ID FJ438907; SV 1; linear; genomic RNA; STD; VRL; 7205 BP. XX AC FJ438907; XX DT 13-JAN-2009 (Rel. 99, Created) DT 13-JAN-2009 (Rel. 99, Last updated, Version 1) XX DE Human cosavirus B1 polyprotein gene, complete cds. XX KW . XX OS cosavirus B1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Cosavirus. XX RN [1] RP 1-7205 RX DOI; 10.1073/pnas.0807979105. RX PUBMED; 19033469. RA Kapoor A., Victoria J., Simmonds P., Slikas E., Chieochansin T., Naeem A., RA Shaukat S., Sharif S., Alam M.M., Angez M., Wang C., Shafer R.W., Zaidi S., RA Delwart E.; RT "A highly prevalent and genetically diversified Picornaviridae genus in RT South Asian children"; RL Proc. Natl. Acad. Sci. U.S.A. 105(51):20482-20487(2008). XX RN [2] RP 1-7205 RA Kapoor A., Victoria J., Simmonds P., Slikas E., Chieochansin T., Naeem A., RA Shaukat S., Sharif S., Alam M.M., Angez M., Wang C., Shafer R.W., Zaidi S., RA Delwart E.; RT ; RL Submitted (05-NOV-2008) to the INSDC. RL Molecular Virology, Blood Systems Research Institute, 270, Masonic Avenue, RL San Francisco, CA 94118, USA XX DR MD5; 9792170d4427774e702d950d0831cac3. DR EuropePMC; PMC3503094; 23015712. DR EuropePMC; PMC5059993; 27729038. DR EuropePMC; PMC6098101; 30120342. DR RFAM; RF00210; IRES_Aptho. XX FH Key Location/Qualifiers FH FT source 1..7205 FT /organism="cosavirus B1" FT /host="Homo sapiens" FT /strain="HCoSV-B1" FT /isolate="2263" FT /mol_type="genomic RNA" FT /country="Pakistan" FT /isolation_source="feces" FT /db_xref="taxon:2849707" FT 5'UTR <1..749 FT /note="contain type II IRES elements" FT CDS 750..7124 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:B8XTQ3" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR037080" FT /db_xref="UniProtKB/TrEMBL:B8XTQ3" FT /protein_id="ACL15190.1" FT /translation="MGANNSKESVNSSGNNGTTVNNFYANNYYGSIDASAQGVGTSSTP FT ENGTVSGFLGMASSAFNALSLLASPKVENSLYTEDRLLTRKAGNTSVNSQAAEGVLQGY FT GHESDFSNPTSCGDAPSKAVPATSRGYTVHLKDWTSTIYAYYAQLYRISDRIKDPAIGN FT LFSRNMDAHSFTKTGYEVMLQVNTSPFHSGLIGLFLVPELVRSTGSDLEWMVMTQKLSL FT YQPPAEEIAHSHYSTQTITPNKNVSFDLADMTAEQMMLFPHQLINPKDTNVATVRVPYV FT NVAPTSDPRVHNIWTAVIMVVTPLKYADGASPTVQMTLTITPIDTVFNGLHHASSTAQS FT PIPTRPFHHSFQFSSTVPDVTEPCYGMTVNPPKDYMPEPVGDLVSLAKVGSLVTVSYPS FT NSDQPYFEISNTKKDTPLFKCNVLLSDPHFQHTLVSNLGKYFANYRGSLQFSFISATTG FT MTKGKLLLSYTPPGSGAPTTLEQAMNGTYSIWDIGLQSTFNFVVPYISAVDFRLCAASA FT SSVVNTDGWFTVWLLNSLTYPPGTPPTQNVVVMLSAGEDFSYRNPISPAWTQSPGSTPH FT DNAEKGTIENCDASLNSGHSVSLPTPHSNVRFFFDRYRFLGLLESTPNTAPEITSPYDP FT TSFKVRDLAYMFNVNNTKRPFNALALTPTPSIDGSPITTYLVSSNMAQSDYNYIFTPGD FT PHLYRSCPFTYFHADLEVTVKPPPELTGRWRVTWYPPGATIDTVTVHLATEASTESSTT FT TVTSSLSSSGSLFTLNPTFYGKNGFPVSFMIPFCSPLTLLPLYFDGYPDYKRSSGAYGI FT GPASTFGTLTVDYDGTKQFFSVFIRYKNFRGYIPRPVIRFPTTNPDANVKYITLEGGPP FT RPLSTSIRSRAAYLRQKLMHDIETNPGPVQSKYEAQGPIDLLQLLRNPQTVDNVTRLLN FT TLNNLMQTWNNIKTTLSDAIFLRDMVCLLVKLTSLAYLVKDQGPGAYFAAAAILVSDGI FT SFLDWYEKIRIFMSRRLRTPPPPMFKVQGPDLRDVVTFFNAAKGAQWMVESIKSLINWI FT KQWLELEEENEAVKLEKMLIESPSHCKNIHMYNKGELFAKPQESFDFLDRLCETATSLG FT KTHLASYFRNFVTYDSDTSRPEPVVVVLRGKPGAGKSAAATVLAAAVSKLCVGSQSVYT FT LSPDTEHMDGYHGQFATIMDDLGQNPDGEDFRSFCQMVSCAQYRPPMAGLPDKGILFTS FT RIVIATTNLCDFNPLTIADPRALERRITFDILVSPGPACNKNGKLDLNAALTPDGPGEG FT PFTTDCQILHTTGLTLKDIRKGTTLNLKDLTELVVDRINKKKKVGNMLENLVAQSPNKI FT VGYTKDDDGVVIVDSLEDWNKIKDKKRKQEILEVVAQEMQKRHEEHNEFKSLMTKFVTA FT LGVIAAVGAAFYTYKLIKGGEEETSEKEEEKKDSKDVEGPYNGPDKKSLKVLKLKAQSP FT MLDLEKKVFKNVLPFGLVYNGKTYQQSCLAIGKRVILVNAHAFNSIEDRFEVDGKTYHL FT DDVDVCVLDTSEGLSDVCAVKLPPGPDFPSVVRLFMPFHADLHPGLRLTILSNDQLPMM FT REGSFLRNEDYAPTNIGNIPFVCLYRSTSYFGMCGSPVMTRGPDSQGILGIHCAGGGGV FT SVLSRVTRRMAESVIDYFYPLQTQGLIVSTEEGTRVHVPRVSKLKRTHASYPATSKYGP FT AALTRNDPRLNPGVDLDEMIFSKHKDNVLVRKGTSVHESLRKSAQVYACKFSGIDFSPL FT TVEEAILGIPGLEKLDPKTASGLPYTKTRKQMIDFKNGKILDPELEERLKIWLSGKAPE FT CFYQTFLKDEIRPIEKVKAGKTRIIDVPPLDHVLAFRMLFGRFMAYYHLNPGFKIGSAI FT GCDPETAWNGFGYTLSSKQYKYDFDYSNFDASHSTSIFEILEEEFFTPENGFDVRCSLL FT LKSLSCSTHCCENKRLTIISGLPSGTSGTSVLNTVINNIIFHASLYNVYSNFEWQDVEM FT IAYGDDVVAASDHELRLDLVKDFMKTIGYKITPADKGEEFTPKDMADLTFLKRRFVKIS FT GLWAPVMETENLQAMLSWYKPGTLNEKLTSIAHLAHFSGKQTYEELFEPFVKNGFEILP FT WKQLHLEWLNKFGY" FT mat_peptide 750..953 FT /product="VP4" FT mat_peptide 954..1766 FT /product="VP2" FT mat_peptide 1767..2456 FT /product="VP3" FT mat_peptide 2457..3350 FT /product="VP1" FT mat_peptide 3351..3443 FT /product="2A" FT mat_peptide 3444..3800 FT /product="2B" FT mat_peptide 3801..4763 FT /product="3C" FT mat_peptide 4764..5069 FT /product="3A" FT mat_peptide 5070..5126 FT /product="3B" FT /note="VPg" FT mat_peptide 5127..5735 FT /product="3C" FT /note="Pro" FT mat_peptide 5736..7121 FT /product="3D" FT /note="RdRp" FT 3'UTR 7125..>7205 XX SQ Sequence 7205 BP; 2024 A; 1653 C; 1501 G; 2026 T; 1 other; ttgccagttt tttgaaacgt gtggtttgac gtctaaccat tatggcagtg ggtggagtac 60 tgcaaagatg tcaccgtgct ttacacggtt tttgaacccc acaccggctg tttggcgctt 120 gcaggacagc aggtttattt tcttttaact ctctctttct agccacacac gatctatgtg 180 tgtgggcgga gtgatactcc cgttccttct tggacaggcg gcctccacgc cctttgtgga 240 tcttaaggct accaagtcac tggtgttgga aagtgaagag aaaggagttc cttgggaact 300 acatgtggca ttgacagagg ttgtagcgat gctgtgtgtg tgtgcggatt acccccgtgg 360 cgacacggac cccacaggcc aaaagccctg tccgaaagga cccacacagt ggagcaaccc 420 cagctcccct cttcaatgtt ttgtgttagc aaccttggta ttattttctc tcaagcttcc 480 aatacaccgg gccccaaaga tgtcctgaag gtaccccgtg tatctgagga tgagcaccat 540 caactacccg gacttgttct ttcgagaaca gacgcatgtg gtaacccagc cccgatccta 600 aggggtcggg gcttttgctc actcagcaca ggatctgatc aggagacctc ccccccctgc 660 tttacagggg gcgggggttt aaaaattgcc caaggcctgg caaataacct aggggactag 720 gttttccttt ttattttaaa gttgtcaata tgggtgcaaa taacagcaaa gaatctgtga 780 acagctctgg caataatggc acaactgtta ataactttta tgctaataat tattatggct 840 ctattgatgc ttctgcccag ggagttggga cctcttctac tcccgaaaac ggtactgtat 900 ctggttttct tggaatggca agttctgctt ttaatgcact ttccttattg gcttccccaa 960 aggtagaaaa ctctttatac actgaagaca gacttttgac acggaaagct ggcaacacat 1020 ctgtaaattc gcaggctgca gaaggtgtgt tgcaaggata tggacacgaa agtgacttct 1080 ccaatcctac ttcgtgcggt gatgctccca gcaaagccgt gccggccacc tctagaggtt 1140 acacagtaca cttgaaagac tggacttcta caatttatgc ttactatgcc cagttgtata 1200 gaatttctga cagaataaaa gacccagcta taggcaatct gttttctaga aatatggatg 1260 ctcactcctt taccaaaaca ggatatgaag taatgttgca ggttaatacc tccccctttc 1320 actctggctt gattggtctt ttcttggttc cagaattagt tcgttcaacc ggatcggatt 1380 tagaatggat ggtcatgaca cagaagctca gtttgtatca acctccggct gaggaaattg 1440 cccactcaca ctattctact cagacaataa caccaaacaa aaatgtatct tttgatctag 1500 ccgacatgac tgcagagcaa atgatgttgt ttcctcatca actcatcaac cccaaagata 1560 caaatgttgc aactgttaga gtcccttatg ttaatgtggc cccaacaagt gatcccagag 1620 ttcataatat ctggactgca gtaattatgg tagtaacccc cctcaaatat gctgacgggg 1680 catcccctac agtgcaaatg actcttacca taacccccat tgatacagtc ttcaatggtt 1740 tgcaccacgc ttcttctacg gctcaaagcc ctatcccaac cagacctttc caccactctt 1800 tccagttcag ctcaactgtt ccagatgtca ctgagccttg ttatggaatg actgttaatc 1860 ctcccaaaga ttacatgcct gaaccagtgg gtgatttggt ttccttagcg aaagtaggaa 1920 gtctagttac tgtgtcttac cctagcaact cagatcaacc ttactttgag atttcaaaca 1980 ccaaaaagga cactcctctt ttcaagtgca atgttctact ttctgaccct cactttcagc 2040 acactttggt gtctaattta ggtaagtact ttgcaaacta tagaggatct ttacagtttt 2100 cttttatttc agctactact ggcatgacta agggcaagtt gcttctttcc tacaccccac 2160 caggaagtgg tgcaccaacc actttggagc aagcaatgaa tggcacgtac tcaatttggg 2220 acattggttt acaatccacc ttcaactttg ttgtgcccta catatcagct gtggacttta 2280 gattgtgtgc tgcctctgct agctccgtgg taaacacgga tggatggttt acagtgtggt 2340 tgttgaactc tcttacttac cctccaggaa cccctccaac ccagaatgta gtggtcatgt 2400 tatcagcagg tgaagacttt tcctacagaa accccataag tccagcttgg acccaaagcc 2460 caggttctac cccgcatgac aatgcggaga aaggtaccat tgagaattgt gatgcatcct 2520 tgaacagtgg acatagtgtt tctctgccaa ctcctcactc taatgttaga tttttctttg 2580 atagatacag atttttgggg ttgttagaaa gtacccccaa cacggctcca gaaatcacaa 2640 gtccttatga ccccacctct tttaaagtta gggatctagc ttatatgttt aatgtcaaca 2700 ataccaagag accatttaat gcattggctt tgacaccaac gccatccatt gatggctctc 2760 ccatcacaac atacttggtt tcttctaata tggcacaaag tgactacaat tacattttca 2820 ctccaggaga cccacacttg tacagatctt gccccttcac ttattttcat gcagatcttg 2880 aagtgacagt aaagccccct ccagaactaa caggccgctg gcgcgtcact tggtaccctc 2940 cgggcgccac gattgacact gtcacggttc acttagccac ggaagcttct actgagtcta 3000 gtacaaccac tgttacatct agtctttcat cttcaggtag tttgtttaca cttaatccta 3060 cattttatgg caaaaatggc tttccagtct ctttcatgat acctttctgt agtcctctca 3120 ccctcctccc tctgtatttt gatggttacc cggactacaa gcgtagctcc ggagcctacg 3180 ggataggccc tgcatccact tttggtactc ttaccgttga ctatgacggg accaaacaat 3240 ttttcagtgt cttcattaga tataaaaatt tcagaggcta tattcccaga cctgttataa 3300 ggtttcctac aacaaatcct gatgctaatg tgaaatacat aacactggag ggtggtccac 3360 ctcgccctct aagtactagc ataagatctc gtgccgccta tttgaggcag aaactgatgc 3420 atgacattga gacaaatcca ggtccagttc agagcaaata tgaagcacaa ggaccaatag 3480 acttgttaca actactcagg aaccctcaga cagtcgacaa tgtcaccaga ctacttaaca 3540 ccttaaacaa tctaatgcaa acatggaaca acataaagac tactctttca gatgccatat 3600 tcctcaggga catggtgtgc ttgcttgtta aactcacctc actagcatat ctagtcaaag 3660 atcaaggacc aggtgcttac ttcgctgctg ctgctatact tgtttcagat ggtatttcct 3720 ttctggattg gtatgaaaag atcagaattt tcatgtcacg tcgacttaga actcctcctc 3780 ctcctatgtt taaggttcaa ggacctgatc ttagagatgt agttacattc tttaatgctg 3840 ctaaaggtgc acagtggatg gttgaatcca tcaagtcctt aataaattgg ataaaacaat 3900 ggcttgaatt ggaagaagaa aatgaagctg tcaagttaga gaaaatgttg attgaaagtc 3960 cctcccattg caaaaacata cacatgtaca acaaaggaga gctctttgca aaacctcagg 4020 aatcatttga ttttttagac aggctatgtg agactgcaac ttcccttggt aaaacacacc 4080 tagcttcata tttcagaaac tttgtgacct atgactcaga cacttctcga cctgaaccag 4140 tagttgttgt actgcgtgga aaacccggcg caggaaagtc agctgctgcg acagttttgg 4200 ccgctgctgt atcaaaattg tgtgttggct ctcagtctgt ttatactctt tcccctgaca 4260 cagaacacat ggatggatat cacggacagt ttgctacaat tatggatgac cttggacaaa 4320 accctgacgg cgaggacttt cgcagttttt gccaaatggt gtcatgtgcc caatatagac 4380 cacccatggc tggtttacca gacaaaggca tactctttac ctccagaata gttatagcca 4440 ctaccaactt gtgtgatttc aacccattga ctattgctga ccctcgtgcc ctggaacgca 4500 gaatcacttt tgacatcctg gtcagcccag gaccggcatg taataagaat ggcaaattgg 4560 acttgaatgc tgccctaaca ccagatggtc caggagaagg gcctttcaca actgactgcc 4620 aaatactgca tactactggc ctgactttga aggacatacg caaaggtact accctaaact 4680 tgaaagacct aacagagttg gttgttgaca gaattaacaa gaaaaagaag gtaggcaata 4740 tgctagaaaa tttggttgcc cagagtccca acaaaattgt aggctacacc aaggatgatg 4800 acggtgtcgt cattgtggat agcctagagg attggaacaa gatcaaggac aagaagagaa 4860 aacaggaaat tctggaagtt gtggcacagg aaatgcaaaa gaggcatgaa gaacataatg 4920 aattcaaatc tctgatgaca aaatttgtta cagcactggg tgtgatcgca gcggtaggcg 4980 ctgcattcta cacctacaaa ttaattaaag gtggtgaaga agagacttca gaaaaagagg 5040 aagagaagaa agatagcaaa gatgttgagg gaccatacaa tggacctgac aagaaatcac 5100 tcaaggtttt gaaattaaag gctcagagtc ctatgttaga tctggaaaag aaagttttca 5160 aaaatgtgtt gccttttgga cttgtatata atggaaaaac ctatcaacaa tcttgcttgg 5220 ctattggaaa aagggttata ctagtcaatg ctcatgcctt taattcaatt gaggacagat 5280 ttgaagtgga cgggaagacc taccacttgg atgatgtgga tgtgtgtgtg ttagatacct 5340 ctgaagggtt gtcagacgtg tgcgcagtta aattgccacc cggcccagat ttcccaagtg 5400 tagtcagact tttcatgccc ttccatgctg atcttcaccc cggcttacgg cttaccattc 5460 tttccaatga ccagttgccc atgatgcgtg aaggctcttt ccttagaaat gaggattatg 5520 ctcccaccaa catcggcaat ataccctttg tttgtctcta tcgcagtact tcttattttg 5580 gtatgtgtgg ctccccagtc atgactagag gcccagattc tcaggggatt ttgggcatac 5640 actgtgctgg tggtggnggt gtcagtgttc tgtctcgagt gactagacgg atggctgaat 5700 cagtgattga ctatttctac cccctgcaaa cacaaggctt gattgtctct actgaggaag 5760 gaaccagagt gcacgtaccg cgtgtcagca agctgaaaag aactcatgcc tcataccctg 5820 caacctctaa atatggacct gctgctttga cccgcaatga ccctcggctc aaccctggtg 5880 tggatctcga tgaaatgatt ttctccaaac acaaagacaa tgtgctagtt agaaaaggaa 5940 ccagtgtaca tgaaagtctc agaaaatctg ctcaggttta tgcatgcaaa ttctcaggca 6000 ttgacttttc ccctttaacc gtggaggaag caatacttgg catccctggt ttggaaaaat 6060 tggaccccaa gactgcctct ggcttaccat acacaaaaac aagaaaacaa atgatcgact 6120 tcaaaaatgg caaaatcctg gacccagagc tcgaagagag attgaaaatt tggctttcag 6180 gaaaagctcc agagtgtttt taccagactt ttcttaagga tgaaatcaga cctatagaaa 6240 aagtcaaggc aggtaaaacc agaatcatag atgttccccc actggatcac gtgttggcct 6300 tcagaatgct ttttggaaga tttatggctt attaccacct caacccagga ttcaaaattg 6360 gctcagcaat tggttgtgac ccagaaactg cttggaatgg atttggttac acgctctcta 6420 gcaaacaata caaatatgac tttgactatt caaactttga tgcaagtcat tccacttcca 6480 tatttgaaat cttggaagag gaattcttta ccccagaaaa tggttttgat gtgagatgct 6540 ctctactgct aaaatcttta tcctgttcta ctcactgttg tgaaaacaaa cggcttacca 6600 taataagtgg tttgccttca ggaacttctg gcacttcagt cttgaataca gtaatcaaca 6660 acattatttt ccatgcctct ctctacaatg tttactcaaa cttcgagtgg caagatgtag 6720 aaatgattgc ttatggtgat gacgtagtgg ctgcttcaga ccatgaatta agacttgacc 6780 tggtgaagga ctttatgaaa acaattggat acaagattac tcctgcagac aaaggagagg 6840 aattcactcc caaagatatg gccgacctca cgtttctgaa gcgtaggttc gtcaagatca 6900 gtggactgtg ggctccggtc atggagaccg agaaccttca ggcaatgctt tcctggtaca 6960 aacctggcac tttgaatgaa aaattgacca gcattgccca cctggcacac ttctctggta 7020 aacaaaccta tgaggagtta ttcgaaccgt ttgtcaagaa cggtttcgaa atactgccat 7080 ggaaacagct tcacttggag tggctcaata aatttggcta ttaattgttg aactggttaa 7140 tattctttat caattggttt aatttggttt aatttggcat ttattgggtg tattcaaatt 7200 ttata 7205 //