Dbfetch
ID FJ444852; SV 2; linear; genomic RNA; STD; VRL; 7148 BP. XX AC FJ444852; XX DT 02-JUN-2009 (Rel. 101, Created) DT 11-AUG-2010 (Rel. 105, Last updated, Version 3) XX DE Olive latent virus 3 isolate CN1/1, complete genome. XX KW . XX OS Olive latent virus 3 OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-7148 RX DOI; 10.1016/j.virusres.2010.05.010. RX PUBMED; 20561953. RA Alabdullah A., Minafra A., Elbeaino T., Saponari M., Savino V., RA Martelli G.P.; RT "Complete nucleotide sequence and genome organization of Olive latent virus RT 3, a new putative member of the family Tymoviridae"; RL Virus Res. 152(1-2):10-18(2010). XX RN [2] RP 1-7148 RA Alabdullah A., Minafra A.; RT ; RL Submitted (06-NOV-2008) to the INSDC. RL Dipartimento Protezione delle Piante e Microbiologia Applicata, Universita RL degli Studi di Bari, Via Amendola 165/A, Bari, Bari 70126, Italy XX RN [3] RC Sequence update by submitter RP 1-7148 RA Alabdullah A., Minafra A.; RT ; RL Submitted (23-FEB-2010) to the INSDC. RL Dipartimento Protezione delle Piante e Microbiologia Applicata, Universita RL degli Studi di Bari, Via Amendola 165/A, Bari, Bari 70126, Italy XX DR MD5; 27355b3b430276bc86486be1837d5aed. XX CC On Feb 23, 2010 this sequence version replaced gi:225590489. XX FH Key Location/Qualifiers FH FT source 1..7148 FT /organism="Olive latent virus 3" FT /isolate="CN1/1" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="03-Apr-2008" FT /db_xref="taxon:626962" FT misc_feature 1..185 FT /note="5' non-translated region" FT gene 186..6188 FT /gene="REP" FT /note="OLV-3gp1" FT CDS 186..6188 FT /codon_start=1 FT /gene="REP" FT /product="replicase-associated polyprotein" FT /note="putative 212 kDa polyprotein possessing sequences FT similar to methyltransferase, papain-like protease, FT helicase, and RNA dependent RNA polymerase motifs present FT in nonstructural proteins of other positive single strand FT RNA viruses" FT /db_xref="GOA:C5HGJ1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:C5HGJ1" FT /protein_id="ACN94861.2" FT /translation="MAASWTSFSSLLSNPLSLAQRILTPPHNPSIPSLPKSGFRSVTSL FT SDPSDALTRAQMFSPTKAILSPAASPTPASQPDPPAEPCSDPPTETTVPSSKRALLDSH FT SPSPVIPVDETAPISPPIRLTGSGLKDLVDFLNPTVHRDTIAAPLLETISQPLRDSLRT FT YPWSVPPSLQTHLQSLGINAHNFGYKPHPHPAHKVIETHLLHEHWRHLATQPSAILFMK FT PSKFQKLHNQNDNFTELHNYRLTSKDSTRYPETSRSIPNLPSIFLHDALMYFTPSQILD FT LFERSPALEKCFASLVCPPESNFTDISFYPELYRFRAVGDSITYELEGNPASSYTQPKS FT AIEWLKITTIKGPNFSLSITILESWGPCHSLLIQRGLLPLHQEHSTQAFKTPEAILLPA FT PSHLQQDLRHRLVPTRVYESIFVYVRAVRTLRVTDPSGYVRTQSSKPEYSWVTTAAWDN FT LANFALLTCAHRPRARYYLYWSTLDRLMGWIRAHKLALLTASTPLASLGLASSALLACR FT PFWMRLDSLQLLNRWVIKPSFPRNLPFLLPKAFQPKASLFKAEFLPRHAPSRILPEFFD FT ALLKKAPFLRPLFSDAPIPSWAWALCATGVAIPIIALSIRRFLGPNSPQALLDEYQSYF FT HPKPWQLILEQGPIFANPEPFSPHCQPIPSSGPDSAPSSTLGTPPMYPSSPPAPVEEKT FT ILVPTVRALPPAPPPSSVPPPSKPSPAAPAPVTPPSLPTPVIPPLSTPTPETRVPEVGK FT SGIVASDLPPTEISPNPTLARCRPNFLGLCAPHPNSNPSHPEPSAPSPLITDPSGSLTA FT INPTLEPFEFNHALLGADPSGQGPVAQFNELFPSTLWLQGTGEFLTRSRVQAPSSAPYP FT AMDCLLHAIHTATRIPKPTLWAGLCSNLPDSFLDPQLIAKHGLSTDHFAVLARLFSLRC FT TFQSRSGTQTMGVADATHTFRIRHTPPTEDAPGHFEYMEEIPESLTGAFAQDLAHFALS FT FRFNGYLLPFKHVHTYTSNVSRAKNLISNMKNGFDGVMASADPLHPGQTRERFLSMDNQ FT LDIAVPRETRLIHISGFAGCGKTYPITQLLKKPVFRQFRVAVPTTELRSEWKDLLTLEP FT ADRWRIGTWESSLLKSSRVLVIDEVYKMPRGYLDLRPTPLIRPIQFVIIPWRSPSQGEY FT NSTHPHSSNLRITSEIIHLQPYIDFYCFWSYRIPKNVAACLKVPTTSNKTGFIRRLNSI FT PNANKVLTCSQSSMKTLNQCGFSSVTIASSQGSTLQEAACIHLDRNSRNLSNSHSLVAI FT TRSKSGIIFTGDFHLLDGTTSSNYLFSCLAQGKSVDLEMLFPKTFPPCPRLLQPIRSRR FT TILVGSSEDWAQFYRPTPLEDFSRFQATPVPETAIPCPNGYQGSPEMIEGPSHANLPFE FT ADLDSIDPLEGETSPYSLGFGVHARTARTTNPEATGDIITQSEIVLGDGELNMPQVSTH FT FLPETRRPLHFDNPSALPSSTVPSPVDLSRTAFEPVYPGETFENIAGHFMGPRDPEVLE FT IIHNDQMSNQFPLLDQPFSLAAQPSSLMAAIHNSQNDPTLLPASIGKRLRFRPSNAPYP FT ITAEDQILGSLLFEALCRAYRRHPEAVVPFNPIAFAECINLNEYAQLTSKTQAVIISNA FT RRSDPDWRYSAVRIFSKTQHKVNDGSFFGSWKACQTLALMHDAVILLLGPVKKYQRLFD FT SEDRPSHIYIHAGHTPQDMSNWCQQNLTDSIHLTNDYTSFDQSQHGEAVVLEQMKMARL FT SIPQHLIDLHTHLKCNVSTQFGPLTCMRLTGEPGTYDDNSDYNLAVIHLQYAVGSTPCM FT VSGDDSLLDSKPPIRDEWTGIAPLLALRFKTELDRYSLFCGYFVGSSGAVRCPRALFAK FT IMIAVDDGSIPLKIASYLTEFSIGHSLGDEFWQLLPVEQVVFQSACFDFFCRNCPPAAK FT LLLRLGEAPQSILEATFGKLKWASNAVYSMLSATARHLLIKSRLTRPPPESVEVSQLQG FT QLLASFQH" FT gene 988..2214 FT /gene="MP" FT /note="OLV-3gp2" FT CDS 988..2214 FT /codon_start=1 FT /gene="MP" FT /product="putative movement protein" FT /note="43 kDa protein" FT /db_xref="UniProtKB/TrEMBL:C5HGJ2" FT /protein_id="ACN94862.1" FT /translation="MTPSCISPPPRSSTFSNVLLPWRSVSLRSCVPRNQISPTSHSTQN FT SIASGPSATPSLTNSKGIQPPLIPNLNPLLSGLRSPPSKAQISHSPSPSWSRGARAIHF FT SSKEGSFHSTRNTPPKPSRPPRLSSSQPPLTSNRISDTAWSQPEFTNLSSFTSEQFGRC FT ELLTLQAMSAPNHPNPSIRGSPRLLGIILPTLHFSPAPIDLEPDTTCTGAPLTASWAGF FT ELTSSPFSRPRPPLPPLVSPPALFSLAGLFGCVLTLSNSLTDGSSNPHFRATFHSSCPR FT LSNPRLLSSKPNFFPAMPHPASSPNSSTPSSRKPPSCDLSSQMLQFPPGLGPSVLPALP FT YQSSPCPSDDSWDPTHLKPSLTSTSLTSTPSLGNSSWSRGPSSPILSLSPPIVNPFHRP FT AQTPPLLPP" FT gene 6195..7001 FT /gene="CP" FT /note="OLV-3gp3" FT CDS 6195..7001 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:C5HGJ3" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C5HGJ3" FT /protein_id="ACN94863.1" FT /translation="MFSRASKKSKSPSQSYQPRQPATPTSVLSPPSSPPLSPSTFAPPP FT EPPPPPPPPPPPPPSVQGIPLHFMANTTPPPSGPAPPRDDRVDHQPSLPLAPQIQETTS FT SVPHVDIPFQWLSASLTGEKDVQQTVSLSASQTLSKLWALYRHAELRSVEAEFVPTASS FT FSKPISISCAWTIASITPASGDETDYFGGRFLTIGGPVLLSSTTHIPCDLRSINPTLRS FT SVEFRDTPRVTFTARAVAGATANTPLAHFIIRGVLRLSGPSGAKFA" FT gene 6568..7023 FT /gene="p16" FT /note="OLV-3gp4" FT CDS 6568..7023 FT /codon_start=1 FT /gene="p16" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:C5HGJ4" FT /protein_id="ACN94864.1" FT /translation="MSSRPCLFQPLRLSPNSGPFTGTLNCVRSRLSLSPQPHPSQSPSP FT SLALGQSPQSLPPPAMRLTTSVVDFSPSAARSSSLPPPTFHVTSVPSTLPSAPAWSSAT FT PLASLSPLARSPAPPPTPPWRTSSSEEFFDSLVHPAPSLLDLQNQDR" FT misc_feature 7024..7148 FT /note="3' non-translated region" XX SQ Sequence 7148 BP; 1475 A; 2775 C; 1242 G; 1656 T; 0 other; gcatacaaat acaaatctct ctgacctcac cagtttcgag agaattattt gttctacgga 60 ttccgcttcg gcacgaatcc accaattttc cttttgcttt tctgttcctt tagcgccttg 120 acggcagctc taaaccgcca acttcaagct ccaattcccc gctcactcaa tctccatctt 180 gcgacatggc cgcttcatgg acttccttct cctctctcct ctccaaccct ctctccctcg 240 cccagagaat cctcaccccc cctcacaatc cttccattcc ctcccttccc aaatctggat 300 tccgatccgt cacctctctc tccgatccct ctgatgctct cacccgagct cagatgttct 360 ccccaaccaa agccattctg tctcctgccg cttccccaac cccagctagc caacccgatc 420 cacccgccga accgtgctct gatcccccca ctgaaacgac tgtcccatcc tcaaaacgtg 480 ctctcttgga ctcccattct ccgtcccccg ttatacctgt ggatgaaaca gcccctatca 540 gccctcccat cagactcacc ggttctggtc tcaaagatct cgttgacttc ctgaacccca 600 ccgttcatcg agacacaatt gccgcccctc tcctcgaaac catatctcaa cccctccgag 660 actccctccg aacttacccc tggtccgtgc ccccctcact ccaaacacac ctccaatccc 720 tcgggattaa cgcccataac ttcggataca aacctcaccc tcaccccgcc cacaaggtta 780 tcgagaccca tctcctacat gagcattggc gccacctcgc cactcagcct tctgctatac 840 tatttatgaa accctccaaa ttccagaagc tccacaacca aaatgacaac ttcaccgaac 900 tgcacaatta cagattgacc tctaaggact ccacccggta tccggagacc tccaggtcca 960 tcccaaacct ccccagcatc ttccttcatg acgccctcat gtatttcacc ccctcccaga 1020 tcctcgacct tttcgaacgt tctcctgcct tggagaagtg tttcgcttcg ctcgtgtgtc 1080 ccccggaatc aaatttcacc gacatctcat tctacccaga actctatcgc ttccgggccg 1140 tcggcgactc catcacttac gaactcgaag ggaatccagc ctcctcttat acccaaccta 1200 aatccgctat tgagtggctt aagatcacca ccatcaaagg cccaaatttc tcactctcca 1260 tcaccatcct ggagtcgtgg ggcccgtgcc attcacttct catccaaaga gggctccttc 1320 cactccacca ggaacactcc acccaagcct tcaagacccc cgaggctatc ctcctcccag 1380 ccccctctca cctccaacag gatctcagac accgcctggt cccaacccga gtttacgaat 1440 ctatcttcgt ttacgtccga gcagttcgga cgttgcgagt tactgaccct tcaggctatg 1500 tccgcaccca atcatccaaa cccgagtatt cgtgggtcac cacggctgct tgggataatc 1560 ttgccaactt tgcacttctc acctgcgccc atcgacctcg agcccgatac tacctgtact 1620 ggagcaccct tgaccgcctc atgggctgga ttcgagctca caagctcgcc cttctcacgg 1680 cctcgacccc ccttgcctcc cttggtctcg cctccagcgc tcttctcgct tgcaggcctt 1740 tttggatgcg tcttgactct ctccaactcc ttaacagatg ggtcatcaaa ccctcatttc 1800 cgcgcaacct tccattcctc ttgcccaagg ctttccaacc caaggcttct ctcttcaaag 1860 ccgaatttct tccccgccat gccccatccc gcatcctccc cgaattcttc gacgccctcc 1920 tcaagaaagc ccccttcctg cgacctctct tctcagatgc tccaattccc tcctgggctt 1980 gggccctctg tgctaccggc gttgccatac caatcatcgc cctgtccatc cgacgattct 2040 tgggacccaa ctcacctcaa gccctccttg acgagtacca gtcttacttc caccccaagc 2100 cttggcaact catcttggag caggggccca tcttcgccaa tcctgagcct ttctcccccc 2160 attgtcaacc cattccatcg tccggcccag actccgcccc ttcttccacc ctagggacac 2220 caccaatgta ccccagctca cccccagccc cagtcgaaga gaaaaccatc ctagtcccaa 2280 cggtccgcgc cctcccccca gctccgcctc catcctcagt cccacctccc tccaagccat 2340 ctcccgccgc cccagctccg gtcaccccac ccagcctccc gaccccagtc atccccccac 2400 tctctacgcc caccccagaa actcgcgtgc ctgaggttgg taagtccggc attgttgcct 2460 cagacctccc accaacagag atttccccaa accccactct tgcccgatgt cgtcccaact 2520 tccttggact ctgtgccccc caccccaact cgaaccccag tcatcctgag ccctccgccc 2580 catccccctt gatcaccgac ccttccggat ccctcactgc catcaaccca acccttgaac 2640 cgttcgaatt caatcacgcc ctccttggcg ccgacccttc aggccaaggc cccgtggctc 2700 aattcaacga gttgtttcca tccaccctct ggctccaagg caccggtgag ttcctcaccc 2760 gatcccgcgt acaggccccc tcctcagcac cttaccccgc tatggactgt ctcctgcacg 2820 cgatccacac agccacccga attcccaaac cgaccctgtg ggccggattg tgctccaatc 2880 tacctgattc cttcctcgac ccccaactca tagctaaaca tggtttatcc acggaccact 2940 tcgccgtgct agctcgccta ttctcccttc gctgcacctt ccaatcccgc tctggaaccc 3000 aaaccatggg cgtggctgat gccactcaca ccttccgcat ccgccacact ccacccaccg 3060 aggacgcccc tggtcacttt gagtacatgg aggagatccc tgaatcactg actggcgcct 3120 tcgcacaaga tctcgcccat ttcgccctct ctttccgctt taacggttac ctcctcccct 3180 tcaagcatgt acacacctac acttctaacg tctcccgcgc caaaaatctc atttcgaaca 3240 tgaaaaacgg attcgatgga gttatggcct ccgccgaccc tctccatcct ggccagaccc 3300 gcgaaaggtt cctctcgatg gacaaccaac tcgacatcgc cgtcccacgc gaaacgagat 3360 tgatccacat cagcggcttc gccggctgcg ggaaaaccta tcccatcacc caactcctca 3420 agaaaccggt cttcagacag ttccgagttg cagtgcccac caccgagttg agatcagaat 3480 ggaaggacct tctcaccctt gaacccgctg atcgctggag gatcggcaca tgggaatcct 3540 cccttctcaa gagcagccga gtcttggtca tcgatgaggt ttacaaaatg cctcgcggtt 3600 atcttgatct ccgccctaca cctctgattc gtcccatcca atttgtcatc atcccttggc 3660 gatccccctc ccaaggtgag tataactcca cccaccccca ttcatcaaac ctccgaatca 3720 catcagaaat catccacctc caaccttaca ttgacttcta ttgcttttgg tcctacagaa 3780 tcccgaagaa tgtggctgcg tgcctcaagg taccaaccac gtccaacaag actggcttca 3840 tccgccgcct caattccatc ccgaacgcca acaaggtcct cacctgctcc caaagttcta 3900 tgaaaacttt gaaccaatgt ggtttctcca gcgttaccat agcctcctct cagggctcta 3960 ccctccagga agcggcttgc atccatcttg atcgcaactc ccgcaatctc tccaattccc 4020 attccctcgt ggcgatcacc cgcagcaaat ccggcatcat cttcacaggc gacttccacc 4080 ttctcgacgg caccacttcc tccaactacc ttttctcatg cttggctcag ggcaagtctg 4140 ttgaccttga gatgcttttc ccgaagactt tccctccctg ccctcgtctc ctccagccca 4200 tccgatcccg acgaacaatc cttgtcggct cctcagagga ctgggcccag ttctaccgcc 4260 caactcctct cgaagatttc tccagattcc aagccacccc tgtacccgaa acagctattc 4320 cctgccccaa cggctatcag ggttcgcccg agatgatcga aggcccctca cacgccaacc 4380 tccccttcga agctgacctt gactccatcg acccattgga aggcgagacc tcaccctact 4440 ccctaggttt cggcgtacac gccagaactg ctcgcaccac caacccagaa gccactggcg 4500 acatcatcac ccaatcagag atcgtcctcg gagacggtga gctgaatatg ccacaggtct 4560 caacccactt cctccctgaa acccgccgtc ctctccactt tgacaatccc tccgcgctgc 4620 cctcctccac cgtcccctcc ccggtcgatc tcagtcgcac tgcattcgaa cccgtttacc 4680 caggcgaaac tttcgagaac attgccggtc acttcatggg accccgtgac cccgaagttc 4740 ttgagatcat ccacaacgac caaatgtcca atcagttccc tctccttgac cagcctttct 4800 cattggccgc ccaaccttca tctctcatgg ctgccatcca caactcccag aacgatccca 4860 ccctactccc agcatccatt ggcaaaaggc tgagattccg accctccaac gctccttacc 4920 ccatcaccgc cgaggatcag atcctcggct ccctcctgtt cgaagccctt tgtcgcgctt 4980 accggcgaca cccagaagcc gtcgtgccct tcaaccctat cgcattcgcc gagtgcataa 5040 atctgaatga gtatgcccag ttgacctcca aaactcaagc cgtcatcatc tcaaatgccc 5100 gccgatctga tcccgattgg cgctactctg cagtgcggat cttctccaag acccaacata 5160 aggtcaatga cggctccttt tttggttcct ggaaagcctg tcaaaccctg gccttgatgc 5220 acgacgcagt cattctcctc ctcggaccag tcaagaagta ccagcgtctc ttcgactctg 5280 aagaccgacc ttctcacatc tatatccatg ccggacacac ccctcaagac atgagcaact 5340 ggtgtcaaca gaacctcaca gattccattc acctcacaaa cgactacacc tccttcgacc 5400 aatcccaaca cggcgaggcc gtcgttcttg agcagatgaa gatggcacga ctttccatcc 5460 ctcaacacct cattgatctc cacacccacc ttaagtgcaa cgtctccact cagtttggcc 5520 ctctcacctg catgcgactc accggcgaac caggcaccta cgacgacaac tccgactaca 5580 acctggccgt gattcatctg caatacgccg tcggttccac cccctgcatg gtttctggcg 5640 acgattccct cctagactcc aaacctccaa tccgcgatga gtggaccgga attgcccctc 5700 tcctcgctct ccgcttcaag actgagttgg atcgttactc cctgttttgc ggctacttcg 5760 tcggctcttc cggcgctgtt cgctgccctc gagccctttt cgcaaagatc atgatcgccg 5820 tcgatgatgg ttccattccc ctcaagatcg catcctacct cacggaattc agcattgggc 5880 actcgctcgg cgatgaattc tggcagctcc tccccgttga gcaagttgtc ttccaaagcg 5940 cttgcttcga cttcttctgc cgcaattgtc caccagccgc caagctcctc ctccgcctcg 6000 gtgaagcgcc ccaatcaatc ctagaagcaa cttttggtaa gctcaaatgg gcctccaacg 6060 cggtttactc catgctctca gccactgccc gacacctcct catcaaatcc cggctcaccc 6120 gacccccccc agaaagcgtc gaggtctccc agctacaagg tcaattgctt gcctcttttc 6180 aacattgagc atgcatgttt tctagagctt ccaagaaatc caagtcgccc tctcagagtt 6240 accagcctcg gcagccagcc accccgacct ctgttctctc tcctccctcc tctccccctc 6300 tgtccccaag cacattcgct ccccctcccg agccacctcc acctccgccc cccccccctc 6360 cacctccccc ctccgtccaa ggcattcctc tccacttcat ggccaatacc acgcctcccc 6420 cttccggtcc tgctcctcct cgtgatgata gggttgatca tcagccttct cttcccctgg 6480 cgccgcagat ccaagaaacc acctcttccg tcccgcatgt agatatccca ttccaatggt 6540 tgtccgcttc gctcaccggc gaaaaggatg tccagcagac cgtgtctctt tcagcctctc 6600 agactctctc caaactctgg gccctttacc ggcacgctga attgcgttcg gtcgaggctg 6660 agtttgtccc cacagcctca tccttctcaa agcccatctc catctcttgc gcttggacaa 6720 tcgcctcaat cactcccgcc tccggcgatg agactgacta cttcggtggt cgatttctca 6780 ccatcggcgg cccggtcctc ctctcttcca ccacccacat tccatgtgac ctccgttcca 6840 tcaaccctac cctccgctcc agcgtggagt tccgcgacac ccctcgcgtc actttcaccg 6900 ctcgcgcggt cgccggcgcc accgccaaca cccccctggc gcacttcatc atccgaggag 6960 ttcttcgact ctctggtcca tccggcgcca agtttgcttg atcttcaaaa tcaagatagg 7020 tgaaggaaaa cacctcccac cttgagttgg tctttatgct aaaccaaagc tttctgcaat 7080 ttaaatcccg aaagttctcc attctagcaa tagattacgt cgtaagtcgg tagcaagact 7140 tttcgttt 7148 //