ID   FJ442941; SV 1; linear; genomic RNA; STD; VRL; 1128 BP.
XX
AC   FJ442941;
XX
DT   01-DEC-2009 (Rel. 103, Created)
DT   20-FEB-2010 (Rel. 103, Last updated, Version 2)
XX
DE   Red clover mottle virus isolate Sl 12 large capsid protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Red clover mottle virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus.
XX
RN   [1]
RP   1-1128
RX   DOI; 10.1007/s11262-009-0443-1.
RX   PUBMED; 20044790.
RA   Petrzik K., Koloniuk I.;
RT   "Emerging viruses in the genus Comovirus";
RL   Virus Genes 40(2):290-292(2010).
XX
RN   [2]
RP   1-1128
RA   Petrzik K.;
RT   ;
RL   Submitted (06-NOV-2008) to the INSDC.
RL   Department of Plant Virology, Biology Centre Academy of Sciences of the
RL   Czech Republic, Institute of Plant Molecular Biology, Branisovska 31, Ceske
RL   Budejovice 370 05, Czech Republic
XX
DR   MD5; e7257f9fb014ee92c47d146149772e56.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1128
FT                   /organism="Red clover mottle virus"
FT                   /lab_host="red clover"
FT                   /isolate="Sl 12"
FT                   /mol_type="genomic RNA"
FT                   /country="Czech Republic"
FT                   /db_xref="taxon:12262"
FT   CDS             <1..>1128
FT                   /codon_start=1
FT                   /product="large capsid protein"
FT                   /note="CP-L"
FT                   /db_xref="GOA:D2D3N1"
FT                   /db_xref="InterPro:IPR003181"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D2D3N1"
FT                   /protein_id="ACS12873.1"
FT                   /translation="TDTDLFKLSLDDTSSPKGSLLDTRFAQKKVLIPKAMAGGADLLSS
FT                   NLYDVLSGNSFRATLALARTHVVEGKIRCICTINLPENTGCCLAITVNSSNRGQFSTDI
FT                   YTTGSQDRILWNPACSKNCDFSFNPNPCGTAWSLEFLRRTKFHLSVTCVSGWSAQPQTD
FT                   IAMTMDWYVSNKPCVPCIYNVGTPGQNVWVNRWMGKLSFPQGSQNQFKQMPLAIGGGAG
FT                   AKNSILMNMTNAFLSLWRYFHGDLVFEVQKMSSPFIKSTVTFFIGFGGLPFSENLEDFP
FT                   NKLIQFGEVQERVEITFTRKEFLTAWSTQVDPAGPVAGDGCPYLCAMVHDSTASTITGD
FT                   FNLGVTLLRIENFVGIGRNPGIQGARLLGSMQAEAQ"
XX
SQ   Sequence 1128 BP; 317 A; 206 C; 278 G; 327 T; 0 other;
     actgacactg atttgttcaa attaagcttg gatgatacgt cgagtcccaa aggatcacta        60
     ttagacacaa gatttgccca aaagaaagtt ttgattccaa aagcaatggc agggggagct       120
     gacttactga gttcaaatct ttatgatgtg ctatcgggaa attcttttag agccactcta       180
     gcattagcaa gaactcatgt ggttgaagga aaaatcaggt gtatttgcac cataaactta       240
     cctgagaata ctgggtgttg cttggcaatc acagttaata gcagcaacag agggcagttc       300
     agtacagata tatacacaac aggttctcag gacagaattt tgtggaatcc agcttgttcc       360
     aaaaattgtg atttctcctt taatccaaac ccctgcggga ctgcatggag cttggaattc       420
     ttgcgtcgta ctaagtttca cttgagtgtt acatgtgtgt cggggtggtc agcccaaccg       480
     cagacagaca ttgccatgac aatggattgg tatgtgagta ataaaccgtg tgtaccatgt       540
     atttacaatg ttggaacgcc tggacaaaat gtctgggtta ataggtggat gggcaaactg       600
     tctttccctc aaggatctca aaatcagttt aaacagatgc ccttggccat aggtggtggt       660
     gctggagcaa aaaatagtat tcttatgaat atgaccaatg cttttttgag tctctggcgc       720
     tattttcatg gtgatctagt ttttgaggtg cagaaaatga gctctccttt tataaagtca       780
     actgtgactt tcttcatagg ttttgggggt cttcccttta gtgaaaattt ggaagatttt       840
     ccaaataaac tgattcaatt tggagaagtg caagaaagag tggagataac atttactagg       900
     aaggaattcc tgacggcgtg gtctactcag gttgatccag ctggacctgt ggctggtgat       960
     gggtgccctt atttgtgtgc tatggtacat gattcaacag ccagtaccat aacgggagac      1020
     tttaacttgg gtgttaccct attgcgcatt gagaattttg tgggcatagg cagaaaccct      1080
     ggaatacagg gggcccgatt gctaggaagc atgcaagcgg aagcccag                   1128
//