ID FJ439817; SV 1; linear; genomic DNA; STD; VRL; 7317 BP. XX AC FJ439817; XX DT 02-NOV-2009 (Rel. 102, Created) DT 17-FEB-2017 (Rel. 131, Last updated, Version 3) XX DE Sugarcane bacilliform Guadeloupe D virus isolate BataviaD, complete genome. XX KW . XX OS Sugarcane bacilliform Guadeloupe D virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7317 RX DOI; 10.1016/j.virusres.2011.06.016. RX PUBMED; 21741419. RA Muller E., Dupuy V., Blondin L., Bauffe F., Daugrois J.H., Nathalie L., RA Iskra-Caruana M.L.; RT "High molecular variability of sugarcane bacilliform viruses in Guadeloupe RT implying the existence of at least three new species"; RL Virus Res. 160(1-2):414-419(2011). XX RN [2] RP 1-7317 RA Muller E., Dupuy V., Blondin L., Laboureau N., Iskra-Caruana M.-L., RA Daugrois J.-H.; RT "The high molecular variability of SCBV in Guadeloupe reveals existence of RT at least two new SCBV species, one of them was completely sequenced"; RL Unpublished. XX RN [3] RP 1-7317 RA Muller E., Dupuy V., Blondin L., Laboureau N., Iskra-Caruana M.-L., RA Daugrois J.-H.; RT ; RL Submitted (31-OCT-2008) to the INSDC. RL UMR BGPI, CIRAD, TA A54K, Campus International de Baillarguet, Montpellier RL 34398, France XX DR MD5; 0cefe853e24b64a692e43f3a5e5d7cea. DR EuropePMC; PMC5496340; 28680479. XX FH Key Location/Qualifiers FH FT source 1..7317 FT /organism="Sugarcane bacilliform Guadeloupe D virus" FT /host="sugarcane cultivar Batavia" FT /isolate="BataviaD" FT /mol_type="genomic DNA" FT /country="Guadeloupe:French West Indies" FT /collection_date="2002" FT /db_xref="taxon:1960253" FT CDS 536..1066 FT /codon_start=1 FT /product="ORF1 protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:D0QEI7" FT /protein_id="ACS44709.1" FT /translation="MTQSFWEKELEGWVNSNGLRQARLEFLDLANQEKVSHKDLAWNIQ FT VFGFRSDLAGKVNLAATHVAKGQIIKELREDNIKLQNSVRACKSAINAQKAEIQKLKES FT QDIIQQEVLGLKEALIQRRPLSKKDVEELVLRISEQPKFIEQQTEALTVELSEKVDRVE FT KLIHKLEKTLIGE" FT CDS 1063..1452 FT /codon_start=1 FT /product="ORF2 protein" FT /db_xref="UniProtKB/TrEMBL:D0QEI8" FT /protein_id="ACS44710.1" FT /translation="MSIANTRASVAYQEALAATKTLWEDNSTGLIEKSDGANNTNSARQ FT GNTIVFLLVRIDAKLAELSEKVTQLEVRIKNIEKAKQPTQDFKTNLEEITKKISDLKIS FT DKPKEKGGNLKVLRNPYDILKSIKN" FT CDS 1455..6833 FT /codon_start=1 FT /product="ORF3 protein" FT /db_xref="GOA:D0QEI9" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:D0QEI9" FT /protein_id="ACS44708.1" FT /translation="MSTRGRVTGTSSQTVTEPGQPLVEDQIRDYRRAQRARHEAARVAR FT NIGNIGRTIVGRQPREHTLALLMNPEVELQRSMQERARTVPAEVLYMTRRDDIHHRVYH FT HRSEERMLVLRNDQQDRTFIQQESYEALAQAGLEYIHLGVLQVRFQILHRRYAGTVAFL FT VFRDTRWNEDDRSIIAAMEVDLAEGNQLVYVIPDIMMTIKDFYRHIQISIKTKGYDTWE FT GGEANLLITRSITSRLSNTPNVGFAYKIERVAEYLRSKGVKAINATKHSAKQFQGGEWT FT LKPSRVVVPMQPSSMNTSTKYDGSISIRFGDYEASTSSRPPKYNTADDEIDSDEEHTIA FT MITEEIDEWLILAEELGYDLTEEVEDVPPEQSSRSMVGEEKIISQFLEKLELEEETTSM FT ASLNIAMMSEYPELKKISELVNASSEVTSSYRPPEIDMTGPAGYAPATSQQGWASSHPP FT TSGRNFRYKDPSGYFALPSAQQQNGSILLLSPTYDTKIFERWESTTLNHMADKSFATAE FT DKLIYLENLLGEMEKKTFQTWRMAFPTEFELMKTQALGANGTQNSISQIRRIFYLEDPK FT TGSTTSQDAAYKAIKSLVCTDMSGIAIKRYMNSYMDLAATSGRMWVSAELSDEFFTKLP FT NGLGDRVAKAFKEKHPGNTVGVPARVTFTQNYLEEVCREAAYQRSLKNLDFCKEFPVPG FT YYKKPGYKYGRRKTTTYKGKPHKTHVRIDKRKHLKNRKCKCYACGEEGHYASECRNKKQ FT YTDRVNIIENIALKEDEEIVSVGEDEDEVSDIWSLSEGEDGHGEEEVAAMVFALEDEEE FT DTLIGKPGTWRSQVRVTRKEYECIHLWDFNSEGYEKCKACRLEARANERMKCKECKMVI FT CCLCSNYCFDITIPRERSFSSQHHEPKWKEIATALGEINAKLEQEKKALIEELNRALEQ FT IKDYKQKGLPTAIIQEVDESKTEELERENELLNAVLEKKDKEIKDLKERLQWLSQEKVQ FT MLTEEDEKVFSASGRSGPRYNGLYNVKVGIEVEKEIKYLNAIVDTGATTCVVREARLTE FT KMLEESPVNVTLRGMNSISRASKVVKQGKIWIGEQYFRTPRTFALDISLSGGIDMILGC FT NFIRSLEGGVRIEGNDITFYKLVTSVRTQREAHQVAAIEELDLNEDEYYDIAISDQEKA FT YINKEIVDSSIFRRLKELGYIGEEPLKHWRKNQVKCSLEIKNPDMIIEDRPLKHVTPKM FT KEQMKKHVDKLLELKVIRPSTSKHRTTAMIVESGTEIDPKTGQEKRGKERLVFNYKRLN FT DNTEKDQYSLPGINTIIQRIGRSKIYSKFDLKSGFHQVAMEEASIPWTAFWAIDGLYEW FT LVMPFGLKNAPAVFQRKMDNCFRGTEEFIAVYIDDILIFSESPQQHVQHLKKFMEICEK FT NGLVLSPTKMKIGVSQVDFLGATIGQSKIRLQPHIIKKIADFEDEKLKETKGLRSWLGI FT LNYARNYIPNLGKTLGPLYSKVSPTGEKRMNHQDWVLINKVKRQVKELEDMELPPVEAC FT IVLETDGCMEGWGGVCKWKLPGQNKASEKICAYASGKFSPIKSTIDAEIQAVINSLDKF FT KIYYLDKKKIIIRTDCQAIVAFYSKIAQNKPSRVRWLTFSDFISGLGVQVSFEHIDGKD FT NTIANTLSRLVHILIKEEDQELINKIMVLWEKKTEDVMHINDNPLLVCGCGIPAVQRES FT RTSRNPNRKFVTCRDNRCRCWWWSDNIDDYTRRMIDLAQEEADYDEAMRRYHEELQEKK FT LDLMQINEALEAAEDQDRREGVISDADFEPNVIRDD" XX SQ Sequence 7317 BP; 2471 A; 1459 C; 1801 G; 1586 T; 0 other; tggtatcaga gccaggttaa ggtaatcatg tctttcatgg ggtaaaaccc atagataggg 60 gcctgagggc tctgcttatt ctttgttatg gaaagtacct gtgcaagtag taaggttaga 120 taagtcgaat ggtgtaataa cgcttagcag ggtgctgcac gctgatgttc tagggttgtt 180 ctaaggatcg tttacaggtt aggaagatac ctagttcaga tgaaaataga cctcaaaggc 240 ttggtcggtg cacgagaatg ccgagaagtg aacgctaaga gtgcgtgaca acataagctt 300 aagaggaaac cgtactcatc tatgtctatg gtaactaact aaagatccgg aagccgtcct 360 agtagcatca atctttgtgt ggtaccctga taggcaataa agaccagtaa gacgtaataa 420 cctatgacta cctctggaac tgggtataat ctgtgacagg aatagagcat cccgaagggt 480 tcccctatct gttttaaaca taagacatca caccttaagt aaaagctcat cttttatgac 540 ccaaagtttt tgggaaaaag aattagaagg ttgggtaaac tcaaacggtt tacgccaagc 600 aagactagaa tttctagatc tcgctaatca ggaaaaggtc tcccacaagg accttgcctg 660 gaacattcaa gtctttggtt tcaggtcaga tctcgctgga aaggtgaatt tggcagcgac 720 acacgttgcc aaggggcaaa tcatcaagga gttgcgtgaa gacaacatca agctccagaa 780 tagcgtacgc gcttgcaaaa gtgcgatcaa cgctcagaag gccgaaatcc agaagctcaa 840 ggagtctcag gacatcatcc aacaggaagt cctagggctc aaggaggcct tgatccagag 900 aagaccgctg tccaagaagg acgttgagga attggtcctg cgaatctctg aacagcctaa 960 gttcattgag cagcagaccg aagccttaac ggtcgagtta tcagaaaagg tggaccgtgt 1020 ggagaagttg atccacaagc tagagaagac cctcatcggg gaatgagcat agcaaacacc 1080 agagcaagtg ttgcatacca agaggcactt gcagctacca agaccctttg ggaggacaat 1140 tctaccggtc tcatcgagaa gagtgacggt gccaacaaca ccaactctgc aagacaagga 1200 aacacaatcg tgttcctttt ggtgcgcatc gacgctaagt tagctgaact tagtgagaag 1260 gtcactcagc ttgaagtcag aatcaagaac attgagaagg ccaagcagcc cactcaagac 1320 ttcaagacca atctagaaga gatcacaaag aagatctcag atctcaagat ctctgacaag 1380 ccgaaggaaa agggaggaaa cctcaaagtc ctccgcaatc cctacgacat cttgaaatct 1440 atcaagaact aaagatgtca acaagaggaa gagtcactgg tacaagctca cagacagtga 1500 ctgagccagg gcaacccctg gtagaagatc aaataaggga ttaccgccgt gctcaacgag 1560 caaggcatga agcagcaaga gttgccagaa acatcggcaa cattggaaga acgatcgtcg 1620 gaaggcagcc tcgagagcat actttggctc tcctgatgaa ccctgaagtg gagctgcaac 1680 gatccatgca agagcgagca agaacagtac ctgcagaggt actttacatg acaaggcgtg 1740 atgacatcca tcacagggtg tatcaccata gatctgaaga gaggatgctg gtgcttcgta 1800 atgaccagca agataggacg ttcattcaac aggagtccta tgaagcgctc gcacaagcag 1860 ggcttgaata catccatctt ggagtattgc aagtcagatt ccagatcctg cacaggagat 1920 atgcaggaac agtggctttc ctggtgttca gagacaccag atggaatgaa gatgaccgta 1980 gcatcatagc agctatggag gtggatctag ctgagggcaa tcagctagta tatgttatcc 2040 ctgatataat gatgacgatc aaggacttct atcgtcatat acagatctct atcaagacca 2100 agggatatga tacatgggaa ggaggagaag caaatctcct catcactagg agcattacat 2160 ctaggctatc caacacacca aatgtgggat ttgcctacaa gattgagaga gtggctgaat 2220 acctcagatc caagggggtt aaggccataa atgcgacaaa gcactccgcg aagcagtttc 2280 aaggcggaga atggacattg aagccgtcac gggttgtggt accaatgcaa ccctcgagca 2340 tgaacacttc cacaaagtat gacggaagta tctccataag atttggagat tatgaagctt 2400 caacatcatc aagaccacca aagtacaaca cagctgatga tgaaattgat tcagacgagg 2460 aacacactat agccatgata actgaagaaa ttgatgagtg gctaatcctc gcagaagagt 2520 taggctatga cctaacggaa gaagttgaag atgttcctcc ggaacaatct tccagaagca 2580 tggtggggga ggagaaaatc atctcccaat ttcttgaaaa actcgagctt gaagaagaaa 2640 caactagcat ggcaagttta aacatcgcca tgatgtctga atatccggag ttgaagaaaa 2700 tctctgaact ggtgaatgca tcatctgaag taacaagcag ttacaggcca ccagagattg 2760 atatgacagg accggccgga tatgcaccgg ctacatctca gcaaggttgg gcgagttcac 2820 acccaccaac atccggaaga aacttcagat acaaagatcc ttcgggatac tttgctttgc 2880 cgtcagctca acagcaaaat ggttcaatcc tgctgctctc cccaacttat gacactaaga 2940 tatttgaaag gtgggagtca acaacactga accacatggc agacaagagt tttgccacgg 3000 cagaggataa actgatatat ctggagaatt tacttgggga aatggagaaa aagacattcc 3060 aaacttggag aatggctttc cccacagaat tcgaattaat gaagactcaa gctctgggtg 3120 caaatggcac tcaaaattcc atttcacaaa tcagaagaat cttctactta gaagacccga 3180 agacaggctc aacaacatct caagatgcag cttacaaagc catcaagagc ctggtgtgca 3240 ctgacatgag tggaatagca atcaagaggt acatgaatag ctacatggac ttggcagcca 3300 catcaggaag gatgtgggta tcagcagaac tctctgatga gttctttact aagttaccca 3360 atggcctagg tgacagagtg gccaaggcat tcaaagaaaa gcaccctggt aacacagtgg 3420 gtgtcccagc aagggtaaca tttacccaaa attatttgga agaagtgtgc agagaggcag 3480 catatcaaag gtctctcaag aatctagact tctgcaaaga attcccagtg ccaggatact 3540 acaagaagcc tggatacaaa tatggcagaa gaaagacgac gacgtacaag ggcaagcctc 3600 acaaaactca tgtgaggata gataaaagaa aacatttgaa gaacagaaag tgcaagtgct 3660 atgcctgcgg tgaagaaggg cattacgcaa gtgaatgccg aaacaagaag caatacactg 3720 acagagttaa catcattgaa aatatagcac tcaaagaaga tgaagaaatt gtgtcagttg 3780 gtgaagatga ggacgaagtc tctgacatct ggtccttatc agaaggtgaa gatggccatg 3840 gtgaggaaga agtggccgca atggtttttg ccttggaaga tgaagaggaa gacaccttga 3900 taggcaaacc tggaacatgg agatctcaag taagggtgac aagaaaagaa tatgaatgta 3960 ttcacctttg ggatttcaac tctgaagggt atgaaaagtg caaagcctgc agacttgaag 4020 caagggccaa tgaaaggatg aagtgcaaag aatgcaaaat ggtgatttgc tgcttatgca 4080 gtaattactg ttttgatatc acaatcccaa gagagaggag tttctcttct cagcaccacg 4140 agcccaagtg gaaagagatt gcaactgccc taggagagat caatgcaaaa cttgaacaag 4200 aaaagaaggc gttgatagaa gagttgaaca gagccttgga acaaatcaag gactacaagc 4260 agaagggact tccaacagcc ataatacagg aagtcgatga gagtaaaact gaagaacttg 4320 agagggagaa tgagctgctg aacgcagttc tagagaaaaa ggataaggag ataaaagatc 4380 tcaaagaaag attgcagtgg ttatctcagg agaaggtgca gatgcttaca gaagaagatg 4440 agaaggtatt ctctgcatca ggaagatctg gcccaagata caatgggctg tataatgtca 4500 aagtgggaat cgaggtagaa aaggaaatca aatacctcaa cgccatagta gacacaggag 4560 ctactacctg tgttgtgaga gaagcaagat tgacggagaa gatgttggaa gaatctccag 4620 tcaacgttac attaagaggc atgaattcaa tatcaagagc ctcaaaggtg gttaaacaag 4680 gaaaaatctg gataggggaa caatatttca gaacccctag gacatttgcc ttggacatat 4740 cattatcagg aggcatagat atgatacttg gatgcaactt catcagatca ctggaaggtg 4800 gagttagaat tgaaggaaat gacataacct tctacaaatt ggtaacaagt gtcagaaccc 4860 agagagaagc ccatcaggtc gcagctattg aggagctgga tttaaatgag gatgaatatt 4920 atgacatagc catttctgat caagagaagg cttatatcaa caaagagatt gtagattcct 4980 caatattcag aagattgaag gaactgggct atattggcga agaaccactg aagcattggc 5040 gaaagaatca agtgaaatgc agtctggaaa tcaaaaaccc agacatgatt atagaagaca 5100 gaccattaaa gcatgtcacg ccaaagatga aggagcagat gaagaagcat gtagacaagc 5160 tcctagagtt gaaggtgatc aggccgtcca ctagtaaaca cagaacaaca gcaatgatag 5220 tggaatcagg cacagagata gatcccaaga ctggccaaga gaagagagga aaggaaagat 5280 tggtgttcaa ttacaagaga ttaaatgata atacagaaaa agaccagtac tctctgccag 5340 ggatcaacac aattatccag aggattggaa ggtcaaaaat ctattcaaaa tttgacctaa 5400 agagtggatt tcatcaagtt gccatggagg aagcgtccat tccttggact gcattttggg 5460 caatagatgg attatatgag tggcttgtaa tgccattcgg actgaagaac gccccagcgg 5520 tgttccagag aaaaatggat aattgcttca gaggaactga agaattcata gcagtataca 5580 ttgatgacat tctgatattc tctgaaagtc cacagcaaca tgtccaacac ctgaagaaat 5640 tcatggagat ttgtgagaag aatgggcttg ttcttagccc tacaaaaatg aaaattggtg 5700 tttcacaggt ggatttctta ggagccacca ttggacagtc caaaatcaga ctacagcctc 5760 atattatcaa gaaaatagct gattttgaag atgaaaagct gaaggagacg aagggactca 5820 ggtcatggct agggatattg aattatgcaa gaaattacat ccctaacctt ggaaaaacat 5880 tgggacctct ctactcaaag gtgtcaccca ccggagagaa aagaatgaat caccaagatt 5940 gggtcctaat caacaaggtg aaaaggcaag tgaaggaact ggaggacatg gaattgcccc 6000 cagtagaagc atgcatagtc ctggagactg acggatgtat ggaaggatgg ggaggtgtat 6060 gcaaatggaa actccctgga cagaacaaag catctgagaa gatttgtgct tacgcaagtg 6120 gaaaattctc acccatcaag agcacaatag atgcagagat ccaagcggtg atcaatagct 6180 tggataaatt caagatctac tacttggaca agaagaagat cataatcaga acagattgcc 6240 aggccattgt ggcattctac tcaaaaattg cacaaaacaa accatcaagg gtgagatggt 6300 taacattttc tgattttatc tcagggttag gagtgcaggt gtccttcgag cacatagatg 6360 gcaaggacaa tacaatcgcc aatacattat cgcggttggt tcacatcttg atcaaagaag 6420 aagaccagga actgatcaac aagatcatgg ttctatggga gaagaagact gaagatgtga 6480 tgcacatcaa cgacaaccca ctcctcgtat gcggttgcgg aatcccagca gtgcaaagag 6540 agtcaagaac ttccagaaac ccaaacagga agtttgttac ttgcagggat aaccgatgcc 6600 gttgctggtg gtggtcagat aacatcgacg attacaccag aagaatgatt gatcttgcac 6660 aagaagaagc tgactatgac gaagccatga gaaggtatca tgaagagctg caagaaaaga 6720 agttggacct catgcagatc aacgaagcac ttgaggccgc agaagatcaa gatagaagag 6780 aaggcgtcat cagtgacgca gatttcgagc caaacgtcat ccgtgacgat tgaggcggaa 6840 gtggtggacc cataccaaca gatggcacta actgttgtga cagggtgtac gagatgcctc 6900 acccaccggt aggtgtgtga taagatatgt cggatctgag atccgcttta tgtaaagaga 6960 ggagcctgcg tgccctctac gcgtgtgtct gctttccaag gtgcgatgct gcgtcacgca 7020 caaggaaacg ctttagtcca gagcatgtga tgcgccacta cgcattattg gcgacgatgg 7080 ggccccaagc gcacccggcc agatgccata gtgagccttc aggctctata taaggacttg 7140 taagacctca ttgctaggca tcggagaaac actccattgc ttactttgag ccataagaga 7200 aataaactca agtattctct tccactccga gccttagatt acctatgttc tgaaaatctt 7260 ttgagaagta agaacaagat ccgtttcgtt ttccgcagtt cgcgcccctc tttctcc 7317 //