ID FJ457096; SV 1; linear; genomic RNA; STD; VRL; 6291 BP. XX AC FJ457096; XX DT 29-DEC-2008 (Rel. 98, Created) DT 16-JAN-2010 (Rel. 103, Last updated, Version 2) XX DE Pepino mosaic virus isolate 1906 replicase, triple gene block protein 1 DE (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 DE (TGBp3), and coat protein genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6291 RX DOI; 10.1111/j.1365-3059.2008.02018.x. RX AGRICOLA; IND44204392. RA Hanssen I.M., Paeleman A., Vandewoestijne E., Van Bergen L., Bragard C., RA Lievens B., Vanachter A.C.R.C., Thomma B.P.H.J.; RT "Pepino mosaic virus isolates and differential symptomatology in tomato"; RL Plant Pathol. 58(3):450-460(2009). XX RN [2] RP 1-6291 RA Hanssen I.M., Paeleman A., Vandewoestijne E., Van Bergen L., Bragard C., RA Lievens B., Vanachter A.C.R.C., Thomma B.P.H.J.; RT ; RL Submitted (10-NOV-2008) to the INSDC. RL Scientia Terrae Research Institute, Fortsesteenweg 30a, RL Sint-Katelijne-Waver 2860, Belgium XX DR MD5; 742ea9b74eac46dc7a2778b13ec4aa0c. XX FH Key Location/Qualifiers FH FT source 1..6291 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="1906" FT /mol_type="genomic RNA" FT /country="Belgium" FT /collection_date="Sep-2006" FT /note="genotype: CH2 mild" FT /db_xref="taxon:112229" FT CDS 1..4317 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:B8XXM7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B8XXM7" FT /protein_id="ACJ74161.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD FT WLKYSRFVGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVIATHTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKPKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPVANGNNLEKLASALPEKFAREIYDKHHGHSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL FT TPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 4343..5047 FT /gene="TGBp1" FT CDS 4343..5047 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="GOA:B8XXM8" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B8XXM8" FT /protein_id="ACJ74162.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKVQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 5028..5399 FT /gene="TGBp2" FT CDS 5028..5399 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ACJ74163.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 5251..5499 FT /gene="TGBp3" FT CDS 5251..5499 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ACJ74164.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT CDS 5545..6258 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q2UVL7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2UVL7" FT /protein_id="ACJ74165.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 6291 BP; 1997 A; 1433 C; 1142 G; 1719 T; 0 other; atgtctcgtg ttagaaacac tttagaaaag atcagggacc cacaagtaca atctagcatt 60 tgtgaagccg cttaccaaca tgttagacct gtgctcaagg aatccctaat caactgtcct 120 tatgcgctta atgactatga agcagacacc cttgagaatt taggtgtcac aataaacccc 180 catgcaatcc aaacacatac tcatgcggca gctaaagttg tggaaaatag aatgctcgaa 240 attgttggac accacttgcc caaggacgag aaagttacct tcattttcct caaaagaagc 300 aaactgagat acatgcgaag agctgctgta cataaagatg tttttgttaa tcacaatata 360 gaacccaagg atttcttcag gtatgatgag gaatctacat ctactagttt ctccgtgaac 420 accaggatcg cttacatctc cgattctcta catttcatgg aaccagctga tgtgacccac 480 ctctttgacc gttgccacaa tcttaaaaca ctgatggcaa ctgtcgtttt acctgttgaa 540 gccatccaca aacaaacatc tttatttcca gcgatatact ccattaatta caatgaagaa 600 ggttttgagt atatccctgg ttctcatggt ggaggggcat actttcataa gtatgaaaca 660 ttagactggc tcaaatactc tagatttgtt ggccaggacc ccttaactgg actccgatac 720 accataacca ttcaaatggt agagagttta ggagccaacc atcttttcct cttccaaaga 780 ggaaattttg aaacaccttt atacaggacg tttcaaaaaa atagctttgt gacctttcct 840 aacatcttcc atccccaaca tgttaatgcc acaaagccca tgccaagatc cagggcaatt 900 cagctgtatt tatatgtcaa atctgtcaat aaggtgacac aaagagatat ctttgcgaaa 960 gtaaggcaac ttatatctac agctgaactt gaattgtatg accctgatga acttacacat 1020 attgtcaatt atttcgcata tgtctcagaa ctaagctcaa tcaacgacta tgacaatatg 1080 ctcaaatcaa gttttttcaa aaaacttgtt gcacccatgc aacatgactg gaggtgcatg 1140 attgaattct ttcggggaaa aagtgatttc aatcaacttt taactgctct tcaatggaaa 1200 gacttctctt acaccattaa aactgaagag ttagttattg ctacacacac tgaaattggc 1260 caggcaatct gtaaagctgc gaccacatac aaagaaagaa gacaattgac caatttagtc 1320 aaacaaggcg cagtaacatt agctgatttc aaagaagcgg accagcatgt ggagtacact 1380 cactttgacc ctgagtttaa atccactgtt gacccccacc ggagctatga aaatgccatc 1440 aacaatcttg gcattgagat taatgaggat gtacctgaaa gttccggcac taatgaaaca 1500 ttgcttaaca atgaaatatc tttagcaatg tcatctgccg aacatgtgca agctgttcaa 1560 gaaattgagt ctttactctc taaccccgaa gcggcaccaa tattgccccc tgcacatgtt 1620 aaaacatggg ctagccttgc atctgacact tccagcacta aaaaccgtga aatcgaagat 1680 atagtggcta agctggaaat acaaagaaat gaagctagtt gcagctacct tcaaccaaat 1740 aaggaattgt caaaacccaa ggctgctgat aacaatctcc cctggaatgc ttggatccca 1800 ttgcttaatg cacacggctt caaaggagat caattacaat acggcccaga tggtaacttg 1860 atacagccca tccaagacat taacaattca cagcctagat ctgactatcc gtcttctctg 1920 ccatgtgaac ttgtggaaac tttgaggaaa attaagcgtg ctgtctatgc catcccaata 1980 agccacagga gagctagtgc ttacagttct gacatcaaaa ataacagaac tggcaaactt 2040 ctctgcaacc aaagcaaaga atggaaagaa agctttgctt tcaaaatgca acatgaagac 2100 atcgtcaaat caggtgttgt catacatggt tgcggaggtt ctggcaaatc ccaggcatta 2160 caaaacttct tgagaacatt gggtgattca aatgattgct gtactgttgt agtacccact 2220 gttgaactta gaaatgactg ggtaaacaaa cttcataaat tgcccatgga gcatatcaaa 2280 acatttgaga aagcaatgat tcaacctggc tttccaattg ttatatttga tgattacacc 2340 aagttgccac ctggctacat tgaagcatac ctatttcacc atgccaacac tgagcttttc 2400 atacttactg gtgattctag gcaaagcgtg taccatgaat ctaacaatga agcgtacatt 2460 gcctcattag atgaagctgt tgcatactac gctaattact gcggttttta tttaaatgct 2520 actcatagaa atgtccgtag tttagccaac aaacttggtg tttacagtga gaaagaagga 2580 cacttgaaaa tcacttttgc ttcacatgcc ttacaaaagt gcaaagtgcc aattttagtt 2640 ccttctcaaa tgaaaaagag tgctatgtta gacattggac ataaatccat gacctatgct 2700 ggttgccaag gtttaacagc acccaaggta caaattctcc ttgataacca cacgcaacat 2760 tgctctgaca gagttctgta cacctgtctg tctcgtgcag ttgattccat ccacttcatc 2820 aatactggtc ccaacaattc agaattttgg gataagcttg aagcaacacc atatctcaaa 2880 gccttcattg atgtctatag agatgaaaaa actgaaatgc tcaattctaa gcctgctgat 2940 gacagtccaa ctgagcctga agcacctgtt acacatttcc cagtagcaaa tggaaataac 3000 ttagagaaat tagcttctgc tttgcctgaa aaatttgcta gggagattta tgacaagcat 3060 catggccact ccaacacaat ccaaactgag aaccctgtgg tccaactttt ccaacatcaa 3120 caagcgaaag acgagacact cttttgggct acaattgaag ctagattgtc cataacaact 3180 cctgaagcaa acctcagaga atttttgctt aagaaagatg ttggagacat tctcttcttc 3240 aattaccata atgctatgtg cttgcctgcc gatcctgttg actttgaaga aaagacctgg 3300 gagatctgtg ctgctgaagt gaaaaacact tatcttgcca aacccatggc caatcttatc 3360 aatgcggcaa gtagacaatc acccgacttc gactctaata agatctcatt attcctaaag 3420 tctcaatggg tgaaaaaagt ggaaaaactt ggagctatca aatcaaaacc tggtcagacc 3480 atagctgctt ttatgcaaca aacagtcatg ttgtatggta ctatggccag gtacttaagg 3540 aaaatgcggc aaagattcca gccaaaacac atattcatca attgtgaaac cacaactgat 3600 gatctcaata aatttgtcaa agatggctgg aactttaaca gaaccgccca aacaaatgac 3660 ttcactgctt ttgatcagtc acaagatgga gcaatgcttc aatttgaagt catgaaagca 3720 aaatttttta acattccagc tgatgtcatt gaaggctaca tcaacatcaa gctgaatgct 3780 aaaattttcc ttggaacact ctcaataatg agactttctg gtgaaggtcc cacatttgac 3840 gctaacactg agtgttcaat tgcatacact gccacaagat tccatattga caatactgtt 3900 aagcaagtgt atgccggtga cgacatggca ttagatggag ttgtgagtga aaagaaatca 3960 ttcaggaagt tacaaaatct actaaaactc acttcaaaaa cgctgtaccc aaaacaggtt 4020 aaaggggatt acgctgaatt ttgtggttgg actttcacac cagggggtat aattaaaaat 4080 ccacttaaaa tgcatgcctc aattatgctg caagaagcca ttggcaatct gcacacagca 4140 gccagatctt atgcaattga catgaagcat tcataccaaa tgggtgacca actgcatgac 4200 tacctaaccc ccgatgaagc tgaacaacat ttcctagctg tgagaaagct tcacaaactc 4260 catcaaggcg aggccatgcg tcttggggag aaaagtccac caagatcaac ccattaaggg 4320 gttaagtttt ccccagtttg aaatggaaag atcaactttg atcaatttac ttctgttaca 4380 caaatttgaa cacaagatta acactgaagg aatcattgtt gtgcacggaa ttgctggaac 4440 tgggaaaacc acattgctta ggactttatt ttctgcatac cctagcttag ttataggttc 4500 acctaggcct tgttacttag ataaagctaa taaaatttca caagtttgcc tttcttgttt 4560 tccaaatacc ttgtgtgaca ttgttgacga gtaccatctc ttagaaagtt ttcctgaacc 4620 aaaactagcc atttttggtg acccctgtca gtgcacttac attgaaaggt tgagaacacc 4680 caactacaca tccttcagaa cacaccgatt tggcaaatcc actgctgctc tactaaacaa 4740 gttatttgat cttaacattg agtcagtcaa agtacaagac gacacagtag aatactttga 4800 tcctttcgca gtggacccct ctgaacacat ttctgcttca gaaaaagaag ttttggaatt 4860 tgtaggtgat caagttgaga ctacaagctc tgaagaacta gctggtctcg agtttagtga 4920 agttactttc tactgtacca cacttgctgg tgctgttcaa gaaaatcctg ccaaaacctt 4980 catttcactc actagacaca cttcaaagct cacaattggt gaactaaatg ccaggtctga 5040 ctcctagagc tgatcttact gacacgtata aaatcattgc tatagccttt ctactgtcag 5100 cttgcattta cttccaaaac agtcattatc aaccagttgc aggtgataat ttgcacagac 5160 taccctttgg tggtcagtat caagacggaa ctaagaagat ttcttacttt ccgcagcaac 5220 aatcctactt tcactcagga aacaagctta atgtcctcat acttatcttc attcttacac 5280 tgggtattgt cctcaccaat aaatttagtt ttagcattag ccgtaatact caccagcatc 5340 attgctacaa cacacattct gcaacccaaa caggtcaatc agtgccaggt catcattgac 5400 ggtgcagcca tagttataac aaattgtcca aacacacccg aagttcttaa agcaatcaac 5460 ttctcccctt ggaacgggtt aagttttcct caattgtgaa attatatttg ttatctagtt 5520 aaattcaaac aatttaactc aactatggaa aaccaaccta cagcttctaa cccatcagat 5580 gtaccaccaa ctgctgctca agctggtgcc cagagcccag ccgacttctc aaatcctaat 5640 acagctcctt ccctaagtga tttgaagaag atcaaatacg tgtcaactgt cacttcagtt 5700 gccacgcctg ctgaaattga ggcccttggc aagatcttta ctgccatggg tttagcagcc 5760 aatgagaccg gacctgccat gtgggacctc gctcgtgctt atgctgatgt gcaaagttca 5820 aaatctgcac aacttatagg tgccacacca tccaaccctg ctttgtctag acgtgcactt 5880 gctgcacagt ttgatcgtat caatatcaca cccagacaat tctgcatgta ttttgcaaaa 5940 attgtttgga acatactgtt agacagcaat gtgccacctg ccaactgggc aaaattgggc 6000 tatcaggaag ataccaagtt tgctgctttt gacttctttg atggagtcac aaatccagct 6060 agtctacagc ctgcagatgg cctaatcagg cagcccaatg aaaaagagct tgctgctcac 6120 tcggttgcta aatatggcgc ccttgcccgc cagaaaatat ccactggtaa ctacatcacc 6180 acccttggtg aagttacacg tggtcacatg ggcggcgcca acactatgta cgcaattgat 6240 gcacctcctg aactttaaac actcgaaact taatcagagt ggggttttct a 6291 //