ID FJ457015; SV 1; linear; genomic RNA; STD; VRL; 4009 BP. XX AC FJ457015; XX DT 16-DEC-2008 (Rel. 98, Created) DT 10-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Soybean yellow mottle mosaic virus from South Korea, complete genome. XX KW . XX OS Soybean yellow mottle mosaic virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4009 RX DOI; 10.1007/s00705-009-0480-z. RX PUBMED; 19701603. RA Nam M., Kim S.M., Domier L.L., Koh S., Moon J.K., Choi H.S., Kim H.G., RA Moon J.S., Lee S.H.; RT "Nucleotide sequence and genomic organization of a newly identified member RT of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean"; RL Arch. Virol. 154(10):1679-1684(2009). XX RN [2] RP 1-4009 RA Nam M., Kim S.M., Domier L.L., Kim Y.T., Moon J.K., Choi H.S., Kim H.G., RA Koh S., Moon J.S., Lee S.H.; RT ; RL Submitted (12-NOV-2008) to the INSDC. RL Agricultural Microbiology Division, National Academy of Agricultural RL Science, RDA, Suinro, 150th, Suwon, Gyeonggi-do 441-707, Korea XX DR MD5; 3f1bfca8e61e6bc513ea05219dbdb799. DR EuropePMC; PMC4663711; 26645042. XX FH Key Location/Qualifiers FH FT source 1..4009 FT /organism="Soybean yellow mottle mosaic virus" FT /host="Glycine max (soybean)" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Jul-2008" FT /db_xref="taxon:578361" FT CDS 40..2280 FT /codon_start=1 FT /transl_except=(pos:721..723,aa:OTHER) FT /product="P84 protein" FT /note="replicase protein; ORF1 and ORF2" FT /db_xref="GOA:B7U995" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B7U995" FT /protein_id="ACJ68411.1" FT /translation="MMIQFGTMPPVRIDGPPRAFSMGMALRAVGKFLVNCCSAFGDNWA FT DSITRNRTQHVCALQYFGDLPIECIVKSTGDFAREPANVTREVGNEKRVVNRHAKGYFL FT SEMVASCRLHFNGIPRSTEANLLGVRRYLATYCQEHRLTNQQTLKLVDVATPLVMTANH FT QDVVSMKLMNDPLLNLYRTLHLEAQVVHTPLRQLVARPFSGTAWSQWIDSVRGYRDPRG FT FRLAQXGCLRRVPGFNTKISRGDHPDMLITPRNGCHKVRYMGQVLGMSNGKHFGVHNSS FT LTNLRRGLIERVFYVEGPKGLQPPPKPEPGIFQESLHGFKRKLMHVVGTHSRIGHDEFV FT SLYHGRRRTIYQQAVDSLSVRSVERKDAYLSTFIKAEKIPLWKKPDPAPRVIQPRNPRY FT NVEVGCYLRKFEHHLYRGINSIMGGPTVIKGYDVDQIGNIMEEAWNKFSDPVAIGFDMS FT RFDQHVSEDALRFEHSVYLQHFNQDPNLAKLLSWQIDNKGYANLAEGKVRYKRRGCRMS FT GDMNTALGNCLLACAITWKLMSGLKFRLLNNGDDCVVITDKSNERAVCERLKHFTRYGF FT TCIAEKPVYELEHLEFCNLQPLNLGSHYTAVRKPTVSLSKDTFCVSGWNNDIDAANWLN FT AIGQCGLALSAGVPVLQSYYSALIRNFPNGKWLSKNCGKLDSGFYRLALHTMGRKPVQV FT SEVARFSFYVMTGVTPDAQVAVEKLYDNLIINRSFEPEGNAKPELDNLSSLI" FT CDS 2280..2486 FT /codon_start=1 FT /product="P7 protein" FT /note="ORF3" FT /db_xref="GOA:B7U996" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:B7U996" FT /protein_id="ACJ68413.1" FT /translation="MDKSPQRGRSRSRSRQTQGPKGPKPENKQIQVAHHAVDKARGKPP FT GGDHGGDFVIVAHTVTVNINFNI" FT CDS 2383..2667 FT /codon_start=1 FT /product="P10 protein" FT /note="ORF4" FT /db_xref="GOA:B7U997" FT /db_xref="UniProtKB/TrEMBL:B7U997" FT /protein_id="ACJ68415.1" FT /translation="MPSTRHEVNHLAVITGVILLLWHIRSQSILILIFDAIAPRVTNIT FT SAILLAIFYCYSNSTASIPYISQPVTHSSTSKIVYIAVGTNPVAVSKHE" FT CDS 2664..3728 FT /codon_start=1 FT /product="P38 protein" FT /note="ORF5; coat protein" FT /db_xref="GOA:B7U998" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B7U998" FT /protein_id="ACJ68412.1" FT /translation="MNGKMLTIAQLAKKEKTEGRRALSKNQRKRLDSADTRPLKEVSST FT ARVSTRRVPAAISSNVSNGVPNYAVRQNKPVIQHTELWGTLMSNSTESPAYIARTLNPS FT DPATFNWVQPLSTGYDMYRLINCEIIYTPRCATTTTGSIVLAHDPDASDANPDNVTDLL FT NMAGAVSGSVFSPLRIKPNIKQLDRYVRDNSTSDPKLVDAGKILVAAYGQQASTTPFAL FT GEVRFSYTLQLLNPQPHSTMVQRLGAAPPPGVGPTYATLRTVNGATTSSNVLTFSTAGA FT YLITAVDATAGLGTPVTTDFGRFRVQGTSAADSPLLMFGTALKSGATITFNGPVSNVLD FT VYVVRDSGVSDNSS" FT CDS 2668..3339 FT /codon_start=1 FT /product="unknown" FT /note="ORF6" FT /db_xref="GOA:B7U999" FT /db_xref="UniProtKB/TrEMBL:B7U999" FT /protein_id="ACJ68414.1" FT /translation="MEKCSPLPNSPRRRKQRDEELSPRTSESDSTPLTLDPSRKSAAPL FT ECQHEESPLPSRPMCPMEYRTTLFDKTNRSFSILSYGELLCLIALSPLLISLGHSTQVI FT LQHSIGCNRSPQGMICTDSLIVRSSTLPGVRLPLRDRLSWRMIQTLVMLTLIMSLTCLT FT WLALSLARSSLPSGSSQTLNSSTVMFVTILLATPSWLMLARYWLQHMDSKLQQPPSPSA FT K" XX SQ Sequence 4009 BP; 1045 A; 1005 C; 1006 G; 953 T; 0 other; gggtaaccca gccagttatc caccatttaa tctttcagga tgatgatcca attcggaaca 60 atgccacctg tcagaattga tggacctcca cgagcttttt cgatggggat ggctctcaga 120 gcggttggga aattcttagt caactgttgc tctgctttcg gcgataactg ggccgacagt 180 atcaccagga accggactca acacgtctgc gcactccaat attttgggga cctccccatt 240 gagtgcatag tgaagagcac cggggacttt gcaagggaac cagccaatgt caccagggaa 300 gtcgggaatg agaagcgtgt tgtcaatagg cacgccaaag ggtacttcct aagtgagatg 360 gtggcgagtt gccggttaca cttcaacggc attcctcgct ccactgaggc caacctccta 420 ggagttaggc gctacctggc aacatattgc caggagcata ggttgaccaa ccagcagaca 480 ttgaagttgg tcgatgttgc cacccccctt gtaatgactg ccaatcatca ggatgtggtt 540 tccatgaagt tgatgaatga cccgttactt aacttgtatc ggacactaca tttggaagcc 600 caggtggtgc acaccccatt acggcaactc gtcgcccgtc ccttctctgg gaccgcttgg 660 agccagtgga tcgactccgt taggggttat agggacccga gagggttccg gctcgctcaa 720 taggggtgcc taaggcgtgt gccagggttt aatactaaaa taagtcgtgg cgaccaccct 780 gacatgctaa tcacgcctag gaacggatgc cacaaggtaa ggtacatggg tcaggttttg 840 gggatgtcca acgggaagca ctttggagta cacaactcca gtctaaccaa tcttcggaga 900 ggtttgatcg agagggtgtt ctacgttgaa ggacccaaag ggctacagcc cccacccaaa 960 ccagaacccg gtatcttcca agagtcttta cacggtttca aacgcaagtt gatgcatgtg 1020 gttggtactc attccaggat cggacatgac gaatttgtgt ccttgtatca tggcaggagg 1080 aggaccatat accaacaggc ggttgattcc ctttctgtga gatctgtaga gaggaaggat 1140 gcttatttga gtactttcat caaagcagag aagatcccgc tttggaagaa gccagaccca 1200 gctccccgag taatccagcc gcgaaatcca agatacaacg tggaagtggg gtgctatttg 1260 agaaagtttg aacaccactt gtacagaggg ataaactcaa tcatgggtgg acccactgta 1320 atcaagggct atgatgtgga tcagatcggt aacataatgg aagaagcgtg gaacaaattc 1380 tcagacccgg ttgcaatcgg gtttgacatg agtcggtttg accagcatgt ttccgaggat 1440 gctttgcggt ttgaacatag tgtgtatttg cagcatttca accaagaccc taatttagca 1500 aagctgctgt catggcagat tgataacaaa ggatacgcca atctggctga agggaaagtg 1560 aggtacaaac gaagaggatg cagaatgagt ggtgacatga acaccgcctt gggcaattgt 1620 ctattggcat gtgccatcac gtggaaactc atgtctgggc tgaagttccg gttattaaac 1680 aacggtgacg attgtgttgt tataacagat aaatcgaatg agagagccgt ttgtgagaga 1740 ctgaagcact tcacccgata tggattcacg tgcatcgccg aaaagcctgt atacgaacta 1800 gagcatctcg agttctgcaa cctccaacct ttaaaccttg ggagtcacta cacagcagtg 1860 cgtaagccta cagtcagtct atcaaaggac accttctgcg tgtcaggatg gaataacgac 1920 attgatgcag caaactggtt gaatgctatt ggacagtgtg ggctcgcatt gtcagctggg 1980 gtgccagtgt tacagagcta ctattccgca ttgatccgga acttcccaaa tggtaaatgg 2040 ctttctaaga actgtgggaa attggatagt gggttttacc gcctagcgtt acatacgatg 2100 ggccggaagc cggttcaggt tagtgaggtt gctaggttct ccttctatgt gatgactggg 2160 gtcacccctg acgcccaagt ggctgtggag aaactgtatg acaacctgat tataaatcgt 2220 tcattcgaac cggagggaaa cgccaagccc gaacttgaca atttatcttc tctcatataa 2280 tggacaaatc tccccaaagg ggacgtagta gaagcaggag ccggcaaaca caagggccaa 2340 agggacctaa gccagagaac aagcagattc aagttgccca ccatgccgtc gacaaggcac 2400 gaggtaaacc acctggcggt gatcacgggg gtgattttgt tattgtggca catacggtca 2460 cagtcaatat taattttaat atttgacgca atcgccccta gggtaacaaa cataacatct 2520 gccattcttc tagccatttt ctattgctat tccaactcta ctgcaagcat tccttacatt 2580 tctcagccag taacacactc tagtacgtct aagatagttt atatagccgt tgggacaaat 2640 cctgtcgcag tcagtaagca cgaatgaatg gaaaaatgct caccattgcc caactcgcca 2700 agaaggagaa aacagaggga cgaagagctc tctccaagaa ccagcgaaag cgactcgact 2760 ccgctgacac tcgacccctc aaggaagtca gcagcaccgc tagagtgtca acacgaagag 2820 tccccgctgc catctcgtcc aatgtgtcca atggagtacc gaactacgct gttcgacaaa 2880 acaaaccggt cattcagcat actgagctat ggggaactct tatgtctaat agcactgagt 2940 cccctgctta tatcgctcgg acactcaacc caagtgatcc tgcaacattc aattgggtgc 3000 aaccgctctc cacagggtat gatatgtaca gactcattaa ttgtgagatc atctacactc 3060 ccaggtgtgc gactaccact acgggatcga ttgtcttggc gcatgatcca gacgctagtg 3120 atgctaaccc tgataatgtc actgacctgc ttaacatggc tggcgctgtc tctggctcgg 3180 tcttctctcc cctcaggatc aagccaaaca ttaaacagct cgaccgttat gttcgtgaca 3240 attctactag cgaccccaag ctggttgatg ctggcaagat attggttgca gcatatggac 3300 agcaagcttc aacaaccccc ttcgccctcg gcgaagtgag gttttcatac acgctccagc 3360 tgctcaaccc tcagccacat tcaactatgg tgcaacgact cggggctgcc ccaccccctg 3420 gggtgggccc cacttacgca accttgcgta cagttaatgg tgccaccaca tccagcaatg 3480 ttctcacatt ttcgactgct ggcgcctacc tcatcactgc cgttgacgca acagctgggc 3540 tcggaacccc ggtcaccact gattttggcc ggttccgcgt acagggcact agtgctgcgg 3600 actccccact actgatgttt ggaacagccc tcaagagtgg ggctaccatt accttcaatg 3660 ggcctgtctc caacgttttg gatgtttatg ttgtgcgcga tagcggagtt agcgacaact 3720 ctagctagag cttgtaaatt tacatctcat tgaaaacccc tcacacaatc cctctacctc 3780 gatggggcca gcgtctgtca ctgggcagca tggcgaaccg acgttctagg gtaaggttgg 3840 cacctgtgtg tttgggaccc aaaaatagag tgaaattagt gtgtgtctcc cacattcgtg 3900 ggcggttgca agagccgacg taacgtatct agccagaaat ccttcgggtg gggtggttag 3960 aaacagcaaa tcttgacctg ataggccccg ggcatgcggg gcccccccc 4009 //