ID FJ457098; SV 1; linear; genomic RNA; STD; VRL; 6293 BP. XX AC FJ457098; XX DT 29-DEC-2008 (Rel. 98, Created) DT 16-JAN-2010 (Rel. 103, Last updated, Version 2) XX DE Pepino mosaic virus isolate 1806 replicase, triple gene block protein 1 DE (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 DE (TGBp3), and coat protein genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6293 RX DOI; 10.1111/j.1365-3059.2008.02018.x. RX AGRICOLA; IND44204392. RA Hanssen I.M., Paeleman A., Vandewoestijne E., Van Bergen L., Bragard C., RA Lievens B., Vanachter A.C.R.C., Thomma B.P.H.J.; RT "Pepino mosaic virus isolates and differential symptomatology in tomato"; RL Plant Pathol. 58(3):450-460(2009). XX RN [2] RP 1-6293 RA Hanssen I.M., Paeleman A., Vandewoestijne E., Van Bergen L., Bragard C., RA Lievens B., Vanachter A.C.R.C., Thomma B.P.H.J.; RT ; RL Submitted (10-NOV-2008) to the INSDC. RL Scientia Terrae Research Institute, Fortsesteenweg 30a, RL Sint-Katelijne-Waver 2860, Belgium XX DR MD5; 0b786f065f599396b6ef77f7683ed542. DR EuropePMC; PMC3132167; 21702943. XX FH Key Location/Qualifiers FH FT source 1..6293 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="1806" FT /mol_type="genomic RNA" FT /country="Belgium" FT /collection_date="Sep-2006" FT /note="genotype: EU mild" FT /db_xref="taxon:112229" FT CDS 1..4320 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:B8XXN7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B8XXN7" FT /protein_id="ACJ74171.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVITTHTAIGQAISNAAATYKERKQLTQLVKKGTISLADFEQREPEIT FT YTEFEPETRPQVDCVTNYNNAVKNLGLSELDEQPQCSSSNSHLPCNEISLAMTDDDNAA FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ FT TTHDYHAVSDTALSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS FT EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKGGHLKITFASNA FT LQKCKVPILVPSQMKKSAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNQLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT gene 4346..5050 FT /gene="TGBp1" FT CDS 4346..5050 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="GOA:B8XXN8" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B8XXN8" FT /protein_id="ACJ74172.1" FT /translation="MERSTLINLLQLHHFKPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVSENPAKTFISLTRHTHK FT LTIGELNARSNS" FT gene 5031..5402 FT /gene="TGBp2" FT CDS 5031..5402 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="GOA:Q3BLC2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q3BLC2" FT /protein_id="ACJ74173.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSSTNNTQPLSGHH" FT gene 5254..5508 FT /gene="TGBp3" FT CDS 5254..5508 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B8XXP0" FT /protein_id="ACJ74174.1" FT /translation="MSSYLSSFSHWALSSPINLVLALVVLLTSILAITHIHQPTIHNHC FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT CDS 5547..6260 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B8XXP1" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B8XXP1" FT /protein_id="ACJ74175.1" FT /translation="MTDKTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 6293 BP; 2000 A; 1449 C; 1163 G; 1681 T; 0 other; atgtctcgtg tcagaaatac tttggaaaag atcagagacc cacaagtaca gtccagcatt 60 tgtgaagctg cctatcaaca tgttcgacct gtacttaaag aatctctaat caattgtcct 120 tacgcgctta atgattatga agcagacacc cttgagaatc ttggtgtcac aattaacccc 180 catgcaatcc aaacacacac acatgccgca gccaaagtag tcgaaaatcg tatgcttgaa 240 attgttggac atcacttgcc taaagatgaa aaagtaactt tcatcttcct caaacgtagc 300 aagctgcgtt acatgagaag agctgctgtg cataaagatg tctttgtcaa tcataacatt 360 gaaccaaaag acttcttcag gtatgatgaa gagtctacat caaccagctt ttccgttgat 420 acgagaatcg catacatttc agattctcta cactttatgg aacctgctga tgtgactcac 480 ttgtttgacc gttgccaaaa ccttaaaaca ttgatggcaa ctgttgtact acctgtggaa 540 gctatacaca gacagacatc tctattccct gcgatttact ccattaacta caatgaagaa 600 ggctttgaat atatcccagg atcacacggt ggtggggcat atttccacaa atatgaaacc 660 ctagaatggc tcaaatactc tagattcatt ggacatgatc cattgactgg tttaaaatac 720 accattacga ttcaaatggt ggagagtctt ggtgccaatc accttttcct cttccaaaga 780 ggaaactttg agacgccgct atacaggacg tttcaaaaga atagttttgt gacattccca 840 aatatattcc atccccgaca cgtcaatgcc acaaaaccta tgcctagatc aagggccata 900 cagctgtact tatatgtgaa atcagtaaat aaagttacgc aaagagatat atttgccaag 960 gttagacaac tgatttccac tgctgagcta gaattgtatg accctgatga actcacgcat 1020 gttgtaaatt atttcacata tgtgtcacaa ctgtcatcta tcaatgatta tgacaacatg 1080 ctcaaatcca gtttcttcaa aaaactggtt gcacccatgc aacacgactg gaggtgcatg 1140 attgaattct tccggggaaa gagtgacttc aatcaactgc tcacagctct tcaatggaaa 1200 gatttttcat atactattaa gactgaagag cttgtaatta ctacacacac tgctatagga 1260 caagcaataa gcaatgcagc tgccacatat aaagaaagaa agcagctgac tcaattggtc 1320 aaaaaaggta caatatcctt agcagatttt gaacagagag aacctgaaat aacttacact 1380 gagtttgagc ctgaaactag gccccaagtg gactgcgtta ctaattataa taatgcagtt 1440 aaaaatttag gtctttctga acttgatgaa cagccccaat gttcatcttc taacagtcat 1500 ctaccctgca atgaaatatc cttagcaatg actgatgacg acaatgctgc ggccattcat 1560 gaaattgaat ctctattgtc tgaaccgata atagctcctc aactcccagc attgccacac 1620 aagacatggg ccagttatgc ttcagacact tcatccatga agaaccgtga gattgagaac 1680 ataattgctg agcttgaaat ctcacggaag gaaaataatg tgcaacaaac tactcatgat 1740 taccatgcag tttctgacac agctctgagc tccggagatc tcccatggaa agcatggatt 1800 ccacttctga atgcacacgg cttcaaggga gaccaacttc aatacagtcc ggatggcaaa 1860 gtgattcagc caatccagga catcaacaac aaaacaccaa gatctgagta cccatccagc 1920 attcctgcag atcttgtgaa tacactgaga aacattaaaa gagcagtgta tgccattcct 1980 attagccatc gaagggcaag tgcttacagc tctgatatca aaaacaatag gaccggcaaa 2040 ttactctgtt cccaatcaaa agaatggaag gaaagttttg ctttcaaaat gcaacatgaa 2100 gacatcgtta aatctggagt agtcattcat ggctgtggcg gctctggaaa atcacaagca 2160 ttacaaaact ttctcagaac tcttggcgac tccaatgact gctgcacagt ggttgtgcca 2220 actgttgaac tcagaaatga ttgggtgaac aaattgtgta agctacccat ggaacacatt 2280 aaaacatttg agaaagcaat gattcaacca ggattcccag ttgttatctt tgatgactac 2340 accaagttgc cacctggtta cattgaggcc tatttgttcc accatgccaa cactgaactt 2400 ttcattctta ctggagactc gcggcaaagt gtatatcatg agtccaacaa tgaagcatac 2460 atcgcctcat tagatgaagc cgtcgcttat tatgctaact actgtggatt ttacctaaat 2520 gctacacaca gaaatgttcg cagtttggcc aataagctag gtgtttacag tgagaaagga 2580 ggtcacctta aaattacctt tgcctcaaat gctctacaaa agtgcaaagt gccaattttg 2640 gtgccctctc aaatgaagaa gagtgctatg caagacatag ggcacaaagc catgacctac 2700 gctgggtgtc aagggcttac tgcaccgaga gtccaaattt tgcttgacaa ccacacacaa 2760 cactgctcag acagggtgct gtacacttgt ctctccagag ctgtggattc catccacttt 2820 atcaatacag gcccaaacaa ttctgaattt tgggacaagc ttgaggcaac accatacctc 2880 aaagcattta ttgatactta cagagatgag aaaacagaaa tgctcaattc taagcctgct 2940 gatgacagtc ccgccgagcc tgaagctcca ttgactcact ttccagtgtc aaacggcaat 3000 aacttggaaa agttagcttc ggcgcttcct gaaaaatttg caagagagtt atatgataaa 3060 caccatggat attctaatac aatccaaact gaaaatccag tggtgcaact tttccagcat 3120 caacaagcca aagatgaaac acttttctgg gcgacaatag aagctagact ttctattaca 3180 actcctgaag ccaacttacg agaatttgtg ctaaagaaag atgttggaga tatcttgttt 3240 ttcaattacc acaatgtcat gtgcttacct gccgacccag tggatttcga gccaagaaca 3300 tgggaaatat gtgctgctga agttaaaaat acatacttag ccaaaccaat ggctaacttg 3360 atcaatgctg ctagccgaca atctcctgat ttcgacgcta acaaaatttc cctgttccta 3420 aaatctcaat gggtcaagaa agtagaaaaa ttaggtgctg tcaagtcaaa gcctggccag 3480 accattgcag ctttcatgca acaaacagtg atgttgtatg ggaccatggc tagatacctc 3540 agaaagatga gacaaagatt tcaaccaaaa catattttca tcaattgtga aacaacaact 3600 gataatctga accaatttgt taaacaaggt tggaacttta acagaacagc tcagacaaat 3660 gatttcacag cttttgacca atcacaagat ggtgcaatgc ttcaatttga agtcatgaag 3720 gcaaaattct tcaatatccc tgccgacatc attgaaggat acatcaacat caaattgaac 3780 gccaaaattt tccttggcac attgtccatt atgaggttgt ctggtgaagg tccaactttt 3840 gatgccaaca cagaatgttc aatagcatat actgctacaa gataccatct tgattctaca 3900 gtcaagcagg tttatgctgg agatgatatg gcattagatg gagttgtcca agaaaaaccc 3960 tctttcaaaa aactacagaa ccagcttaaa ctcacctcaa agacactatt tccaaaacag 4020 gttaaaggtg attatgctga attctgtggt tggactttca ctcctggtgg tatcattaaa 4080 aaccctttga aaatgcatgc ttccattatg ttgcaagagg caatcggcaa tttacacact 4140 gctgccagat catatgccat tgacatgaag cattcatacc aaatgggtga tgagctgcac 4200 aattacttaa caccagatga agctgaacaa cacttccttg ctgttcggaa gttgcacaag 4260 ttacaccaag gagaagcaat gagacttggt gaaaagagcc ctccaaaagc aacacattga 4320 ggggttaagt tttccccagt tcgaaatgga aagatcaact ctgattaatt tacttcaatt 4380 gcaccacttc aagccaaaac tcagtgttga aggaatcata gttgtgcacg gaattgcagg 4440 cactgggaaa accactttac ttaggacttt attttctgct taccctagct tagttatagg 4500 ttcacctagg ccttgctatt tagataaaca aaacaaaatt tcacaagttt gcttatcttg 4560 ctttcccaat acccactgtg atatcgtcga tgagtatcat ttgctagaaa gttttccaga 4620 accaaaattg gctatctttg gtgacccctg tcaatgcaca tacattgaga gacttagagt 4680 cccacattac acttccttca gaactcatag atttggaaag tcaactgctg agattttgaa 4740 caaactgttt gaccttaata tagtctcagt taagaaagaa gacgacatcg ttgaattctt 4800 taaccctttt gaagttgacc ccactgagca tatctctgct tctgaagaag aagtcttgga 4860 ctttgtttct gaccaagtgg tgaccactag ctcagaggaa ctagcaggac ttgagtttgc 4920 agaaacaact ttctactgca caacattggc cgcagctgtt tctgaaaatc ctgctaagac 4980 tttcatctct ctgactagac acacccacaa actcaccatt ggggaactaa atgccaggtc 5040 taactcctag agctgacctc actgacacat acaaaatcat tgccattgct ttcttgttgt 5100 cagcttgcat ttacttccaa aatagccact accaacctgt tgctggagac aacttgcacc 5160 gtttgccttt tggtggccaa tatcaagacg gcaccaaaaa gatatcttat tttccacaac 5220 agcagtcata ctttcattct ggaaacaaat taaatgtcct catacttatc ttcattctca 5280 cattgggcat tgtcctcacc aataaattta gttttagctt tagtcgtact actcaccagc 5340 attcttgcta taacacacat tcatcaacca acaatacaca accattgtca ggtcatcatt 5400 gacggtgctg caatagtcat aacaaattgt gagaacacac ctgaagtgct taaagcaatc 5460 aacttctccc cttggaacgg gttaagtttt cctaaatttg aaaattaata ttgagtgttc 5520 acaaaaatca acttcaataa acaatcatga ctgacaaaac acctgttgct gccacttcaa 5580 gtgcaccacc cacagccaaa gatgctggtg ccaaagctcc ttctgacttc tcaaatccca 5640 atacagctcc tagtctcagt gatttgaaga aagtcaagta cgtctccacc gtgacctccg 5700 tggccacacc agctgaaatt gaagccctag gcaaaatctt caccgctatg ggccttgccg 5760 ccaatgagac tggtccggcc atgtgggatc tagctcgtgc atatgctgat gtgcagagtt 5820 ctaaatcggc acagctgatt ggagctaccc cttccaatcc tgcactatca cgccgagccc 5880 ttgctgctca gtttgatcga atcaatataa cccccaggca attttgcatg tactttgcca 5940 aagttgtttg gaacatactt ctcgacagca acattccacc agcaaattgg gccaaacttg 6000 gttaccaaga agatacaaaa tttgctgcat ttgacttctt cgatggagtc accaaccctg 6060 ccagcctgca gcctgctgat ggtctcatca ggcagccaaa tgagaaagaa ctagctgctc 6120 actccgtagc taagtacggc gccttggcta ggcaaaagat ctccacaggt aattatatta 6180 ccacacttgg agaagtcaca cgtggacaca tgggaggagc taacaccatg tacgcgatag 6240 acgcaccccc tgaactttaa acactcgaaa cttaatcaga gtggggtttt cta 6293 //