ID FJ441297; SV 1; linear; genomic DNA; STD; VRL; 4746 BP. XX AC FJ441297; XX DT 16-DEC-2008 (Rel. 98, Created) DT 16-DEC-2008 (Rel. 98, Last updated, Version 1) XX DE Mouse parvovirus 5a, complete genome. XX KW . XX OS Mouse parvovirus 5a OC Viruses; Parvoviridae; Parvovirinae; Protoparvovirus. XX RN [1] RP 1-4746 RA Henderson K.S., Jennings S.M., Hayes B.J., Perkins C.L.; RT "Identification of Mouse Parvoviruses 4 and 5"; RL Unpublished. XX RN [2] RP 1-4746 RA Henderson K.S., Jennings S.M., Hayes B.J., Perkins C.L.; RT ; RL Submitted (06-NOV-2008) to the INSDC. RL Research Animal Diagnostic Services, Charles River, 251 Ballardvale St., RL Wilmington, MA 01887, USA XX DR MD5; cb196663e128ad10f6c06b78115361c2. DR EuropePMC; PMC3838256; 24109231. XX FH Key Location/Qualifiers FH FT source 1..4746 FT /organism="Mouse parvovirus 5a" FT /host="mouse" FT /isolate="MPV-5a" FT /mol_type="genomic DNA" FT /country="USA" FT /isolation_source="tumor cell line" FT /collection_date="08-Feb-2007" FT /db_xref="taxon:576714" FT CDS join(160..413,1889..2179,2298..2346) FT /codon_start=1 FT /product="NS2 rare" FT /note="minor non-structural protein rare isoform" FT /db_xref="UniProtKB/TrEMBL:B7U6Y1" FT /protein_id="ACJ63462.1" FT /translation="MAGNAYSDEVLGTTNWLKEKSNQEVFSFVFKTEDVQLNGKDIGWN FT NYRKELQEDELKSLQRGAETTWDQSEDMEWESTVDEVTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRLGTSRLQVPGTREQP" FT CDS join(160..413,1889..2179,2276..2297) FT /codon_start=1 FT /product="NS2 major" FT /note="minor non-structural protein major isoform" FT /db_xref="UniProtKB/TrEMBL:B7U6Y2" FT /protein_id="ACJ63463.1" FT /translation="MAGNAYSDEVLGTTNWLKEKSNQEVFSFVFKTEDVQLNGKDIGWN FT NYRKELQEDELKSLQRGAETTWDQSEDMEWESTVDEVTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRPEITWF" FT CDS join(160..413,1889..2201) FT /codon_start=1 FT /product="NS2 minor" FT /note="minor non-structural protein minor isoform" FT /db_xref="UniProtKB/TrEMBL:B7U6Y3" FT /protein_id="ACJ63464.1" FT /translation="MAGNAYSDEVLGTTNWLKEKSNQEVFSFVFKTEDVQLNGKDIGWN FT NYRKELQEDELKSLQRGAETTWDQSEDMEWESTVDEVTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRYDGASS" FT CDS 160..2178 FT /codon_start=1 FT /product="NS1" FT /note="major non-structural protein" FT /db_xref="GOA:B7U6Y4" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR021076" FT /db_xref="InterPro:IPR021972" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B7U6Y4" FT /protein_id="ACJ63465.1" FT /translation="MAGNAYSDEVLGTTNWLKEKSNQEVFSFVFKTEDVQLNGKDIGWN FT NYRKELQEDELKSLQRGAETTWDQSEDMEWESTVDEVTKKQVFIYDSLVKKCLFEVLST FT KNIAPSDVNWFVQHEWGRDQGWHCHVLIGGKDFSQAQGKWWRRQLSVYWSRWLVTACNV FT QLTPAERIKLREIAEDSEWVTLLTYKHKQTKKDYTKCVLFGNIIAYYFLTKKKISTSPP FT RDGGYFLSSDSGWKTNFLKEGERHLVSKLYTDDMRPETVETTVTTAQETKRGRIQTKKE FT VSIKTTLKELVHKRVTSPEDWMMMQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTA FT FDLILEKAETSKLTNFSLPDTRTCKIFAFHGWNYVKVCHAICCVLNRQGGKRNTVLFHG FT PASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAI FT CSGQTIRIDQKGKGSKQIEPTPVIMTTNENITVVKIGCEERPEHTQPIRDRMLNIHLTH FT TLPGDFGLVDKNEWPMICAWLVKNGYQSTMASYCAKWGKVPDWTENWAEPKVPTPINSL FT GSARSPFTTPKSTPLSQNYALTPLASDLEDLALEPWSTPNTPVAGTAETQNTGEAGSKA FT CQDGQLSPTWSEIEEDLRACFGAEPLKKDFSEPLNLD" FT CDS join(2185..2215,2298..4456) FT /codon_start=1 FT /product="VP1" FT /note="minor capsid protein" FT /db_xref="GOA:B7U6Y5" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:B7U6Y5" FT /protein_id="ACJ63466.1" FT /translation="MAPPAKRAKRGWVPPGYKYLGPGNSLDQGEPTNPSDAAAKEHDEA FT YDKYIKSGKNPYLYFSAADQRFIDQTKDAKDWGGKVGHYFFRTKRAFAPRLASSSEPGT FT SGVSIAGKRTKPPAHIFINQARAKKKRASLAAQQRTQTMSDGAEQPDSGNAVQSAARVE FT RAADGPGGSGGGGSGGGGVGVSTGSYDNQTHYKFLGDGWVEVTAYSTRIVHLNMPKSEN FT YCRVRVHNKNDTSVAGQMALDDAHEQIWTPWSLIDSNAWGVWFQPSDWQFICNNMSHMN FT LHSLDQELFNVVIKTVTEQNTGPEAIKVYNNDLTASMMVALDSNNILPYTPATDNQETL FT GFYPWKPTMPSPYRYYFNCDRNLSVTYATETGTITDTMAAASGMSSQFFTIENTQRIQL FT LRTGDEFATGTYYFETEPIKLSHTWQSNRQLGQPPQITELPSSDNEDATLVARGGRSGV FT TQIYGSNDVTEATRVRPAQVGFCQPHDNFETGRAGPFKVPVVPANITQGQDHDANGSLR FT YTYDKQHGQNYASNDTRDRFTWDGISYDSGRWTDRCFVTSTPFTSPPALNNILTNSDPI FT GDKTGMHYQHIFNSYGPLTAFPHPAPIYPQGQIWDKELDLEHKPRLHVQAPFVCKNNAP FT GQLLVRLAPNLTDQYDPNSSTLSRIVTYGTFFWKGKLTLKAKLRPNATWNPVYQVSAQY FT QSNNDYMSIHKWLPSATGNMQNVPLLSRPVARNTY" FT CDS 2693..4456 FT /codon_start=1 FT /product="VP2" FT /note="major capsid protein" FT /db_xref="GOA:B7U6Y6" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:B7U6Y6" FT /protein_id="ACJ63467.1" FT /translation="MSDGAEQPDSGNAVQSAARVERAADGPGGSGGGGSGGGGVGVSTG FT SYDNQTHYKFLGDGWVEVTAYSTRIVHLNMPKSENYCRVRVHNKNDTSVAGQMALDDAH FT EQIWTPWSLIDSNAWGVWFQPSDWQFICNNMSHMNLHSLDQELFNVVIKTVTEQNTGPE FT AIKVYNNDLTASMMVALDSNNILPYTPATDNQETLGFYPWKPTMPSPYRYYFNCDRNLS FT VTYATETGTITDTMAAASGMSSQFFTIENTQRIQLLRTGDEFATGTYYFETEPIKLSHT FT WQSNRQLGQPPQITELPSSDNEDATLVARGGRSGVTQIYGSNDVTEATRVRPAQVGFCQ FT PHDNFETGRAGPFKVPVVPANITQGQDHDANGSLRYTYDKQHGQNYASNDTRDRFTWDG FT ISYDSGRWTDRCFVTSTPFTSPPALNNILTNSDPIGDKTGMHYQHIFNSYGPLTAFPHP FT APIYPQGQIWDKELDLEHKPRLHVQAPFVCKNNAPGQLLVRLAPNLTDQYDPNSSTLSR FT IVTYGTFFWKGKLTLKAKLRPNATWNPVYQVSAQYQSNNDYMSIHKWLPSATGNMQNVP FT LLSRPVARNTY" XX SQ Sequence 4746 BP; 1570 A; 975 C; 1030 G; 1171 T; 0 other; tcagttctaa aaatgataag cggttcaggg agtttaaacc aaggcgcgaa aaggaagtgg 60 gcgtggttta aagtatataa gcaactactg aagtcagtta cttatctttt ctttcattct 120 gtgagtcgag acacacagaa agagagcaac caactaacca tggctggaaa tgcttactct 180 gatgaagttt tgggaacaac caactggtta aaggaaaaaa gtaaccagga agtgttctca 240 tttgttttta aaactgaaga tgttcaactg aatggaaaag atattggatg gaataattac 300 agaaaggagc tgcaagagga cgagctaaaa tctttacaac gaggagcgga aactacctgg 360 gaccaaagcg aggacatgga atgggaatct acagtggatg aagtgaccaa aaagcaagta 420 ttcatttatg actctttagt taaaaaatgt ttgtttgaag tacttagcac aaagaacata 480 gctcctagtg atgttaattg gtttgtgcag catgaatggg gaagagacca aggctggcat 540 tgccatgtac taattggagg caaagacttt agtcaagctc aaggaaagtg gtggagaagg 600 cagctaagtg tttactggag cagatggttg gtaacagctt gtaatgtaca gctaacacca 660 gctgaaagaa ttaaactaag agaaatagca gaagacagtg aatgggttac cttgctcact 720 tataagcata agcaaaccaa aaaggactat accaagtgtg ttctttttgg aaacataatt 780 gcttactact ttttaactaa aaagaaaata agcaccagtc cgccaagaga cggaggctat 840 tttcttagca gtgactctgg ctggaaaact aactttttaa aagagggcga acgccatcta 900 gtgagcaaac tatacactga tgacatgcgg ccagaaacgg ttgaaaccac agtaaccact 960 gcgcaggaaa ctaagcgcgg cagaattcaa actaaaaaag aggtttcaat taaaaccaca 1020 cttaaagagc tggtgcataa gagagtaacc tcaccagaag actggatgat gatgcagcca 1080 gacagttata ttgaaatgat ggctcaacca ggtggagaaa acctgctaaa aaatacgcta 1140 gagatttgta cactaactct agctagaacc aaaacagcat ttgacttgat tttagaaaaa 1200 gctgaaacca gcaaactaac caacttttca ctgccggaca caagaacctg caaaattttt 1260 gcttttcatg gctggaacta tgttaaagtt tgccatgcta tttgctgtgt tctaaacaga 1320 caaggaggca agagaaatac tgttttattt catggaccag ccagcacagg caaatccatt 1380 attgcacaag ccatagcaca ggcagttggt aatgttggtt gctataatgc agcaaatgtg 1440 aactttccat tcaatgactg taccaacaag aacttaattt gggtggaaga agctggtaac 1500 tttggacaac aagtaaacca gtttaaagcc atttgctctg gtcaaacaat tcgcattgat 1560 caaaaaggaa aaggcagcaa gcagattgaa ccaacaccag tcatcatgac cacaaatgaa 1620 aacattacag tggtcaaaat aggctgcgag gaaagaccag aacacactca accaatcaga 1680 gacagaatgc ttaacattca tctaacacat acattgcctg gtgactttgg tttggttgac 1740 aaaaatgagt ggcccatgat ttgtgcttgg ttggtaaaga atggttacca atctaccatg 1800 gcaagctact gtgctaaatg gggcaaagtt cctgattgga cggaaaactg ggcggagccg 1860 aaggtgccga ctcctataaa ttcactaggt tcggcacgct caccattcac gacaccgaaa 1920 agtacgcctc tcagccagaa ctatgcacta actccacttg catcggatct cgaggacctg 1980 gctttagagc cttggagcac accaaatact cctgttgcgg gcactgcaga aacccagaac 2040 actggggaag ctggttccaa agcctgccaa gatggtcaac tgagcccaac ttggtcagag 2100 atcgaggagg atttgagagc gtgcttcggt gcggaaccgt tgaagaaaga cttcagcgag 2160 ccgctgaact tggactaagg tacgatggcg cctccagcta aaagagctaa aagaggtaag 2220 ggtttaaggg atggttggtt ggtggggtat taatgtttaa ctacctgttt tacaggcctg 2280 aaatcacttg gttctaggtt gggtacctcc aggctacaag tacctgggac cagggaacag 2340 ccttgaccaa ggagaaccaa ccaatccatc tgacgccgct gccaaagagc acgacgaggc 2400 ctacgacaaa tacatcaaat ctggaaaaaa tccttacctg tacttctctg ctgctgatca 2460 acgctttatt gaccaaacca aggacgctaa agactgggga ggaaaggttg gtcactactt 2520 ttttagaacc aagcgcgctt ttgcacctag gcttgctagt agctctgagc ctggaacttc 2580 tggtgtgagc atagctggta aacgtaccaa accacctgct cacatcttta ttaaccaagc 2640 tagagctaaa aaaaaacgtg cttctcttgc tgcacaacaa agaactcaga caatgagtga 2700 tggcgccgag caacctgaca gcggaaacgc tgtccagtca gctgctagag ttgagcgagc 2760 ggctgacggt cctggaggtt ctgggggtgg gggctctggc gggggtgggg ttggcgtttc 2820 tactgggagt tatgataatc agacgcatta taagttttta ggtgatggtt gggtagaagt 2880 tactgcttac agcacacgca tagtacattt aaatatgccc aaatcagaaa actattgcag 2940 agtgcgcgtg cacaacaaaa atgacacaag cgtagcaggg cagatggctc tagatgatgc 3000 tcatgaacaa atttggacac catggagcct aattgattct aatgcttggg gagtttggtt 3060 tcaaccaagt gactggcaat ttatttgcaa caatatgagt cacatgaatt tgcattcact 3120 tgatcaagag ctgtttaatg tagtaattaa aacagtcact gaacaaaaca caggacctga 3180 agccatcaag gtatacaaca atgaccttac tgcttcaatg atggttgctc ttgattctaa 3240 caacatactg ccttacacac cagcaacaga caaccaagaa acacttggct tttatccttg 3300 gaaaccaacc atgccaagtc cttacaggta ctactttaac tgtgacagaa atttgtcagt 3360 gacttatgca actgaaacag gaacaattac tgacacaatg gctgctgcca gtggaatgag 3420 ctctcaattt tttaccattg agaacactca gcgcattcag ctgcttagaa ctggtgatga 3480 atttgctact ggaacttact actttgaaac agaaccaatc aaactttctc acacatggca 3540 atcaaacagg cagctgggtc agcctccaca aatcactgag ctaccatctt ctgacaacga 3600 agatgctact ttagtagcta gaggtggcag atcaggtgtg acccaaattt atggcagcaa 3660 tgatgtgact gaagctacta gggtaaggcc tgcacaagtt ggattttgtc aacctcatga 3720 caattttgaa actggcagag caggcccttt taaggttcca gtagtgccag caaacattac 3780 ccaaggccaa gaccatgacg ccaacggcag cctaagatac acatatgaca aacaacatgg 3840 tcaaaactat gcaagcaatg acaccagaga cagatttact tgggatggta ttagctatga 3900 ttcaggcaga tggactgaca gatgctttgt tacctcaaca ccatttacat caccaccagc 3960 tcttaacaac atacttacaa actctgaccc cattggggac aaaactggca tgcattatca 4020 acacatattt aacagctatg gaccactaac tgcttttcca catcctgcgc cgatttatcc 4080 acaagggcaa atctgggaca aagaacttga tcttgaacac aaaccaagac tacacgtaca 4140 agctcctttt gtttgcaaga acaatgctcc aggtcaactt cttgttagac tagcaccaaa 4200 ccttactgac cagtatgatc ccaacagtag cactctttct agaattgtga cttatggcac 4260 atttttttgg aaaggcaagc tgactctaaa agcaaaactt agacctaatg ctacttggaa 4320 cccagtttac caagtaagtg ctcaatacca atctaacaat gactacatga gcatccacaa 4380 atggctgcca agtgctactg gcaacatgca gaatgtgcct ttgctttcta gacctgttgc 4440 tagaaatact tactaaccaa ccatgttctt tctttctgta cttcatatat tattaagact 4500 aataaaaata caacatagaa atataatatt acatatagat ttaagaaata gaataatatg 4560 gtactcacta actgttagaa ataatagaac ttttggaata acaagatagt tagttaatta 4620 atgttagata gaataagaag attatgtata atgggtaaaa gggtgggtgg ttggttggta 4680 ttcccttaga ctctatgtta aggaccaaaa aaataataaa acttttttaa aacctaacca 4740 agacta 4746 //