ID   FJ442940; SV 1; linear; genomic RNA; STD; VRL; 1797 BP.
XX
AC   FJ442940;
XX
DT   20-FEB-2010 (Rel. 103, Created)
DT   20-FEB-2010 (Rel. 103, Last updated, Version 1)
XX
DE   Red clover mottle virus isolate Sl 9 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Red clover mottle virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus.
XX
RN   [1]
RP   1-1797
RX   DOI; 10.1007/s11262-009-0443-1.
RX   PUBMED; 20044790.
RA   Petrzik K., Koloniuk I.;
RT   "Emerging viruses in the genus Comovirus";
RL   Virus Genes 40(2):290-292(2010).
XX
RN   [2]
RP   1-1797
RA   Petrzik K.;
RT   ;
RL   Submitted (06-NOV-2008) to the INSDC.
RL   Department of Plant Virology, Biology Centre Academy of Sciences of the
RL   Czech Republic, Institute of Plant Molecular Biology, Branisovska 31, Ceske
RL   Budejovice 370 05, Czech Republic
XX
DR   MD5; 40d1f9a0e9af5ce217b60fc1b38df7af.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1797
FT                   /organism="Red clover mottle virus"
FT                   /lab_host="red clover"
FT                   /isolate="Sl 9"
FT                   /mol_type="genomic RNA"
FT                   /country="Czech Republic"
FT                   /db_xref="taxon:12262"
FT   CDS             <1..1773
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D3TU03"
FT                   /db_xref="InterPro:IPR003181"
FT                   /db_xref="InterPro:IPR003182"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D3TU03"
FT                   /protein_id="ACS12872.1"
FT                   /translation="TDTDLFKLSLDDTSSPKGSLLDTRFAQKKVLIPKAMAGGADLLSS
FT                   NLYDVLSGSSFRASLALARTHVVEGKIRCICTINLPENTGCCLAITVNSSNRGQFSTDI
FT                   YTTGSQDRILWNPACSKNCDFSFNPNPCGTAWSLEFLRRTKFHLSVTCVSGWSAQPQTD
FT                   IAMTMDWYVSNKPCAPCIYNVGTPGQNVWVNRWMGKLSFPQGSQNQFKQMPLAIGGGAG
FT                   AKNSILMNMTNAFLSLWRYFHGDLVFEVQKMSSPFIKSTVTFFIGFGGLPFSENLEDFP
FT                   NKLIQFGEVQERVEITFTRKEFLTAWSTQVDPAGPVAGDGCPYLCAMVHDSTASTITGD
FT                   FNLGVTLLRIENFVGIGRNPGIQGARLLGSMQAEAQGGVVRTTDGVYSTCFRVRTPLAL
FT                   KDSGSFTCDLIGGGITTDSNTGWNLTALNTPVANLLRTAAWKRGTIHVQVAMSGSTVKR
FT                   LDWTSTVQLFLRQSMNTSSYDARVWAISKPGAAILEFSFDVEGPNNGFEMWEANWASQT
FT                   SWFLEFLISNVTQNTLFEVSMKLDSNFCVAGTTLMPPFSVTASPDSRPLLGVKTSTPAK
FT                   KYVGGGLQAGPSPG"
FT   mat_peptide     <1..1128
FT                   /product="large capsid protein"
FT                   /note="CP-L"
FT   mat_peptide     1129..1770
FT                   /product="small capsid protein"
FT                   /note="CP-S"
XX
SQ   Sequence 1797 BP; 493 A; 342 C; 444 G; 518 T; 0 other;
     actgacactg atttgttcaa attaagtttg gatgatacgt cgagtcccaa aggatcacta        60
     ttagacacaa gatttgccca aaagaaagtt ttgattccaa aagcaatggc agggggagct       120
     gacttactga gttcaaatct ttatgatgtg ctatcgggaa gctcttttag agcctctcta       180
     gcattagcaa gaactcatgt ggttgaagga aaaatcaggt gtatttgcac cataaattta       240
     cctgagaata ctgggtgttg tttggcaatc acagttaata gcagcaacag agggcagttc       300
     agtacagata tatacacaac aggttctcag gacagaattt tgtggaatcc agcttgttcc       360
     aaaaattgtg atttctcctt taatccaaac ccttgcggga ctgcatggag cttggaattc       420
     ttgcgtcgta ctaagtttca tttgagtgtt acatgtgtgt cggggtggtc agcccaaccg       480
     cagacagata ttgccatgac aatggattgg tatgtgagta ataaaccgtg tgcaccatgt       540
     atttacaatg ttggaacgcc tggacaaaat gtttgggtta ataggtggat gggcaaactg       600
     tctttccctc aaggatctca aaatcagttt aaacagatgc ccttggccat aggtggtggt       660
     gctggagcaa agaatagtat tcttatgaat atgaccaatg cttttttgag tctctggcgc       720
     tattttcatg gcgatctagt ttttgaggtg cagaaaatga gctctccttt tataaagtca       780
     actgtgactt tcttcatagg ttttgggggt cttcctttta gtgaaaactt ggaagatttt       840
     ccaaataaac tgattcaatt tggagaagtg caagaaagag tggagataac atttaccagg       900
     aaggaatttc taacggcgtg gtctactcag gttgatccag ctggacctgt ggctggtgat       960
     gggtgccctt atttgtgtgc tatggtacat gattcaacag ccagtaccat aacgggagac      1020
     tttaacttgg gtgttaccct attgcgcatt gagaattttg tgggcatagg cagaaatcct      1080
     ggaatacagg gggcccgatt gctaggaagc atgcaagcgg aagcccaggg tggcgtcgta      1140
     cgcactactg atggtgtgta cagcacatgc tttagagtta gaaccccact ggcgcttaaa      1200
     gattcaggat ctttcacttg cgatttgata ggagggggaa taaccacaga ttcaaataca      1260
     ggatggaatc tgactgcatt gaatactcct gttgccaacc ttttacgcac agctgcttgg      1320
     aaaagaggta ctatacatgt gcaagtggca atgtctggca gtacagtcaa aagattagac      1380
     tggacttcaa ctgtgcagct gttccttagg caatccatga ataccagtag ttatgatgct      1440
     cgagtgtggg cgatttcaaa accaggggca gcaatattag aattttcttt tgacgtggag      1500
     ggccctaaca atggatttga aatgtgggaa gcaaattggg cctctcaaac tagctggttc      1560
     ctagagttct tgatctccaa tgtgactcaa aacacattat ttgaggttag catgaaattg      1620
     gacagcaatt tctgtgtggc aggaacaact cttatgccgc ccttctctgt gacagcaagt      1680
     cctgattcgc gcccactttt aggcgtgaaa acatccacac ctgctaagaa gtatgttggt      1740
     ggtggcctcc aagctggccc ttcaccaggt tgaggtctca tgttgcatgg tatagtt         1797
//