ID FJ457096; SV 1; linear; genomic RNA; STD; VRL; 6291 BP.
XX
AC FJ457096;
XX
DT 29-DEC-2008 (Rel. 98, Created)
DT 16-JAN-2010 (Rel. 103, Last updated, Version 2)
XX
DE Pepino mosaic virus isolate 1906 replicase, triple gene block protein 1
DE (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3
DE (TGBp3), and coat protein genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-6291
RX DOI; 10.1111/j.1365-3059.2008.02018.x.
RX AGRICOLA; IND44204392.
RA Hanssen I.M., Paeleman A., Vandewoestijne E., Van Bergen L., Bragard C.,
RA Lievens B., Vanachter A.C.R.C., Thomma B.P.H.J.;
RT "Pepino mosaic virus isolates and differential symptomatology in tomato";
RL Plant Pathol. 58(3):450-460(2009).
XX
RN [2]
RP 1-6291
RA Hanssen I.M., Paeleman A., Vandewoestijne E., Van Bergen L., Bragard C.,
RA Lievens B., Vanachter A.C.R.C., Thomma B.P.H.J.;
RT ;
RL Submitted (10-NOV-2008) to the INSDC.
RL Scientia Terrae Research Institute, Fortsesteenweg 30a,
RL Sint-Katelijne-Waver 2860, Belgium
XX
DR MD5; 742ea9b74eac46dc7a2778b13ec4aa0c.
XX
FH Key Location/Qualifiers
FH
FT source 1..6291
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="1906"
FT /mol_type="genomic RNA"
FT /country="Belgium"
FT /collection_date="Sep-2006"
FT /note="genotype: CH2 mild"
FT /db_xref="taxon:112229"
FT CDS 1..4317
FT /codon_start=1
FT /product="replicase"
FT /db_xref="GOA:B8XXM7"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR002588"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR027351"
FT /db_xref="InterPro:IPR027417"
FT /db_xref="UniProtKB/TrEMBL:B8XXM7"
FT /protein_id="ACJ74161.1"
FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD
FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD
FT WLKYSRFVGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTEELVIATHTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVE
FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ
FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY
FT LQPNKELSKPKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD
FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF
FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK
FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH
FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL
FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL
FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP
FT VTHFPVANGNNLEKLASALPEKFAREIYDKHHGHSNTIQTENPVVQLFQHQQAKDETLF
FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV
FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ
FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD
FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE
FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD
FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL
FT TPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT gene 4343..5047
FT /gene="TGBp1"
FT CDS 4343..5047
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /db_xref="GOA:B8XXM8"
FT /db_xref="InterPro:IPR027351"
FT /db_xref="InterPro:IPR027417"
FT /db_xref="UniProtKB/TrEMBL:B8XXM8"
FT /protein_id="ACJ74162.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKVQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 5028..5399
FT /gene="TGBp2"
FT CDS 5028..5399
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /db_xref="GOA:Q699Z7"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT /protein_id="ACJ74163.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 5251..5499
FT /gene="TGBp3"
FT CDS 5251..5499
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /db_xref="GOA:Q334E8"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q334E8"
FT /protein_id="ACJ74164.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT CDS 5545..6258
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="GOA:Q2UVL7"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT /protein_id="ACJ74165.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 6291 BP; 1997 A; 1433 C; 1142 G; 1719 T; 0 other;
atgtctcgtg ttagaaacac tttagaaaag atcagggacc cacaagtaca atctagcatt 60
tgtgaagccg cttaccaaca tgttagacct gtgctcaagg aatccctaat caactgtcct 120
tatgcgctta atgactatga agcagacacc cttgagaatt taggtgtcac aataaacccc 180
catgcaatcc aaacacatac tcatgcggca gctaaagttg tggaaaatag aatgctcgaa 240
attgttggac accacttgcc caaggacgag aaagttacct tcattttcct caaaagaagc 300
aaactgagat acatgcgaag agctgctgta cataaagatg tttttgttaa tcacaatata 360
gaacccaagg atttcttcag gtatgatgag gaatctacat ctactagttt ctccgtgaac 420
accaggatcg cttacatctc cgattctcta catttcatgg aaccagctga tgtgacccac 480
ctctttgacc gttgccacaa tcttaaaaca ctgatggcaa ctgtcgtttt acctgttgaa 540
gccatccaca aacaaacatc tttatttcca gcgatatact ccattaatta caatgaagaa 600
ggttttgagt atatccctgg ttctcatggt ggaggggcat actttcataa gtatgaaaca 660
ttagactggc tcaaatactc tagatttgtt ggccaggacc ccttaactgg actccgatac 720
accataacca ttcaaatggt agagagttta ggagccaacc atcttttcct cttccaaaga 780
ggaaattttg aaacaccttt atacaggacg tttcaaaaaa atagctttgt gacctttcct 840
aacatcttcc atccccaaca tgttaatgcc acaaagccca tgccaagatc cagggcaatt 900
cagctgtatt tatatgtcaa atctgtcaat aaggtgacac aaagagatat ctttgcgaaa 960
gtaaggcaac ttatatctac agctgaactt gaattgtatg accctgatga acttacacat 1020
attgtcaatt atttcgcata tgtctcagaa ctaagctcaa tcaacgacta tgacaatatg 1080
ctcaaatcaa gttttttcaa aaaacttgtt gcacccatgc aacatgactg gaggtgcatg 1140
attgaattct ttcggggaaa aagtgatttc aatcaacttt taactgctct tcaatggaaa 1200
gacttctctt acaccattaa aactgaagag ttagttattg ctacacacac tgaaattggc 1260
caggcaatct gtaaagctgc gaccacatac aaagaaagaa gacaattgac caatttagtc 1320
aaacaaggcg cagtaacatt agctgatttc aaagaagcgg accagcatgt ggagtacact 1380
cactttgacc ctgagtttaa atccactgtt gacccccacc ggagctatga aaatgccatc 1440
aacaatcttg gcattgagat taatgaggat gtacctgaaa gttccggcac taatgaaaca 1500
ttgcttaaca atgaaatatc tttagcaatg tcatctgccg aacatgtgca agctgttcaa 1560
gaaattgagt ctttactctc taaccccgaa gcggcaccaa tattgccccc tgcacatgtt 1620
aaaacatggg ctagccttgc atctgacact tccagcacta aaaaccgtga aatcgaagat 1680
atagtggcta agctggaaat acaaagaaat gaagctagtt gcagctacct tcaaccaaat 1740
aaggaattgt caaaacccaa ggctgctgat aacaatctcc cctggaatgc ttggatccca 1800
ttgcttaatg cacacggctt caaaggagat caattacaat acggcccaga tggtaacttg 1860
atacagccca tccaagacat taacaattca cagcctagat ctgactatcc gtcttctctg 1920
ccatgtgaac ttgtggaaac tttgaggaaa attaagcgtg ctgtctatgc catcccaata 1980
agccacagga gagctagtgc ttacagttct gacatcaaaa ataacagaac tggcaaactt 2040
ctctgcaacc aaagcaaaga atggaaagaa agctttgctt tcaaaatgca acatgaagac 2100
atcgtcaaat caggtgttgt catacatggt tgcggaggtt ctggcaaatc ccaggcatta 2160
caaaacttct tgagaacatt gggtgattca aatgattgct gtactgttgt agtacccact 2220
gttgaactta gaaatgactg ggtaaacaaa cttcataaat tgcccatgga gcatatcaaa 2280
acatttgaga aagcaatgat tcaacctggc tttccaattg ttatatttga tgattacacc 2340
aagttgccac ctggctacat tgaagcatac ctatttcacc atgccaacac tgagcttttc 2400
atacttactg gtgattctag gcaaagcgtg taccatgaat ctaacaatga agcgtacatt 2460
gcctcattag atgaagctgt tgcatactac gctaattact gcggttttta tttaaatgct 2520
actcatagaa atgtccgtag tttagccaac aaacttggtg tttacagtga gaaagaagga 2580
cacttgaaaa tcacttttgc ttcacatgcc ttacaaaagt gcaaagtgcc aattttagtt 2640
ccttctcaaa tgaaaaagag tgctatgtta gacattggac ataaatccat gacctatgct 2700
ggttgccaag gtttaacagc acccaaggta caaattctcc ttgataacca cacgcaacat 2760
tgctctgaca gagttctgta cacctgtctg tctcgtgcag ttgattccat ccacttcatc 2820
aatactggtc ccaacaattc agaattttgg gataagcttg aagcaacacc atatctcaaa 2880
gccttcattg atgtctatag agatgaaaaa actgaaatgc tcaattctaa gcctgctgat 2940
gacagtccaa ctgagcctga agcacctgtt acacatttcc cagtagcaaa tggaaataac 3000
ttagagaaat tagcttctgc tttgcctgaa aaatttgcta gggagattta tgacaagcat 3060
catggccact ccaacacaat ccaaactgag aaccctgtgg tccaactttt ccaacatcaa 3120
caagcgaaag acgagacact cttttgggct acaattgaag ctagattgtc cataacaact 3180
cctgaagcaa acctcagaga atttttgctt aagaaagatg ttggagacat tctcttcttc 3240
aattaccata atgctatgtg cttgcctgcc gatcctgttg actttgaaga aaagacctgg 3300
gagatctgtg ctgctgaagt gaaaaacact tatcttgcca aacccatggc caatcttatc 3360
aatgcggcaa gtagacaatc acccgacttc gactctaata agatctcatt attcctaaag 3420
tctcaatggg tgaaaaaagt ggaaaaactt ggagctatca aatcaaaacc tggtcagacc 3480
atagctgctt ttatgcaaca aacagtcatg ttgtatggta ctatggccag gtacttaagg 3540
aaaatgcggc aaagattcca gccaaaacac atattcatca attgtgaaac cacaactgat 3600
gatctcaata aatttgtcaa agatggctgg aactttaaca gaaccgccca aacaaatgac 3660
ttcactgctt ttgatcagtc acaagatgga gcaatgcttc aatttgaagt catgaaagca 3720
aaatttttta acattccagc tgatgtcatt gaaggctaca tcaacatcaa gctgaatgct 3780
aaaattttcc ttggaacact ctcaataatg agactttctg gtgaaggtcc cacatttgac 3840
gctaacactg agtgttcaat tgcatacact gccacaagat tccatattga caatactgtt 3900
aagcaagtgt atgccggtga cgacatggca ttagatggag ttgtgagtga aaagaaatca 3960
ttcaggaagt tacaaaatct actaaaactc acttcaaaaa cgctgtaccc aaaacaggtt 4020
aaaggggatt acgctgaatt ttgtggttgg actttcacac cagggggtat aattaaaaat 4080
ccacttaaaa tgcatgcctc aattatgctg caagaagcca ttggcaatct gcacacagca 4140
gccagatctt atgcaattga catgaagcat tcataccaaa tgggtgacca actgcatgac 4200
tacctaaccc ccgatgaagc tgaacaacat ttcctagctg tgagaaagct tcacaaactc 4260
catcaaggcg aggccatgcg tcttggggag aaaagtccac caagatcaac ccattaaggg 4320
gttaagtttt ccccagtttg aaatggaaag atcaactttg atcaatttac ttctgttaca 4380
caaatttgaa cacaagatta acactgaagg aatcattgtt gtgcacggaa ttgctggaac 4440
tgggaaaacc acattgctta ggactttatt ttctgcatac cctagcttag ttataggttc 4500
acctaggcct tgttacttag ataaagctaa taaaatttca caagtttgcc tttcttgttt 4560
tccaaatacc ttgtgtgaca ttgttgacga gtaccatctc ttagaaagtt ttcctgaacc 4620
aaaactagcc atttttggtg acccctgtca gtgcacttac attgaaaggt tgagaacacc 4680
caactacaca tccttcagaa cacaccgatt tggcaaatcc actgctgctc tactaaacaa 4740
gttatttgat cttaacattg agtcagtcaa agtacaagac gacacagtag aatactttga 4800
tcctttcgca gtggacccct ctgaacacat ttctgcttca gaaaaagaag ttttggaatt 4860
tgtaggtgat caagttgaga ctacaagctc tgaagaacta gctggtctcg agtttagtga 4920
agttactttc tactgtacca cacttgctgg tgctgttcaa gaaaatcctg ccaaaacctt 4980
catttcactc actagacaca cttcaaagct cacaattggt gaactaaatg ccaggtctga 5040
ctcctagagc tgatcttact gacacgtata aaatcattgc tatagccttt ctactgtcag 5100
cttgcattta cttccaaaac agtcattatc aaccagttgc aggtgataat ttgcacagac 5160
taccctttgg tggtcagtat caagacggaa ctaagaagat ttcttacttt ccgcagcaac 5220
aatcctactt tcactcagga aacaagctta atgtcctcat acttatcttc attcttacac 5280
tgggtattgt cctcaccaat aaatttagtt ttagcattag ccgtaatact caccagcatc 5340
attgctacaa cacacattct gcaacccaaa caggtcaatc agtgccaggt catcattgac 5400
ggtgcagcca tagttataac aaattgtcca aacacacccg aagttcttaa agcaatcaac 5460
ttctcccctt ggaacgggtt aagttttcct caattgtgaa attatatttg ttatctagtt 5520
aaattcaaac aatttaactc aactatggaa aaccaaccta cagcttctaa cccatcagat 5580
gtaccaccaa ctgctgctca agctggtgcc cagagcccag ccgacttctc aaatcctaat 5640
acagctcctt ccctaagtga tttgaagaag atcaaatacg tgtcaactgt cacttcagtt 5700
gccacgcctg ctgaaattga ggcccttggc aagatcttta ctgccatggg tttagcagcc 5760
aatgagaccg gacctgccat gtgggacctc gctcgtgctt atgctgatgt gcaaagttca 5820
aaatctgcac aacttatagg tgccacacca tccaaccctg ctttgtctag acgtgcactt 5880
gctgcacagt ttgatcgtat caatatcaca cccagacaat tctgcatgta ttttgcaaaa 5940
attgtttgga acatactgtt agacagcaat gtgccacctg ccaactgggc aaaattgggc 6000
tatcaggaag ataccaagtt tgctgctttt gacttctttg atggagtcac aaatccagct 6060
agtctacagc ctgcagatgg cctaatcagg cagcccaatg aaaaagagct tgctgctcac 6120
tcggttgcta aatatggcgc ccttgcccgc cagaaaatat ccactggtaa ctacatcacc 6180
acccttggtg aagttacacg tggtcacatg ggcggcgcca acactatgta cgcaattgat 6240
gcacctcctg aactttaaac actcgaaact taatcagagt ggggttttct a 6291
//
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