ID   FJ442946; SV 1; linear; genomic RNA; STD; VRL; 1860 BP.
XX
AC   FJ442946;
XX
DT   01-DEC-2009 (Rel. 103, Created)
DT   20-FEB-2010 (Rel. 103, Last updated, Version 2)
XX
DE   Radish mosaic virus isolate CB9 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Radish mosaic virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus.
XX
RN   [1]
RP   1-1860
RX   DOI; 10.1007/s11262-009-0443-1.
RX   PUBMED; 20044790.
RA   Petrzik K., Koloniuk I.;
RT   "Emerging viruses in the genus Comovirus";
RL   Virus Genes 40(2):290-292(2010).
XX
RN   [2]
RP   1-1860
RA   Petrzik K.;
RT   ;
RL   Submitted (06-NOV-2008) to the INSDC.
RL   Department of Plant Virology, Biology Centre Academy of Sciences of the
RL   Czech Republic, Institute of Plant Molecular Biology, Branisovska 31, Ceske
RL   Budejovice 370 05, Czech Republic
XX
DR   MD5; 918215cb881f98a656d6bac2a2f467ca.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1860
FT                   /organism="Radish mosaic virus"
FT                   /isolate="CB9"
FT                   /mol_type="genomic RNA"
FT                   /country="Czech Republic"
FT                   /db_xref="taxon:328061"
FT   CDS             <1..>1860
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2D3N6"
FT                   /db_xref="InterPro:IPR003181"
FT                   /db_xref="InterPro:IPR003182"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D2D3N6"
FT                   /protein_id="ACS12878.1"
FT                   /translation="TSMTRSLLNRFSSANETEGTPLDTKIARTKILLTKVMAGGKILYT
FT                   ARLSDVLLNKDQRAAISFQRTHVQHKKLIALATLGVPENTGCALMMCYNSGVRGKAVVD
FT                   AYTASAEASVIWNPACQRQAMLEIDVNPCQSAWSYQYLRQTNSYFNVVCISGWTTTPLT
FT                   DLSMTIDWYLSSEESETSIYYASGGNSVIKLNRWMGRLIFPQGTETTMQRMPLAIGGGA
FT                   GGNGLVYMNMPNALCSLWRYMKGGVKFEVIKLSSPYVKATIAFFIAFTDVDATLPNLEA
FT                   YPHKLVQFAEIQDRVTIEFSKNEFVMAWSSQVHTNVPLDQDGCPYLYAVVHDCAGSTIP
FT                   GDFNIGVVLKEMVDVEAIGRHPGWKGAHPLPASPQGLRKSSSGVWNELYTVRAPPEAKS
FT                   TDVVQFAIDLIGVGISTAGRGTWSLETSNSPMNNLLRTATWKSGTIHFQVLMEGNPLIK
FT                   RGDWASYCEISLVQSAKDTTLSSRNWVMKDPSSWELEFDIKIEGPNAGFENWEAHLSNQ
FT                   TSWYLTFAIYNPDQTTTFTMNGMLNDDFCCAGNTLMPPFLEPQSTLSEKTPLSQMTFSY
FT                   EDNLVRDVDPPDQESAQERPETSSDQDRRLLQQRKRGFNNKFVF"
FT   mat_peptide     <1..1125
FT                   /product="large capsid protein"
FT                   /note="CP-L"
FT   mat_peptide     1126..>1860
FT                   /product="small capsid protein"
FT                   /note="CP-S"
XX
SQ   Sequence 1860 BP; 558 A; 361 C; 443 G; 496 T; 2 other;
     acatctatga cgcgctcatt gcttaacaga ttttcctcag ccaatgaaac agagggaacg        60
     ccacttgata ctaaaatagc aagaactaag atcttgttaa caaaggttat ggctggggga       120
     aagatcttgt acacagcacg tttaagtgat gttctcctta acaaagatca acgagcagct       180
     atttctttcc aaagaaccca tgtccagcac aaaaagttaa ttgctttagc aaccttggga       240
     gtcccagaaa acactgggtg cgctctgatg atgtgttaca acagtggagt gcgtggcaaa       300
     gcagttgttg atgcttatac agcgtcagca gaagctagtg tgatttggaa tccagcgtgt       360
     caaagacaag caatgcttga aatagatgtg aacccatgcc agagcgcctg gagctatcag       420
     tacctcagac aaaccaacag ctattttaat gtagtatgta tytcaggttg gacaacaact       480
     cctttaacgg atttgtctat gaccatagat tggtatttga gttctgagga aagcgagact       540
     tccatttact atgcctcagg aggcaattct gtgataaagc tgaaccgatg gatggggcgt       600
     ttgattttcc cgcagggaac agaaacaaca atgcaacgga tgcccttagc tataggaggt       660
     ggtgcaggag gaaatgggtt ggtgtatatg aatatgccta atgccttatg ttctctatgg       720
     agatacatga aaggaggcgt taagtttgag gtaatcaagc ttagttcccc ctacgtaaag       780
     gcgaccatag ctttcttcat agccttcaca gatgtcgatg caacattgcc aaatcttgaa       840
     gcgtatcccc acaaacttgt tcaatttgca gaaatacagg acagggtgac aattgagttt       900
     agtaaaaatg aatttgttat ggcctggtca tcacaggtgc atactaatgt gcccttggat       960
     caggatggtt gcccttattt gtatgcggtt gttcacgact gtgcaggttc caccattcca      1020
     ggagatttca atataggagt tgttctgaaa gaaatggttg atgtggaggc cattggaagg      1080
     catccaggat ggaaaggggc tcaccctttg ccagcgtcac cacaaggcct gaggaaaagt      1140
     tcatcgggag tatggaatga attgtacaca gtaagagctc cccctgaagc caaatccact      1200
     gacgttgttc aatttgcaat tgatcttata ggtgttggaa tatccacagc aggacgtggg      1260
     acgtggtctt tagagaccag taacagtccc atgaacaatc tactgagaac agccacgtgg      1320
     aaaagtggaa ctattcattt tcaggtgctt atggaaggga atccactgat caagagagga      1380
     gattgggctt cctactgtga aatttctttg gttcagagtg ctaaggacac cacattatcc      1440
     agtcgaaatt gggtgatgaa ggatccttcc tcatgggaat tggagtttga catcaaaatt      1500
     gaaggaccta atgctggttt tgagaattgg gaagctcatt tgagtaatca aacgagttgg      1560
     tacttaacat ttgctattta caaccctgat caaaccacta cgttcaccat gaatggaatg      1620
     ctcaatgatg atttttgttg tgctggcaat acactaatgc caccrtttct cgaaccacaa      1680
     agcacgttat cagaaaagac acctctatct cagatgacct tcagttatga ggataatctg      1740
     gtaagagatg ttgatccacc ggatcaagag agtgcgcaag aaagaccgga aacgagcagt      1800
     gatcaagatc gcagactgtt acagcaaaga aagcgtggtt ttaataataa atttgtcttt      1860
//