ID   FJ442944; SV 1; linear; genomic RNA; STD; VRL; 1878 BP.
XX
AC   FJ442944;
XX
DT   01-DEC-2009 (Rel. 103, Created)
DT   20-FEB-2010 (Rel. 103, Last updated, Version 3)
XX
DE   Turnip ringspot virus isolate HZ polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus;
OC   unclassified Comovirus.
XX
RN   [1]
RP   1-1878
RX   DOI; 10.1007/s11262-009-0443-1.
RX   PUBMED; 20044790.
RA   Petrzik K., Koloniuk I.;
RT   "Emerging viruses in the genus Comovirus";
RL   Virus Genes 40(2):290-292(2010).
XX
RN   [2]
RP   1-1878
RA   Petrzik K.;
RT   ;
RL   Submitted (06-NOV-2008) to the INSDC.
RL   Department of Plant Virology, Biology Centre Academy of Sciences of the
RL   Czech Republic, Institute of Plant Molecular Biology, Branisovska 31, Ceske
RL   Budejovice 370 05, Czech Republic
XX
DR   MD5; e8ff3910a9ed6ba2ef1f47085c4daa6b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1878
FT                   /organism="Turnip ringspot virus"
FT                   /isolate="HZ"
FT                   /mol_type="genomic RNA"
FT                   /country="Croatia"
FT                   /db_xref="taxon:392504"
FT   CDS             <1..>1878
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2D3N4"
FT                   /db_xref="InterPro:IPR003181"
FT                   /db_xref="InterPro:IPR003182"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D2D3N4"
FT                   /protein_id="ACS12876.1"
FT                   /translation="ASTTQSLLNKFASTRQMEGTPVETKIARTKIVLTKVMSGGNILYT
FT                   ERLSDVLSNVEQRAAIAFQRTHVQHKKLVALATINVPENTGCALMMCYNSGIRGKAVVD
FT                   AYTASAEASTIWNPACQQQARLEINVNPCKSAWSYQFLRQSKGVFNVVCISGWTTTPST
FT                   DLSLTIDWYLSDKDAEPETYCAVGINPKIVLNRWMGKLSFPQGTEVTLRRMPLAIGGGA
FT                   GGKGLVYMNMPNALCSLWRYMRGGMSFEVIKLSSPYIKATIAFFIAFTDVDATVPNLEA
FT                   YPHKLVQFSEIQERVTISFDKEDFVMAWSTQVHNSVPLSEDGCPYLYAVVHDSVGSTIP
FT                   GDFNIGVVLKEMNEVESIGRHPGWKGARPLAVSPQGLRKSSSGVWNELFMVRGPPEAKS
FT                   TDVVQFAIDLVGVGIATKNPGTWSIETNNSPMNNLMRTATWKSGTFHFQVLMEGNPLIK
FT                   RGDWSSYCEVSLTQSTKVSTMSSRNWVMKDPTSWELEFDIKIEGPNDGFENWESHFSNQ
FT                   TSWFLVFSVFNPDQSTVFVVNGMIDDDCWFAGNTLMPPFLEPESVSSRHSFLSSVQFDY
FT                   GTTSSRRAPSLPADSEDEEGRRSERVRQLERYRERDDQNRGNLATFVRRS"
FT   mat_peptide     <1..1125
FT                   /product="large capsid protein"
FT                   /note="CP-L"
FT   mat_peptide     1126..>1878
FT                   /product="small capsid protein"
FT                   /note="CP-S"
XX
SQ   Sequence 1878 BP; 552 A; 356 C; 460 G; 510 T; 0 other;
     gcaagcacca cccaatcatt gttaaacaag tttgctagta cacgacaaat ggaagggaca        60
     ccagttgaga ccaaaattgc tagaaccaag atagttttaa ccaaggttat gtctggtggc       120
     aatattctgt acactgagcg cctgagtgat gttctttcca atgttgaaca acgggctgct       180
     attgctttcc aacggacaca tgtccagcac aagaagcttg tagcattagc cactatcaat       240
     gtgccagaaa acacaggctg tgctttgatg atgtgttaca acagtggtat ccgaggcaaa       300
     gcagttgttg atgcttatac ggcttcagct gaagccagca ccatatggaa tccagcgtgt       360
     caacaacaag cgcgtttaga aataaatgtg aatccgtgta agagtgcctg gagttatcaa       420
     tttttgcgac aatccaaagg agtgttcaat gttgtttgca tatcaggctg gaccacaacg       480
     ccatcaacgg acctttcgct cacaatagat tggtatctta gtgataagga cgcagaacca       540
     gaaacatatt gtgctgtggg aatcaatccc aagattgttc ttaatcgctg gatgggaaag       600
     ctttcttttc cacaaggtac ggaggtcaca ctgcgcagaa tgccacttgc tataggagga       660
     ggtgctggag gaaaaggatt ggtatatatg aatatgccca atgctttatg ctctttgtgg       720
     agatatatgc gtggtggaat gtcctttgaa gttatcaaat tgagctctcc ttatatcaag       780
     gccactatag catttttcat agcatttacg gatgttgatg ccacagttcc aaatctagag       840
     gcttatcccc ataagctagt ccaattttcg gaaatacaag agagggttac aatatctttt       900
     gataaagaag attttgtgat ggcatggtcc acacaggtgc acaatagtgt tcctttatct       960
     gaggatggtt gcccttatct gtatgctgtg gttcatgaca gtgttggctc aacaataccc      1020
     ggagatttta acattggagt ggtgcttaaa gagatgaatg aggttgaatc cattggaaga      1080
     catcccggat ggaaaggagc gcggccattg gctgtaagtc cgcagggttt gcggaagagt      1140
     tcctctggcg tgtggaatga attgtttatg gtcaggggac caccagaagc caagtcaact      1200
     gatgttgttc agtttgcaat agatcttgtt ggggttggga tagcaactaa gaatccagga      1260
     acatggtcca ttgaaacaaa taacagtcca atgaacaatc ttatgcgaac ggcgacctgg      1320
     aaaagtggga cctttcattt ccaagtgcta atggaaggaa atcctctcat taaaagagga      1380
     gattggtctt cgtactgtga ggtttcccta acacagagta ccaaggtttc taccatgtcg      1440
     agcagaaact gggtgatgaa agatccaaca tcgtgggaat tagaatttga cattaaaatt      1500
     gaaggtccta atgacggatt tgaaaactgg gaatcacatt tcagcaatca aacaagttgg      1560
     tttctcgtct tctctgtttt caacccagac caatcaactg tctttgtggt gaatggaatg      1620
     atagatgatg attgttggtt tgctggcaat actctgatgc caccgtttct tgaaccggaa      1680
     agtgtcagta gtaggcattc atttctgtca tcagttcaat ttgactatgg gactacatca      1740
     agtagaaggg caccttctct accagcagac agcgaagatg aagaggggag aaggtcagag      1800
     agggttcgac agttagaaag gtacagagaa agagatgatc aaaatcgagg aaatcttgca      1860
     acattcgtgc gacgctct                                                    1878
//