaagcaag 3480 tacctcagta agtcaaagtg caacttgatt aatgggactg tgagacagag cccagatttt 3540 gatgaaaaca agattatggt attcctcaag tcgcagtggg tcacgaaggt ggaaaaacta 3600 ggtctaccca agattaagcc aggtcaaact atagcagctt tttatcagca gactgtgatg 3660 ctttttggaa ccatggctag gtacatgcga tggttcagac aggctttcca gccaaaagaa 3720 gtcttcataa actgtgagac cacgccagaa gacatgtctg catgggcctt gaacaactgg 3780 aatttcggca gacctagctt ggctaatgac tacacagctt ttgaccagtc tcaggatgga 3840 gctatgttgc aatttgaggt gctcaaagcc aagcaccact gcataccaga ggaaatcatc 3900 caagcataca tagacattaa gaccaatgca cagattttcc taggcacatt gtcaattatg 3960 cgcctgactg gtgaaggtcc cacttttgat gcaaacactg agtgcaacat agcttacacc 4020 catacaaagt ttgacatccc ggccggaact gctcaagtct atgcaggaga cgactcagca 4080 ctggactgcg ttccagaagt gaagcatagt ttccacaggc ttgaagacaa attactcctc 4140 aagtcaaagc ccgtaatcac gcagcaaaag aaaggcagtt ggcctgagtt ttgtggttgg 4200 ttgattacac caaaaggggt aatgaaagac ccgattaagc tccatgtcag cttaaaattg 4260 gccgaagcta agggtgaact caagaaatgt caagattcct atgaaattga tctgagttat 4320 gcctatgacc acaaggactc tctgcatgac ttgttcgatg agaaacagtg tcaggcacat 4380 acactcactt gcaggacact aatcaagtca gggaggggca ctgtctcact tccccgcctc 4440 agaaactttc tttaaccgtt aagttacctt agagatttga ataagatgga tattctcatc 4500 attagtttga aaagtttagg ttattctagg acctctaaat ctttagattc aggacctttg 4560 gtagtacatg cagtagccgg agccggtaag tccacagccc taaggaagtt gatcctcaga 4620 cacccaacat tcaccgtgca tacacttggt gtccctgaca aggtgagtat cagaactaga 4680 ggcatacaga agccaggacc tattcctgag ggcaatttcg caatcctcga tgagtatact 4740 ttggacaaca ccacaaggaa ctcataccag gcactttttg ctgaccctta tcaggcgcct 4800 gagtttagcc tagaaccaca cttctacttg gaaacctcat tccgagttcc gaggaaagtg 4860 gcagacttga tagcaggttg tggtttcgat ttcgagacca actcacagga agaagggcat 4920 ttagagatca ctggtatatt caaagggccc ctacttggga aggtgatagc cattgacgag 4980 gagtctgaga caacactgtc caggcatggt gttgattttg ttaagccctg ccaagtgact 5040 ggacttgagt tcaaagtagt cactattgtg tctgccgcac cgatagagga aattggccag 5100 tccacagctt tctacaacgc catcaccagg tcaaagggat tgacatatgt ccgcgcaggg 5160 acatagattg accgctccgg tcaattctga gaaagtgtac atagtattag gtctatcatt 5220 tgctttagtt tcaattacct ttctgctttc tagaaatagt ttaccccacg tcggtgacaa 5280 cattcacagc ttgccacacg gaggagctta cagagacggc accaaagcaa tcttgtacaa 5340 ctccccaaat ctagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc 5400 cgttttgcta ctgactttac tgatctatgg aagtaaacac atatctcaac gcaaccatac 5460 ttgtgcttgt ggtaacaatc atagcagtca ttagtacttc cttagtgagg actgaacctt 5520 gtgtcatcaa gattactgga gaatcaatca cagtgttggc ctgcaaatta gatgcagaaa 5580 ctatcagagc cattgccgat ctcaagccac tctccgttga acggttaagt ttccattgat 5640 actcgaaaga tgtcagcacc agctagcaca acacagacca cagggtcaac tacctcaact 5700 accacgaaaa ctgcaggcac aactcctgcc acagcttcag gactgttcac catcccggat 5760 ggggatttct ttagtacagc ccgtgccata gtagccagca atgccgttgc aacaaatgag 5820 gacctcagca agattgaggc tatttggaag gacatgaagg tgcccacaga cactatggca 5880 caggccgctt gggacttagt cagacactgt gctgatgtgg gctcatctgc tcaaacagaa 5940 atgatagata caggtcccta ttccaacggc attagcagag ctagactggc tgcagcaatt 6000 aaagaggttt gcacacttag gcaattttgc atgaagtatg ccccagtggt atggaactgg 6060 atgttaacca acaacagtcc acctgctaac tggcaagcac aaggtttcaa gcctgagcac 6120 aaattcgctg cattcgactt cttcaatgga gtcactaacc cagctgccat catgcccaaa 6180 gaggggctca tccggccacc gtctgaagct gaaatgaatg ctgcccaaac tgctgccttt 6240 gtgaagatta cgaaggccag ggcgcaatcc aacgactttg ccagcctaga tgcagctgtc 6300 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct cccaccacca 6360 taactacgtc tacataaccg acgcctaccc cagtttcata gtattttctg gtttgattgt 6420 atgaataata taaat 6435 //