ID FJ440683; SV 1; linear; genomic DNA; STD; VRL; 4800 BP. XX AC FJ440683; XX DT 16-DEC-2008 (Rel. 98, Created) DT 16-DEC-2008 (Rel. 98, Last updated, Version 1) XX DE Mouse parvovirus 4a, complete genome. XX KW . XX OS Mouse parvovirus 4a OC Viruses; Parvoviridae; Parvovirinae; Protoparvovirus. XX RN [1] RP 1-4800 RA Banu L.A., Perkins C.L., Henderson K.S.; RT "Identification of Mouse Parvoviruses 4 and 5"; RL Unpublished. XX RN [2] RP 1-4800 RA Banu L.A., Perkins C.L., Henderson K.S.; RT ; RL Submitted (06-NOV-2008) to the INSDC. RL Research Animal Diagnostic Services, Charles River, 251 Ballardvale St., RL Wilmington, MA 01887, USA XX DR MD5; 54a50fd709e203ac5babee926d8bc835. DR EuropePMC; PMC2919183; 20819389. DR EuropePMC; PMC3838256; 24109231. XX FH Key Location/Qualifiers FH FT source 1..4800 FT /organism="Mouse parvovirus 4a" FT /host="mouse" FT /isolate="MPV-4a" FT /mol_type="genomic DNA" FT /country="France" FT /collection_date="24-May-2006" FT /db_xref="taxon:576712" FT CDS join(160..413,1889..2179,2298..2346) FT /codon_start=1 FT /product="NS2 rare" FT /note="minor non-structural protein rare isoform" FT /db_xref="UniProtKB/TrEMBL:B7U6W3" FT /protein_id="ACJ63468.1" FT /translation="MAGNAYSDEVLGATNWLKEKNNQEVFSFVFKNEDVQLNGKDIGWN FT SYKKELQEDELKSLQRGAETTWDQSEDMEWESAVDEVTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRLGTSWLQVPGTRKQP" FT CDS join(160..413,1889..2179,2276..2297) FT /codon_start=1 FT /product="NS2 major" FT /note="minor non-structural protein major isoform" FT /db_xref="UniProtKB/TrEMBL:B7U6W4" FT /protein_id="ACJ63469.1" FT /translation="MAGNAYSDEVLGATNWLKEKNNQEVFSFVFKNEDVQLNGKDIGWN FT SYKKELQEDELKSLQRGAETTWDQSEDMEWESAVDEVTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRPEITWF" FT CDS join(160..413,1889..2201) FT /codon_start=1 FT /product="NS2 minor" FT /note="minor non-structural protein minor isoform" FT /db_xref="UniProtKB/TrEMBL:B7U6W5" FT /protein_id="ACJ63470.1" FT /translation="MAGNAYSDEVLGATNWLKEKNNQEVFSFVFKNEDVQLNGKDIGWN FT SYKKELQEDELKSLQRGAETTWDQSEDMEWESAVDEVTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRYDGASS" FT CDS 160..2178 FT /codon_start=1 FT /product="NS1" FT /note="major non-structural protein" FT /db_xref="GOA:B7U6W6" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR021076" FT /db_xref="InterPro:IPR021972" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B7U6W6" FT /protein_id="ACJ63471.1" FT /translation="MAGNAYSDEVLGATNWLKEKNNQEVFSFVFKNEDVQLNGKDIGWN FT SYKKELQEDELKSLQRGAETTWDQSEDMEWESAVDEVTKKQVFIFDSLVKKCLFEVLNT FT KNIAPADVNWFVQHEWGKDQGWHCHVLIGGKDFSQAQGKWWRRQLNVYWSRWLVTACNV FT QLSPAERIKLREIAEDNEWVTLLTYKHKQTKKDYTKCVLFGNMIAYYFLTKKKISTSPP FT RDGGYFLSSDSGWKTNFLKEGERHLVSKLYTDDMRPETVETTVTTAQETKRGRIQTKKE FT VSIKTTLKELVHKRVTSPEDWMMMQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTA FT FDLILEKAETSKLTNFSLPDTRTCKIFAFHGWNYIKVCHAICCVLNRQGGKRNTVLFHG FT PASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAI FT CSGQTIRIDQKGKGSKQIEPTPVIMTTNENITVVRIGCEERPEHTQPIRDRMLNIHLTH FT TLPGDFGLVDKNEWPMICAWLVKNGYQSTMASYCAKWGKVPDWTENWAEPKVPTPINSL FT GSARSPFTTPKSTPLSQNYALTPLASDLEDLALEPWSTPNTPVAGTAETQNTGEAGSKA FT CQDGQLSPTWSEIEEDLRACFGAEPLKKDFNEPLNLD" FT CDS join(2185..2215,2298..4456) FT /codon_start=1 FT /product="VP1" FT /note="minor capsid protein" FT /db_xref="GOA:B7U6W7" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:B7U6W7" FT /protein_id="ACJ63472.1" FT /translation="MAPPAKRAKRGWVPPGYKYLGPGNSLDQGEPTNPSDAAAKEHDEA FT YDQYIKSGKNPYLYFSAADQRFIDQTKDAKDWGGKVGHYFFRTKRAFAPRLASSSEPGT FT SGVSIAGKRTKPPAHIFINQARAKKKRASLAAQQRTLTMSDGAEQPDSGSAVQSAARVE FT RAADGPGGSGGGGSGGGGVGVSTGSYDNQTHYRFLNDGWVEITAYSTRMVHLNMPKSEN FT YCRVRVHNTNDTSTAGNMTLDDAHEQIWTPWSLIDSNAWGVWFQPSDWQFICNNMSHIN FT LHSLDQELFNVVIKTVTEQNPGTEAIKVYNNDLTASMMVALDSNNILPYTPATDNQETL FT GFYPWKPTIPSPYRYYFNCDRSLSVTYTNQAGAITDTMATASGLSSQFFTIENTQRIQL FT LRTGDEFATGTYYFETEPIKLSHTWQSNRQLGQPPQITDLPTGDGDKATLVARGDRSGL FT TQIYGSNAVTEATRVRPAQVGFCQPHDNFETSRAGPFKVPVVPANITQGNEHDANGSLR FT YTYDKQHGQDWASNNSKDRFTWDAISYDSGRWADRCFIQSTPYTETPALNNILTNSDPI FT GGKTDIHYQNVFNSYGPVTAFPHPAPIYPQGQIWDKELDLEHKPRLHIQAPFVCKNNAP FT GQLLVRLAPNLTDQYDPNSGNLSRIVTYGTFFWKGKLTLKAKIRPNATWNPVYQVSAQH FT QSNTEYMSIHKWLPTATGNMQNVPLLSRPVARNTY" FT CDS 2693..4456 FT /codon_start=1 FT /product="VP2" FT /note="major capsid protein" FT /db_xref="GOA:B7U6W8" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:B7U6W8" FT /protein_id="ACJ63473.1" FT /translation="MSDGAEQPDSGSAVQSAARVERAADGPGGSGGGGSGGGGVGVSTG FT SYDNQTHYRFLNDGWVEITAYSTRMVHLNMPKSENYCRVRVHNTNDTSTAGNMTLDDAH FT EQIWTPWSLIDSNAWGVWFQPSDWQFICNNMSHINLHSLDQELFNVVIKTVTEQNPGTE FT AIKVYNNDLTASMMVALDSNNILPYTPATDNQETLGFYPWKPTIPSPYRYYFNCDRSLS FT VTYTNQAGAITDTMATASGLSSQFFTIENTQRIQLLRTGDEFATGTYYFETEPIKLSHT FT WQSNRQLGQPPQITDLPTGDGDKATLVARGDRSGLTQIYGSNAVTEATRVRPAQVGFCQ FT PHDNFETSRAGPFKVPVVPANITQGNEHDANGSLRYTYDKQHGQDWASNNSKDRFTWDA FT ISYDSGRWADRCFIQSTPYTETPALNNILTNSDPIGGKTDIHYQNVFNSYGPVTAFPHP FT APIYPQGQIWDKELDLEHKPRLHIQAPFVCKNNAPGQLLVRLAPNLTDQYDPNSGNLSR FT IVTYGTFFWKGKLTLKAKIRPNATWNPVYQVSAQHQSNTEYMSIHKWLPTATGNMQNVP FT LLSRPVARNTY" XX SQ Sequence 4800 BP; 1593 A; 972 C; 1050 G; 1185 T; 0 other; tcagttctaa aaatgataag cggttcaggg agtttaaacc aaggcgcgaa aagaaagtgg 60 gcgtggttta aagtatataa gcaactgcat aagtcagtta cttatctttt ctttcattct 120 gtgagtcgag acgcacagaa agagagcaac taactaacca tggctggaaa tgcttactct 180 gatgaagttt tgggagcaac caactggtta aaggaaaaaa ataatcagga agtgttctca 240 tttgttttta aaaatgagga tgttcaactg aatggaaaag atatcggatg gaatagttac 300 aaaaaggagc tgcaggagga cgagctgaaa tctttacaac gaggagcgga aactacctgg 360 gaccaaagcg aggacatgga atgggaatct gcagtggatg aagtgaccaa aaagcaagta 420 ttcatttttg actctttagt taaaaaatgt ttgtttgaag tgcttaacac aaagaacata 480 gctcctgctg atgttaattg gtttgtgcag catgaatggg gaaaagacca aggctggcac 540 tgccatgtac taattggagg caaggacttt agtcaagctc aaggaaagtg gtggagaagg 600 cagctaaatg tttactggag cagatggtta gtaacagcct gtaatgtaca gctatcacca 660 gctgaaagaa ttaaactaag agaaatagca gaagacaatg agtgggttac cttgctcact 720 tataagcata agcaaaccaa aaaggactat actaagtgtg ttctttttgg caacatgatt 780 gcttactact ttttaaccaa aaagaaaata agcactagtc caccaaggga cggaggctat 840 tttctgagca gtgactctgg ctggaaaact aactttttaa aagagggcga acgccatcta 900 gtgagcaaac tatatactga tgacatgcgg ccagaaacgg ttgaaaccac agtaaccact 960 gcgcaggaaa ctaagcgcgg cagaattcaa actaaaaaag aggtttcaat taaaaccaca 1020 cttaaagagc tggtgcataa aagagtaacc tcaccagaag actggatgat gatgcagcca 1080 gacagttaca ttgaaatgat ggctcaacca ggtggagaaa acctgctgaa aaatacgcta 1140 gagatttgta cactaactct agccagaacc aaaacagcat ttgacttgat tttagaaaaa 1200 gctgaaacca gcaaactaac aaacttttca ctgcctgata caagaacctg caagattttt 1260 gcttttcatg gctggaacta cattaaagtt tgccatgcta tttgctgtgt tttaaacaga 1320 caaggaggca aaagaaatac tgttttattt catggaccag ccagtacagg caaatctatc 1380 attgcacaag ccatagcaca ggcagttggt aatgttggtt gctataatgc agcaaatgtg 1440 aactttccat tcaatgactg taccaacaag aacttaattt gggtggaaga agctggtaac 1500 tttggacaac aagtaaacca gtttaaagcc atttgctctg gtcaaactat tcgcattgat 1560 caaaaaggaa aaggcagcaa gcagattgaa ccaacaccag tcatcatgac cacaaatgaa 1620 aacatcacag tggtcagaat aggctgcgaa gagagaccag aacacactca accaatcaga 1680 gacagaatgc ttaacattca tctaacacat acattgcctg gtgactttgg tttggttgac 1740 aaaaatgagt ggcccatgat ttgtgcttgg ttggtaaaga atggttacca atctaccatg 1800 gcaagctact gtgctaaatg gggcaaagtt cctgattgga cagaaaactg ggcggagccg 1860 aaggtgccga ctcctataaa ttcactaggt tcggcacgct caccattcac gacaccgaaa 1920 agtacgcctc tcagccagaa ctatgcacta actccacttg catcggatct cgaggacctg 1980 gctttagagc cttggagcac accaaatact cctgttgcgg gcactgcaga aacccagaac 2040 actggggaag ctggttccaa agcctgccaa gatggtcaac tgagcccaac ttggtcagag 2100 atcgaggagg atttgagagc gtgcttcggt gcggaaccgt tgaagaaaga cttcaacgag 2160 ccgctgaact tggactaagg tacgatggcg cctccagcta aaagagctaa aagaggtaag 2220 ggtttaaggg atggttggtt ggtggggtat taatgctcaa ctacctgttt tacaggcctg 2280 aaatcacttg gttctaggtt gggtacctcc tggctacaag tacctgggac caggaaacag 2340 ccttgaccaa ggagaaccaa ccaatccatc tgacgccgct gccaaagagc acgacgaggc 2400 ctacgaccaa tacatcaaat ctggaaaaaa tccttacctg tacttctctg ctgctgatca 2460 acgctttatt gaccaaacca aggacgctaa agactgggga ggaaaggttg gtcactactt 2520 ctttagaacc aagcgcgctt ttgcacctag gcttgctagt agctctgagc ctggaacttc 2580 tggtgtgagc atagctggta aacgtaccaa accacctgct cacattttta ttaaccaagc 2640 tagagctaaa aaaaaacgtg cttctcttgc tgcacagcaa agaactctga caatgagtga 2700 tggcgccgag caacctgaca gcggaagcgc tgtccagtca gctgcaagag ttgagcgagc 2760 ggctgacggt cctggaggtt ctgggggtgg gggctctggc gggggtgggg ttggcgtttc 2820 tactgggagt tatgataatc agacgcatta taggttttta aatgatggtt gggtagagat 2880 tactgcttac agcacacgca tggtgcactt aaatatgcct aaatcagaaa actattgcag 2940 agtgcgcgtg cacaacacaa atgacacaag cacagcagga aacatgactt tggatgatgc 3000 tcatgagcaa atttggacac catggagtct aattgactct aatgcttggg gagtttggtt 3060 tcaaccaagt gactggcaat ttatttgcaa caatatgagt cacataaatt tgcattcact 3120 tgaccaagag ctgtttaatg tagtcattaa aacagtaact gaacaaaacc caggaactga 3180 agccattaag gtatacaaca atgaccttac tgcttcaatg atggttgctc ttgattctaa 3240 caacatattg ccttacacac cagcaacaga caaccaagag acacttggtt tctatccatg 3300 gaaaccaacc ataccaagtc cttacaggta ctactttaat tgtgacagat ctttgtcagt 3360 cacttataca aaccaagcag gagccattac tgacacaatg gctactgcta gcgggctgag 3420 ctctcaattt tttactattg agaacactca gcgcattcag ctgcttagaa ctggtgatga 3480 atttgctact ggaacttact actttgaaac agaaccaatc aaactttctc acacatggca 3540 atcaaacagg cagctgggtc agcctccaca aattactgac ctaccaactg gtgacggtga 3600 caaagctact ttagtagcta gaggtgacag atcagggctg acccaaattt atggcagcaa 3660 tgctgtgact gaagctacta gagtgaggcc tgcacaagtt ggattttgtc aacctcatga 3720 caattttgaa accagcagag caggaccttt taaggttcca gtagtgccag caaacatcac 3780 acaaggcaat gagcatgacg ccaatggcag cctaaggtac acatatgaca aacaacatgg 3840 tcaagactgg gcaagtaaca acagcaaaga cagatttact tgggatgcta ttagctatga 3900 ttcaggcaga tgggctgaca gatgctttat tcagtcaaca ccatatacag aaacaccagc 3960 tctcaacaac atactaacaa actctgaccc cattgggggc aaaactgaca tacattatca 4020 gaatgtattt aacagctatg gaccagtaac tgcttttcca catcctgcgc cgatttatcc 4080 acaaggacaa atttgggaca aagaacttga tcttgaacac aaaccaagac tgcacataca 4140 agctcccttt gtttgtaaga acaatgctcc aggtcaactg cttgttagac ttgcaccaaa 4200 ccttactgac cagtatgatc ctaacagtgg caatctttct agaattgtga cttatggcac 4260 atttttttgg aagggcaagc taacactaaa agcaaagatt agacctaatg ctacttggaa 4320 tccagtttac caagtaagtg ctcaacacca atctaacact gaatacatga gcatccacaa 4380 atggctacca actgctactg gcaacatgca gaatgtgcct ttgctttcta gacctgttgc 4440 aagaaatact tactaaccaa ccatgctttt tctttctgta cttcacatat tattaagact 4500 aataaaaata caacatagaa atataatatt acatatagat ttaagaaata gaataatatg 4560 gtacttagta actgttagaa ataatagaac ttttggaata acaagatagt tagttaatta 4620 atgttaaata gaataagaag attatgtaca atgggtaaat agttagttga ttaatgttaa 4680 gtagaataag aagatgatgt aaaatggatg gaagggtggg tggttggttg gtattccctt 4740 agactttatg ttaaggacca aaaaaacaat aaaactcttt ttaaaaccta accaagacta 4800 //